data_2HG5 # _model_server_result.job_id su7eGa43k_e8MHTMKRU4ww _model_server_result.datetime_utc '2024-12-26 20:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":205}' # _entry.id 2HG5 # _exptl.entry_id 2HG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.406 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(BUTYRYLOXY)-3-HYDROXYPROPYL NONANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HG5 _cell.length_a 156.597 _cell.length_b 156.597 _cell.length_c 75.706 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 313.194 313.194 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 313.194 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 313.194 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 C C TYR 57 C TYR 78 1_555 C O2 GOA 58 C GOA 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 C C GOA 58 C GOA 79 1_555 C N ASP 59 C ASP 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 C O THR 54 C THR 75 1_555 D CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.145 ? metalc ? metalc2 C O THR 54 C THR 75 4_575 D CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc3 C O THR 54 C THR 75 2_775 D CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc4 C O THR 54 C THR 75 3_755 D CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc5 C O THR 54 C THR 75 1_555 F CS CS . C CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.314 ? metalc ? metalc6 C OG1 THR 54 C THR 75 1_555 F CS CS . C CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc7 C OG1 THR 54 C THR 75 4_575 F CS CS . C CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc8 C O THR 54 C THR 75 4_575 F CS CS . C CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.311 ? metalc ? metalc9 C OG1 THR 54 C THR 75 2_775 F CS CS . C CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc10 C OG1 THR 54 C THR 75 3_755 F CS CS . C CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc11 C O THR 54 C THR 75 2_775 F CS CS . C CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.307 ? metalc ? metalc12 C O THR 54 C THR 75 3_755 F CS CS . C CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.31 ? metalc ? metalc13 C O VAL 55 C VAL 76 1_555 D CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.685 ? metalc ? metalc14 C O VAL 55 C VAL 76 4_575 D CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.679 ? metalc ? metalc15 C O VAL 55 C VAL 76 3_755 D CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.683 ? metalc ? metalc16 C O VAL 55 C VAL 76 2_775 D CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.678 ? metalc ? metalc17 C O GLY 56 C GLY 77 1_555 E CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc18 C O GLY 56 C GLY 77 4_575 E CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc19 C O GLY 56 C GLY 77 3_755 E CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc20 C O GLY 56 C GLY 77 2_775 E CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc21 C O TYR 57 C TYR 78 1_555 E CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.894 ? metalc ? metalc22 C O TYR 57 C TYR 78 4_575 E CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.89 ? metalc ? metalc23 C O TYR 57 C TYR 78 3_755 E CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.892 ? metalc ? metalc24 C O TYR 57 C TYR 78 2_775 E CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.888 ? metalc ? metalc25 G CS CS . C CS 204 1_555 K O HOH . C HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.847 ? metalc ? metalc26 G CS CS . C CS 204 1_555 K O HOH . C HOH 303 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.84 ? metalc ? metalc27 G CS CS . C CS 204 1_555 K O HOH . C HOH 303 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.845 ? metalc ? metalc28 G CS CS . C CS 204 1_555 K O HOH . C HOH 303 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 3.843 ? # _chem_comp.formula 'C16 H30 O5' _chem_comp.formula_weight 302.406 _chem_comp.id B3H _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(BUTYRYLOXY)-3-HYDROXYPROPYL NONANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C11 B3H doub 70 n n C11 C12 B3H sing 71 n n C11 O41 B3H sing 72 n n C12 C13 B3H sing 73 n n C12 H121 B3H sing 74 n n C12 H122 B3H sing 75 n n C13 C14 B3H sing 76 n n C13 H131 B3H sing 77 n n C13 H132 B3H sing 78 n n C14 C15 B3H sing 79 n n C14 H141 B3H sing 80 n n C14 H142 B3H sing 81 n n C15 C16 B3H sing 82 n n C15 H151 B3H sing 83 n n C15 H152 B3H sing 84 n n C16 C17 B3H sing 85 n n C16 H161 B3H sing 86 n n C16 H162 B3H sing 87 n n C17 C18 B3H sing 88 n n C17 H171 B3H sing 89 n n C17 H172 B3H sing 90 n n C18 C19 B3H sing 91 n n C18 H181 B3H sing 92 n n C18 H182 B3H sing 93 n n C19 H191 B3H sing 94 n n C19 H192 B3H sing 95 n n C19 H193 B3H sing 96 n n O21 C21 B3H doub 97 n n C21 C22 B3H sing 98 n n C21 O42 B3H sing 99 n n C22 C23 B3H sing 100 n n C22 H221 B3H sing 101 n n C22 H222 B3H sing 102 n n C23 C24 B3H sing 103 n n C23 H231 B3H sing 104 n n C23 H232 B3H sing 105 n n C24 H241 B3H sing 106 n n C24 H242 B3H sing 107 n n C24 H243 B3H sing 108 n n C41 O41 B3H sing 109 n n C41 C42 B3H sing 110 n n C41 H411 B3H sing 111 n n C41 H412 B3H sing 112 n n C42 O42 B3H sing 113 n n C42 C43 B3H sing 114 n n C42 H42 B3H sing 115 n n C43 O43 B3H sing 116 n n C43 H431 B3H sing 117 n n C43 H432 B3H sing 118 n n O43 HO43 B3H sing 119 n n # _atom_sites.entry_id 2HG5 _atom_sites.fract_transf_matrix[1][1] 0.006386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CS C 1 201 101 CS CS . E 4 CS C 1 202 102 CS CS . F 4 CS C 1 203 103 CS CS . G 4 CS C 1 204 104 CS CS . H 5 B3H C 1 205 100 B3H B3H . I 6 HOH A 1 301 9 HOH HOH . I 6 HOH A 2 302 17 HOH HOH . I 6 HOH A 3 303 12 HOH HOH . I 6 HOH A 4 304 19 HOH HOH . I 6 HOH A 5 305 47 HOH HOH . I 6 HOH A 6 306 20 HOH HOH . I 6 HOH A 7 307 13 HOH HOH . J 6 HOH B 1 301 26 HOH HOH . J 6 HOH B 2 302 5 HOH HOH . J 6 HOH B 3 303 38 HOH HOH . J 6 HOH B 4 304 28 HOH HOH . J 6 HOH B 5 305 11 HOH HOH . J 6 HOH B 6 306 35 HOH HOH . J 6 HOH B 7 307 43 HOH HOH . J 6 HOH B 8 308 8 HOH HOH . J 6 HOH B 9 309 23 HOH HOH . J 6 HOH B 10 310 1 HOH HOH . J 6 HOH B 11 311 31 HOH HOH . J 6 HOH B 12 312 30 HOH HOH . J 6 HOH B 13 313 32 HOH HOH . J 6 HOH B 14 314 36 HOH HOH . J 6 HOH B 15 315 25 HOH HOH . J 6 HOH B 16 316 16 HOH HOH . J 6 HOH B 17 317 21 HOH HOH . J 6 HOH B 18 318 15 HOH HOH . K 6 HOH C 1 301 2 HOH HOH . K 6 HOH C 2 302 44 HOH HOH . K 6 HOH C 3 303 3 HOH HOH . K 6 HOH C 4 304 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 B3H . . . H 5 165.243 141.285 -28.884 1 69.6 ? O11 B3H 205 C 1 HETATM 2 C C11 B3H . . . H 5 166.149 140.556 -29.332 1 69.52 ? C11 B3H 205 C 1 HETATM 3 C C12 B3H . . . H 5 167.261 141.145 -30.21 1 69.01 ? C12 B3H 205 C 1 HETATM 4 C C13 B3H . . . H 5 166.744 141.632 -31.552 1 68.4 ? C13 B3H 205 C 1 HETATM 5 C C14 B3H . . . H 5 167.556 141.038 -32.712 1 67.9 ? C14 B3H 205 C 1 HETATM 6 C C15 B3H . . . H 5 167.222 141.229 -34.083 1 67.41 ? C15 B3H 205 C 1 HETATM 7 C C16 B3H . . . H 5 165.999 142.039 -34.565 1 67.16 ? C16 B3H 205 C 1 HETATM 8 C C17 B3H . . . H 5 164.76 141.158 -34.812 1 66.7 ? C17 B3H 205 C 1 HETATM 9 C C18 B3H . . . H 5 164.832 140.375 -36.123 1 66.36 ? C18 B3H 205 C 1 HETATM 10 O O21 B3H . . . H 5 169.361 135.725 -29.891 1 66.98 ? O21 B3H 205 C 1 HETATM 11 C C21 B3H . . . H 5 168.868 136.662 -30.558 1 67.05 ? C21 B3H 205 C 1 HETATM 12 C C22 B3H . . . H 5 168.898 136.619 -32.053 1 66.42 ? C22 B3H 205 C 1 HETATM 13 C C23 B3H . . . H 5 170.244 137.041 -32.578 1 65.39 ? C23 B3H 205 C 1 HETATM 14 C C41 B3H . . . H 5 167.153 138.753 -28.049 1 70.1 ? C41 B3H 205 C 1 HETATM 15 O O41 B3H . . . H 5 166.148 139.148 -29.038 1 69.88 ? O41 B3H 205 C 1 HETATM 16 C C42 B3H . . . H 5 168.008 137.628 -28.59 1 69.12 ? C42 B3H 205 C 1 HETATM 17 O O42 B3H . . . H 5 168.336 137.842 -29.927 1 67.86 ? O42 B3H 205 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 17 #