data_2HHM # _model_server_result.job_id bf3Vg_ZeJQVUg45m-pmUtw _model_server_result.datetime_utc '2024-10-20 19:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 2HHM # _exptl.entry_id 2HHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ATOM' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HHM _cell.length_a 86.2 _cell.length_b 86.2 _cell.length_c 154.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D GD GD . A GD 1 1_555 A OE1 GLU 69 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc2 D GD GD . A GD 1 1_555 A OD1 ASP 89 A ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc3 D GD GD . A GD 1 1_555 A OD2 ASP 89 A ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc4 D GD GD . A GD 1 1_555 A O ILE 91 A ILE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc5 D GD GD . A GD 1 1_555 A OG1 THR 94 A THR 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc6 D GD GD . A GD 1 1_555 C O2 SO4 . A SO4 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc7 D GD GD . A GD 1 1_555 C O3 SO4 . A SO4 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc8 D GD GD . A GD 1 1_555 G O HOH . A HOH 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc9 D GD GD . A GD 1 1_555 G O HOH . A HOH 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc10 F GD GD . B GD 1 1_555 B OE1 GLU 69 B GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc11 F GD GD . B GD 1 1_555 B OD1 ASP 89 B ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc12 F GD GD . B GD 1 1_555 B OD2 ASP 89 B ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc13 F GD GD . B GD 1 1_555 B O ILE 91 B ILE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc14 F GD GD . B GD 1 1_555 B OG1 THR 94 B THR 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc15 F GD GD . B GD 1 1_555 E O1 SO4 . B SO4 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc16 F GD GD . B GD 1 1_555 E O2 SO4 . B SO4 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc17 F GD GD . B GD 1 1_555 H O HOH . B HOH 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc18 F GD GD . B GD 1 1_555 H O HOH . B HOH 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula Gd _chem_comp.formula_weight 157.25 _chem_comp.id GD _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ATOM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2HHM _atom_sites.fract_transf_matrix[1][1] 0.011601 _atom_sites.fract_transf_matrix[1][2] 0.006698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 278 2 SO4 SO4 . D 3 GD A 1 1 1 GD GD . E 2 SO4 B 1 278 2 SO4 SO4 . F 3 GD B 1 1 1 GD GD . G 4 HOH A 1 279 5 HOH HOH . G 4 HOH A 2 280 7 HOH HOH . G 4 HOH A 3 281 9 HOH HOH . G 4 HOH A 4 282 10 HOH HOH . G 4 HOH A 5 283 11 HOH HOH . G 4 HOH A 6 284 12 HOH HOH . G 4 HOH A 7 285 13 HOH HOH . G 4 HOH A 8 286 14 HOH HOH . G 4 HOH A 9 287 16 HOH HOH . G 4 HOH A 10 288 17 HOH HOH . G 4 HOH A 11 289 19 HOH HOH . G 4 HOH A 12 290 20 HOH HOH . G 4 HOH A 13 291 21 HOH HOH . G 4 HOH A 14 292 22 HOH HOH . G 4 HOH A 15 293 23 HOH HOH . G 4 HOH A 16 294 24 HOH HOH . G 4 HOH A 17 295 25 HOH HOH . G 4 HOH A 18 296 26 HOH HOH . G 4 HOH A 19 297 27 HOH HOH . G 4 HOH A 20 298 28 HOH HOH . G 4 HOH A 21 299 30 HOH HOH . G 4 HOH A 22 300 31 HOH HOH . G 4 HOH A 23 301 32 HOH HOH . G 4 HOH A 24 302 33 HOH HOH . G 4 HOH A 25 303 34 HOH HOH . G 4 HOH A 26 304 35 HOH HOH . G 4 HOH A 27 305 36 HOH HOH . G 4 HOH A 28 306 37 HOH HOH . G 4 HOH A 29 307 38 HOH HOH . G 4 HOH A 30 308 39 HOH HOH . G 4 HOH A 31 309 40 HOH HOH . G 4 HOH A 32 310 41 HOH HOH . G 4 HOH A 33 311 42 HOH HOH . G 4 HOH A 34 312 43 HOH HOH . G 4 HOH A 35 313 44 HOH HOH . G 4 HOH A 36 314 45 HOH HOH . G 4 HOH A 37 315 46 HOH HOH . G 4 HOH A 38 316 47 HOH HOH . G 4 HOH A 39 317 48 HOH HOH . G 4 HOH A 40 318 49 HOH HOH . G 4 HOH A 41 319 50 HOH HOH . G 4 HOH A 42 320 51 HOH HOH . G 4 HOH A 43 321 52 HOH HOH . G 4 HOH A 44 322 54 HOH HOH . G 4 HOH A 45 323 56 HOH HOH . G 4 HOH A 46 324 57 HOH HOH . G 4 HOH A 47 325 58 HOH HOH . G 4 HOH A 48 326 59 HOH HOH . G 4 HOH A 49 327 61 HOH HOH . G 4 HOH A 50 328 63 HOH HOH . G 4 HOH A 51 329 64 HOH HOH . G 4 HOH A 52 330 66 HOH HOH . G 4 HOH A 53 331 67 HOH HOH . G 4 HOH A 54 332 68 HOH HOH . G 4 HOH A 55 333 69 HOH HOH . G 4 HOH A 56 334 70 HOH HOH . G 4 HOH A 57 335 71 HOH HOH . G 4 HOH A 58 336 79 HOH HOH . G 4 HOH A 59 337 90 HOH HOH . G 4 HOH A 60 338 117 HOH HOH . G 4 HOH A 61 339 130 HOH HOH . G 4 HOH A 62 340 131 HOH HOH . G 4 HOH A 63 341 133 HOH HOH . G 4 HOH A 64 342 134 HOH HOH . G 4 HOH A 65 343 135 HOH HOH . G 4 HOH A 66 344 136 HOH HOH . G 4 HOH A 67 345 137 HOH HOH . G 4 HOH A 68 346 142 HOH HOH . G 4 HOH A 69 347 143 HOH HOH . G 4 HOH A 70 348 145 HOH HOH . G 4 HOH A 71 349 147 HOH HOH . G 4 HOH A 72 350 148 HOH HOH . G 4 HOH A 73 351 149 HOH HOH . G 4 HOH A 74 352 150 HOH HOH . G 4 HOH A 75 353 152 HOH HOH . G 4 HOH A 76 354 153 HOH HOH . G 4 HOH A 77 355 154 HOH HOH . G 4 HOH A 78 356 155 HOH HOH . G 4 HOH A 79 357 156 HOH HOH . G 4 HOH A 80 358 157 HOH HOH . G 4 HOH A 81 359 158 HOH HOH . G 4 HOH A 82 360 159 HOH HOH . G 4 HOH A 83 361 160 HOH HOH . G 4 HOH A 84 362 167 HOH HOH . G 4 HOH A 85 363 168 HOH HOH . G 4 HOH A 86 364 179 HOH HOH . G 4 HOH A 87 365 180 HOH HOH . G 4 HOH A 88 366 206 HOH HOH . G 4 HOH A 89 367 207 HOH HOH . G 4 HOH A 90 368 208 HOH HOH . G 4 HOH A 91 369 209 HOH HOH . G 4 HOH A 92 370 210 HOH HOH . G 4 HOH A 93 371 211 HOH HOH . G 4 HOH A 94 372 212 HOH HOH . G 4 HOH A 95 373 213 HOH HOH . G 4 HOH A 96 374 214 HOH HOH . G 4 HOH A 97 375 215 HOH HOH . G 4 HOH A 98 376 216 HOH HOH . G 4 HOH A 99 377 217 HOH HOH . G 4 HOH A 100 378 218 HOH HOH . G 4 HOH A 101 379 219 HOH HOH . G 4 HOH A 102 380 220 HOH HOH . G 4 HOH A 103 381 221 HOH HOH . G 4 HOH A 104 382 222 HOH HOH . G 4 HOH A 105 383 223 HOH HOH . G 4 HOH A 106 384 224 HOH HOH . G 4 HOH A 107 385 225 HOH HOH . G 4 HOH A 108 386 226 HOH HOH . G 4 HOH A 109 387 227 HOH HOH . G 4 HOH A 110 388 228 HOH HOH . G 4 HOH A 111 389 229 HOH HOH . G 4 HOH A 112 390 230 HOH HOH . G 4 HOH A 113 391 232 HOH HOH . G 4 HOH A 114 392 233 HOH HOH . G 4 HOH A 115 393 236 HOH HOH . G 4 HOH A 116 394 241 HOH HOH . G 4 HOH A 117 395 242 HOH HOH . H 4 HOH B 1 279 6 HOH HOH . H 4 HOH B 2 280 8 HOH HOH . H 4 HOH B 3 281 15 HOH HOH . H 4 HOH B 4 282 18 HOH HOH . H 4 HOH B 5 283 29 HOH HOH . H 4 HOH B 6 284 53 HOH HOH . H 4 HOH B 7 285 55 HOH HOH . H 4 HOH B 8 286 60 HOH HOH . H 4 HOH B 9 287 62 HOH HOH . H 4 HOH B 10 288 65 HOH HOH . H 4 HOH B 11 289 73 HOH HOH . H 4 HOH B 12 290 74 HOH HOH . H 4 HOH B 13 291 75 HOH HOH . H 4 HOH B 14 292 76 HOH HOH . H 4 HOH B 15 293 77 HOH HOH . H 4 HOH B 16 294 78 HOH HOH . H 4 HOH B 17 295 80 HOH HOH . H 4 HOH B 18 296 81 HOH HOH . H 4 HOH B 19 297 82 HOH HOH . H 4 HOH B 20 298 83 HOH HOH . H 4 HOH B 21 299 84 HOH HOH . H 4 HOH B 22 300 85 HOH HOH . H 4 HOH B 23 301 86 HOH HOH . H 4 HOH B 24 302 87 HOH HOH . H 4 HOH B 25 303 88 HOH HOH . H 4 HOH B 26 304 89 HOH HOH . H 4 HOH B 27 305 91 HOH HOH . H 4 HOH B 28 306 92 HOH HOH . H 4 HOH B 29 307 93 HOH HOH . H 4 HOH B 30 308 94 HOH HOH . H 4 HOH B 31 309 95 HOH HOH . H 4 HOH B 32 310 96 HOH HOH . H 4 HOH B 33 311 97 HOH HOH . H 4 HOH B 34 312 98 HOH HOH . H 4 HOH B 35 313 99 HOH HOH . H 4 HOH B 36 314 100 HOH HOH . H 4 HOH B 37 315 101 HOH HOH . H 4 HOH B 38 316 102 HOH HOH . H 4 HOH B 39 317 103 HOH HOH . H 4 HOH B 40 318 104 HOH HOH . H 4 HOH B 41 319 105 HOH HOH . H 4 HOH B 42 320 106 HOH HOH . H 4 HOH B 43 321 107 HOH HOH . H 4 HOH B 44 322 108 HOH HOH . H 4 HOH B 45 323 110 HOH HOH . H 4 HOH B 46 324 111 HOH HOH . H 4 HOH B 47 325 112 HOH HOH . H 4 HOH B 48 326 113 HOH HOH . H 4 HOH B 49 327 114 HOH HOH . H 4 HOH B 50 328 115 HOH HOH . H 4 HOH B 51 329 116 HOH HOH . H 4 HOH B 52 330 118 HOH HOH . H 4 HOH B 53 331 119 HOH HOH . H 4 HOH B 54 332 120 HOH HOH . H 4 HOH B 55 333 121 HOH HOH . H 4 HOH B 56 334 122 HOH HOH . H 4 HOH B 57 335 123 HOH HOH . H 4 HOH B 58 336 124 HOH HOH . H 4 HOH B 59 337 125 HOH HOH . H 4 HOH B 60 338 126 HOH HOH . H 4 HOH B 61 339 127 HOH HOH . H 4 HOH B 62 340 128 HOH HOH . H 4 HOH B 63 341 129 HOH HOH . H 4 HOH B 64 342 132 HOH HOH . H 4 HOH B 65 343 138 HOH HOH . H 4 HOH B 66 344 139 HOH HOH . H 4 HOH B 67 345 140 HOH HOH . H 4 HOH B 68 346 141 HOH HOH . H 4 HOH B 69 347 144 HOH HOH . H 4 HOH B 70 348 146 HOH HOH . H 4 HOH B 71 349 151 HOH HOH . H 4 HOH B 72 350 161 HOH HOH . H 4 HOH B 73 351 162 HOH HOH . H 4 HOH B 74 352 163 HOH HOH . H 4 HOH B 75 353 164 HOH HOH . H 4 HOH B 76 354 165 HOH HOH . H 4 HOH B 77 355 166 HOH HOH . H 4 HOH B 78 356 169 HOH HOH . H 4 HOH B 79 357 170 HOH HOH . H 4 HOH B 80 358 171 HOH HOH . H 4 HOH B 81 359 172 HOH HOH . H 4 HOH B 82 360 173 HOH HOH . H 4 HOH B 83 361 174 HOH HOH . H 4 HOH B 84 362 175 HOH HOH . H 4 HOH B 85 363 176 HOH HOH . H 4 HOH B 86 364 177 HOH HOH . H 4 HOH B 87 365 178 HOH HOH . H 4 HOH B 88 366 181 HOH HOH . H 4 HOH B 89 367 182 HOH HOH . H 4 HOH B 90 368 183 HOH HOH . H 4 HOH B 91 369 184 HOH HOH . H 4 HOH B 92 370 185 HOH HOH . H 4 HOH B 93 371 186 HOH HOH . H 4 HOH B 94 372 187 HOH HOH . H 4 HOH B 95 373 188 HOH HOH . H 4 HOH B 96 374 189 HOH HOH . H 4 HOH B 97 375 190 HOH HOH . H 4 HOH B 98 376 191 HOH HOH . H 4 HOH B 99 377 192 HOH HOH . H 4 HOH B 100 378 193 HOH HOH . H 4 HOH B 101 379 194 HOH HOH . H 4 HOH B 102 380 195 HOH HOH . H 4 HOH B 103 381 196 HOH HOH . H 4 HOH B 104 382 197 HOH HOH . H 4 HOH B 105 383 198 HOH HOH . H 4 HOH B 106 384 199 HOH HOH . H 4 HOH B 107 385 200 HOH HOH . H 4 HOH B 108 386 201 HOH HOH . H 4 HOH B 109 387 202 HOH HOH . H 4 HOH B 110 388 203 HOH HOH . H 4 HOH B 111 389 204 HOH HOH . H 4 HOH B 112 390 205 HOH HOH . H 4 HOH B 113 391 231 HOH HOH . H 4 HOH B 114 392 234 HOH HOH . H 4 HOH B 115 393 235 HOH HOH . H 4 HOH B 116 394 237 HOH HOH . H 4 HOH B 117 395 238 HOH HOH . H 4 HOH B 118 396 239 HOH HOH . H 4 HOH B 119 397 240 HOH HOH . H 4 HOH B 120 398 243 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -11.281 _atom_site.Cartn_y 53.92 _atom_site.Cartn_z 38.793 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD _atom_site.auth_seq_id 1 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #