data_2HI7 # _model_server_result.job_id MA3ZNDzmN2DWbqipVxLhqg _model_server_result.datetime_utc '2024-12-24 13:03:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hi7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2HI7 # _exptl.entry_id 2HI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.29 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HI7 _cell.length_a 165.5 _cell.length_b 165.5 _cell.length_c 65.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 B SG CYS 104 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 B SG CYS 41 B CYS 41 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 C ZN ZN . A ZN 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 A NE2 HIS 41 A HIS 41 7_555 C ZN ZN . A ZN 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 UQ1 doub 356 n n C1 C2 UQ1 sing 357 n n C1 C6 UQ1 sing 358 n n C2 O2 UQ1 sing 359 n n C2 C3 UQ1 doub 360 n n O2 CM2 UQ1 sing 361 n n CM2 HM21 UQ1 sing 362 n n CM2 HM22 UQ1 sing 363 n n CM2 HM23 UQ1 sing 364 n n C3 O3 UQ1 sing 365 n n C3 C4 UQ1 sing 366 n n O3 CM3 UQ1 sing 367 n n CM3 HM31 UQ1 sing 368 n n CM3 HM32 UQ1 sing 369 n n CM3 HM33 UQ1 sing 370 n n C4 O4 UQ1 doub 371 n n C4 C5 UQ1 sing 372 n n C5 CM5 UQ1 sing 373 n n C5 C6 UQ1 doub 374 n n CM5 HM51 UQ1 sing 375 n n CM5 HM52 UQ1 sing 376 n n CM5 HM53 UQ1 sing 377 n n C6 C7 UQ1 sing 378 n n C7 C8 UQ1 sing 379 n n C7 H71 UQ1 sing 380 n n C7 H72 UQ1 sing 381 n n C8 C9 UQ1 doub 382 n n C8 H8 UQ1 sing 383 n n C9 C10 UQ1 sing 384 n n C9 C11 UQ1 sing 385 n n C10 H101 UQ1 sing 386 n n C10 H102 UQ1 sing 387 n n C10 H103 UQ1 sing 388 n n C11 H111 UQ1 sing 389 n n C11 H112 UQ1 sing 390 n n C11 H113 UQ1 sing 391 n n # _atom_sites.entry_id 2HI7 _atom_sites.fract_transf_matrix[1][1] 0.006042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 190 1 ZN ZN . D 4 UQ1 B 1 501 501 UQ1 UQ1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . D 4 3.505 34.439 19.192 1 201.44 ? C1 UQ1 501 B 1 HETATM 2 O O1 UQ1 . . . D 4 2.804 33.542 19.697 1 201.68 ? O1 UQ1 501 B 1 HETATM 3 C C2 UQ1 . . . D 4 4.911 34.111 18.859 1 201.45 ? C2 UQ1 501 B 1 HETATM 4 O O2 UQ1 . . . D 4 5.347 32.835 19.109 1 201.39 ? O2 UQ1 501 B 1 HETATM 5 C CM2 UQ1 . . . D 4 5.398 32.314 20.438 1 200.97 ? CM2 UQ1 501 B 1 HETATM 6 C C3 UQ1 . . . D 4 5.802 35.151 18.254 1 201.85 ? C3 UQ1 501 B 1 HETATM 7 O O3 UQ1 . . . D 4 7.119 34.899 17.93 1 201.9 ? O3 UQ1 501 B 1 HETATM 8 C CM3 UQ1 . . . D 4 7.47 34.021 16.861 1 201.98 ? CM3 UQ1 501 B 1 HETATM 9 C C4 UQ1 . . . D 4 5.262 36.516 18.004 1 201.84 ? C4 UQ1 501 B 1 HETATM 10 O O4 UQ1 . . . D 4 6.022 37.38 17.505 1 201.68 ? O4 UQ1 501 B 1 HETATM 11 C C5 UQ1 . . . D 4 3.842 36.843 18.351 1 201.8 ? C5 UQ1 501 B 1 HETATM 12 C CM5 UQ1 . . . D 4 3.286 38.225 18.098 1 201.8 ? CM5 UQ1 501 B 1 HETATM 13 C C6 UQ1 . . . D 4 2.952 35.801 18.944 1 201.62 ? C6 UQ1 501 B 1 HETATM 14 C C7 UQ1 . . . D 4 1.507 36.151 19.285 1 201.54 ? C7 UQ1 501 B 1 HETATM 15 C C8 UQ1 . . . D 4 0.525 35.149 18.707 1 200.77 ? C8 UQ1 501 B 1 HETATM 16 C C9 UQ1 . . . D 4 -0.728 35.455 18.326 1 200.3 ? C9 UQ1 501 B 1 HETATM 17 C C10 UQ1 . . . D 4 -1.597 34.365 17.769 1 200.45 ? C10 UQ1 501 B 1 HETATM 18 C C11 UQ1 . . . D 4 -1.271 36.853 18.437 1 200 ? C11 UQ1 501 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #