data_2HJE # _model_server_result.job_id qvhfqSbj0wRCE9PPpifqjg _model_server_result.datetime_utc '2024-11-05 15:29:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":275}' # _entry.id 2HJE # _exptl.entry_id 2HJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.18 _cell.angle_beta 86.14 _cell.angle_gamma 67.28 _cell.entry_id 2HJE _cell.length_a 33.446 _cell.length_b 36.152 _cell.length_c 49.185 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 11 A HIS 61 1_555 D NI NI . A NI 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 A OD2 ASP 15 A ASP 65 1_555 D NI NI . A NI 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 A NE2 HIS 60 A HIS 110 1_555 E NI NI . A NI 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A ND1 HIS 70 A HIS 120 1_564 B NI NI . A NI 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc5 A NE2 HIS 81 A HIS 131 1_555 C NI NI . A NI 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc6 A OD1 ASP 159 A ASP 209 1_555 B NI NI . A NI 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc7 A OD2 ASP 221 A ASP 271 1_555 B NI NI . A NI 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc8 B NI NI . A NI 272 1_555 F O HOH . A HOH 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc9 B NI NI . A NI 272 1_555 F O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc10 B NI NI . A NI 272 1_555 F O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc11 C NI NI . A NI 273 1_555 F O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc12 C NI NI . A NI 273 1_555 F O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc13 C NI NI . A NI 273 1_555 F O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc14 C NI NI . A NI 273 1_555 F O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc15 C NI NI . A NI 273 1_555 F O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc16 D NI NI . A NI 274 1_555 F O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc17 D NI NI . A NI 274 1_555 F O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc18 E NI NI . A NI 275 1_555 F O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc19 E NI NI . A NI 275 1_555 F O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc20 E NI NI . A NI 275 1_555 F O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc21 E NI NI . A NI 275 1_555 F O HOH . A HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2HJE _atom_sites.fract_transf_matrix[1][1] 0.029899 _atom_sites.fract_transf_matrix[1][2] -0.012519 _atom_sites.fract_transf_matrix[1][3] -0.000524 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029988 _atom_sites.fract_transf_matrix[2][3] -0.003612 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 272 201 NI NI . C 2 NI A 1 273 202 NI NI . D 2 NI A 1 274 203 NI NI . E 2 NI A 1 275 204 NI NI . F 3 HOH A 1 276 1 HOH HOH . F 3 HOH A 2 277 2 HOH HOH . F 3 HOH A 3 278 3 HOH HOH . F 3 HOH A 4 279 4 HOH HOH . F 3 HOH A 5 280 5 HOH HOH . F 3 HOH A 6 281 6 HOH HOH . F 3 HOH A 7 282 7 HOH HOH . F 3 HOH A 8 283 8 HOH HOH . F 3 HOH A 9 284 9 HOH HOH . F 3 HOH A 10 285 10 HOH HOH . F 3 HOH A 11 286 11 HOH HOH . F 3 HOH A 12 287 12 HOH HOH . F 3 HOH A 13 288 13 HOH HOH . F 3 HOH A 14 289 14 HOH HOH . F 3 HOH A 15 290 15 HOH HOH . F 3 HOH A 16 291 16 HOH HOH . F 3 HOH A 17 292 17 HOH HOH . F 3 HOH A 18 293 18 HOH HOH . F 3 HOH A 19 294 19 HOH HOH . F 3 HOH A 20 295 20 HOH HOH . F 3 HOH A 21 296 21 HOH HOH . F 3 HOH A 22 297 22 HOH HOH . F 3 HOH A 23 298 23 HOH HOH . F 3 HOH A 24 299 24 HOH HOH . F 3 HOH A 25 300 25 HOH HOH . F 3 HOH A 26 301 26 HOH HOH . F 3 HOH A 27 302 27 HOH HOH . F 3 HOH A 28 303 28 HOH HOH . F 3 HOH A 29 304 29 HOH HOH . F 3 HOH A 30 305 30 HOH HOH . F 3 HOH A 31 306 31 HOH HOH . F 3 HOH A 32 307 32 HOH HOH . F 3 HOH A 33 308 33 HOH HOH . F 3 HOH A 34 309 34 HOH HOH . F 3 HOH A 35 310 35 HOH HOH . F 3 HOH A 36 311 36 HOH HOH . F 3 HOH A 37 312 37 HOH HOH . F 3 HOH A 38 313 38 HOH HOH . F 3 HOH A 39 314 39 HOH HOH . F 3 HOH A 40 315 40 HOH HOH . F 3 HOH A 41 316 41 HOH HOH . F 3 HOH A 42 317 42 HOH HOH . F 3 HOH A 43 318 43 HOH HOH . F 3 HOH A 44 319 44 HOH HOH . F 3 HOH A 45 320 45 HOH HOH . F 3 HOH A 46 321 46 HOH HOH . F 3 HOH A 47 322 47 HOH HOH . F 3 HOH A 48 323 48 HOH HOH . F 3 HOH A 49 324 49 HOH HOH . F 3 HOH A 50 325 50 HOH HOH . F 3 HOH A 51 326 51 HOH HOH . F 3 HOH A 52 327 52 HOH HOH . F 3 HOH A 53 328 53 HOH HOH . F 3 HOH A 54 329 54 HOH HOH . F 3 HOH A 55 330 55 HOH HOH . F 3 HOH A 56 331 56 HOH HOH . F 3 HOH A 57 332 57 HOH HOH . F 3 HOH A 58 333 58 HOH HOH . F 3 HOH A 59 334 59 HOH HOH . F 3 HOH A 60 335 60 HOH HOH . F 3 HOH A 61 336 61 HOH HOH . F 3 HOH A 62 337 62 HOH HOH . F 3 HOH A 63 338 63 HOH HOH . F 3 HOH A 64 339 64 HOH HOH . F 3 HOH A 65 340 65 HOH HOH . F 3 HOH A 66 341 66 HOH HOH . F 3 HOH A 67 342 67 HOH HOH . F 3 HOH A 68 343 68 HOH HOH . F 3 HOH A 69 344 69 HOH HOH . F 3 HOH A 70 345 70 HOH HOH . F 3 HOH A 71 346 71 HOH HOH . F 3 HOH A 72 347 72 HOH HOH . F 3 HOH A 73 348 73 HOH HOH . F 3 HOH A 74 349 74 HOH HOH . F 3 HOH A 75 350 75 HOH HOH . F 3 HOH A 76 351 76 HOH HOH . F 3 HOH A 77 352 77 HOH HOH . F 3 HOH A 78 353 78 HOH HOH . F 3 HOH A 79 354 79 HOH HOH . F 3 HOH A 80 355 80 HOH HOH . F 3 HOH A 81 356 81 HOH HOH . F 3 HOH A 82 357 82 HOH HOH . F 3 HOH A 83 358 83 HOH HOH . F 3 HOH A 84 359 84 HOH HOH . F 3 HOH A 85 360 85 HOH HOH . F 3 HOH A 86 361 86 HOH HOH . F 3 HOH A 87 362 87 HOH HOH . F 3 HOH A 88 363 88 HOH HOH . F 3 HOH A 89 364 89 HOH HOH . F 3 HOH A 90 365 90 HOH HOH . F 3 HOH A 91 366 91 HOH HOH . F 3 HOH A 92 367 92 HOH HOH . F 3 HOH A 93 368 93 HOH HOH . F 3 HOH A 94 369 94 HOH HOH . F 3 HOH A 95 370 95 HOH HOH . F 3 HOH A 96 371 96 HOH HOH . F 3 HOH A 97 372 97 HOH HOH . F 3 HOH A 98 373 98 HOH HOH . F 3 HOH A 99 374 99 HOH HOH . F 3 HOH A 100 375 100 HOH HOH . F 3 HOH A 101 376 101 HOH HOH . F 3 HOH A 102 377 102 HOH HOH . F 3 HOH A 103 378 103 HOH HOH . F 3 HOH A 104 379 104 HOH HOH . F 3 HOH A 105 380 105 HOH HOH . F 3 HOH A 106 381 106 HOH HOH . F 3 HOH A 107 382 107 HOH HOH . F 3 HOH A 108 383 108 HOH HOH . F 3 HOH A 109 384 109 HOH HOH . F 3 HOH A 110 385 110 HOH HOH . F 3 HOH A 111 386 111 HOH HOH . F 3 HOH A 112 387 112 HOH HOH . F 3 HOH A 113 388 113 HOH HOH . F 3 HOH A 114 389 114 HOH HOH . F 3 HOH A 115 390 115 HOH HOH . F 3 HOH A 116 391 116 HOH HOH . F 3 HOH A 117 392 117 HOH HOH . F 3 HOH A 118 393 118 HOH HOH . F 3 HOH A 119 394 119 HOH HOH . F 3 HOH A 120 395 120 HOH HOH . F 3 HOH A 121 396 121 HOH HOH . F 3 HOH A 122 397 122 HOH HOH . F 3 HOH A 123 398 123 HOH HOH . F 3 HOH A 124 399 124 HOH HOH . F 3 HOH A 125 400 125 HOH HOH . F 3 HOH A 126 401 126 HOH HOH . F 3 HOH A 127 402 127 HOH HOH . F 3 HOH A 128 403 128 HOH HOH . F 3 HOH A 129 404 129 HOH HOH . F 3 HOH A 130 405 130 HOH HOH . F 3 HOH A 131 406 131 HOH HOH . F 3 HOH A 132 407 132 HOH HOH . F 3 HOH A 133 408 133 HOH HOH . F 3 HOH A 134 409 134 HOH HOH . F 3 HOH A 135 410 135 HOH HOH . F 3 HOH A 136 411 136 HOH HOH . F 3 HOH A 137 412 137 HOH HOH . F 3 HOH A 138 413 138 HOH HOH . F 3 HOH A 139 414 139 HOH HOH . F 3 HOH A 140 415 140 HOH HOH . F 3 HOH A 141 416 141 HOH HOH . F 3 HOH A 142 417 142 HOH HOH . F 3 HOH A 143 418 143 HOH HOH . F 3 HOH A 144 419 144 HOH HOH . F 3 HOH A 145 420 145 HOH HOH . F 3 HOH A 146 421 146 HOH HOH . F 3 HOH A 147 422 147 HOH HOH . F 3 HOH A 148 423 148 HOH HOH . F 3 HOH A 149 424 149 HOH HOH . F 3 HOH A 150 425 150 HOH HOH . F 3 HOH A 151 426 151 HOH HOH . F 3 HOH A 152 427 152 HOH HOH . F 3 HOH A 153 428 153 HOH HOH . F 3 HOH A 154 429 154 HOH HOH . F 3 HOH A 155 430 155 HOH HOH . F 3 HOH A 156 431 156 HOH HOH . F 3 HOH A 157 432 157 HOH HOH . F 3 HOH A 158 433 158 HOH HOH . F 3 HOH A 159 434 159 HOH HOH . F 3 HOH A 160 435 160 HOH HOH . F 3 HOH A 161 436 161 HOH HOH . F 3 HOH A 162 437 162 HOH HOH . F 3 HOH A 163 438 163 HOH HOH . F 3 HOH A 164 439 164 HOH HOH . F 3 HOH A 165 440 165 HOH HOH . F 3 HOH A 166 441 166 HOH HOH . F 3 HOH A 167 442 167 HOH HOH . F 3 HOH A 168 443 168 HOH HOH . F 3 HOH A 169 444 169 HOH HOH . F 3 HOH A 170 445 170 HOH HOH . F 3 HOH A 171 446 171 HOH HOH . F 3 HOH A 172 447 172 HOH HOH . F 3 HOH A 173 448 173 HOH HOH . F 3 HOH A 174 449 174 HOH HOH . F 3 HOH A 175 450 175 HOH HOH . F 3 HOH A 176 451 176 HOH HOH . F 3 HOH A 177 452 177 HOH HOH . F 3 HOH A 178 453 178 HOH HOH . F 3 HOH A 179 454 179 HOH HOH . F 3 HOH A 180 455 180 HOH HOH . F 3 HOH A 181 456 181 HOH HOH . F 3 HOH A 182 457 182 HOH HOH . F 3 HOH A 183 458 183 HOH HOH . F 3 HOH A 184 459 184 HOH HOH . F 3 HOH A 185 460 185 HOH HOH . F 3 HOH A 186 461 186 HOH HOH . F 3 HOH A 187 462 187 HOH HOH . F 3 HOH A 188 463 188 HOH HOH . F 3 HOH A 189 464 189 HOH HOH . F 3 HOH A 190 465 190 HOH HOH . F 3 HOH A 191 466 191 HOH HOH . F 3 HOH A 192 467 192 HOH HOH . F 3 HOH A 193 468 193 HOH HOH . F 3 HOH A 194 469 194 HOH HOH . F 3 HOH A 195 470 195 HOH HOH . F 3 HOH A 196 471 196 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.292 _atom_site.Cartn_y -5.557 _atom_site.Cartn_z -11.57 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 275 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #