data_2HK9
#
_model_server_result.job_id            qRL7TkldEfn5e9tzRKDSqQ 
_model_server_result.datetime_utc      '2024-12-26 22:39:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hk9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1202}' 
#
_entry.id    2HK9 
#
_exptl.entry_id    2HK9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              174.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HK9 
_cell.length_a            71.999 
_cell.length_b            119.803 
_cell.length_c            128.872 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HK9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C7 H10 O5' 
_chem_comp.formula_weight    174.151 
_chem_comp.id                SKM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SHIKIMATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 C8 SKM sing 419 n n 
O12 H12 SKM sing 420 n n 
C8 C6 SKM sing 421 n n 
C8 C9 SKM sing 422 n n 
C8 H8 SKM sing 423 n n 
C6 O7 SKM sing 424 n n 
C6 C5 SKM sing 425 n n 
C6 H6 SKM sing 426 n n 
O7 HO7 SKM sing 427 n n 
C5 C4 SKM sing 428 n n 
C5 H51 SKM sing 429 n n 
C5 H52 SKM sing 430 n n 
C4 C1 SKM sing 431 n n 
C4 C10 SKM doub 432 n n 
C1 O2 SKM sing 433 n n 
C1 O3 SKM doub 434 n n 
O2 HO2 SKM sing 435 n n 
C10 C9 SKM sing 436 n n 
C10 H10 SKM sing 437 n n 
C9 O11 SKM sing 438 n n 
C9 H9 SKM sing 439 n n 
O11 H11 SKM sing 440 n n 
#
_atom_sites.entry_id                     2HK9 
_atom_sites.fract_transf_matrix[1][1]    0.013889 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00776 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ATR A 1 1101 1101 ATR ATR . 
F 3 SKM A 1 1102 1102 SKM SKM . 
G 4 NAP B 1 1201 1201 NAP NAP . 
H 3 SKM B 1 1202 1202 SKM SKM . 
I 4 NAP C 1 1301 1301 NAP NAP . 
J 3 SKM C 1 1302 1302 SKM SKM . 
K 4 NAP D 1 1401 1401 NAP NAP . 
L 3 SKM D 1 1402 1402 SKM SKM . 
M 5 HOH A 1 1103 1 HOH HOH . 
M 5 HOH A 2 1104 2 HOH HOH . 
M 5 HOH A 3 1105 3 HOH HOH . 
M 5 HOH A 4 1106 5 HOH HOH . 
M 5 HOH A 5 1107 9 HOH HOH . 
M 5 HOH A 6 1108 10 HOH HOH . 
M 5 HOH A 7 1109 11 HOH HOH . 
M 5 HOH A 8 1110 12 HOH HOH . 
M 5 HOH A 9 1111 13 HOH HOH . 
M 5 HOH A 10 1112 15 HOH HOH . 
M 5 HOH A 11 1113 16 HOH HOH . 
M 5 HOH A 12 1114 17 HOH HOH . 
M 5 HOH A 13 1115 18 HOH HOH . 
M 5 HOH A 14 1116 19 HOH HOH . 
M 5 HOH A 15 1117 20 HOH HOH . 
M 5 HOH A 16 1118 21 HOH HOH . 
M 5 HOH A 17 1119 22 HOH HOH . 
M 5 HOH A 18 1120 23 HOH HOH . 
M 5 HOH A 19 1121 24 HOH HOH . 
M 5 HOH A 20 1122 25 HOH HOH . 
M 5 HOH A 21 1123 26 HOH HOH . 
M 5 HOH A 22 1124 35 HOH HOH . 
M 5 HOH A 23 1125 42 HOH HOH . 
M 5 HOH A 24 1126 47 HOH HOH . 
M 5 HOH A 25 1127 50 HOH HOH . 
M 5 HOH A 26 1128 53 HOH HOH . 
M 5 HOH A 27 1129 54 HOH HOH . 
M 5 HOH A 28 1130 61 HOH HOH . 
M 5 HOH A 29 1131 62 HOH HOH . 
M 5 HOH A 30 1132 63 HOH HOH . 
M 5 HOH A 31 1133 64 HOH HOH . 
M 5 HOH A 32 1134 66 HOH HOH . 
M 5 HOH A 33 1135 101 HOH HOH . 
M 5 HOH A 34 1136 102 HOH HOH . 
M 5 HOH A 35 1137 103 HOH HOH . 
M 5 HOH A 36 1138 104 HOH HOH . 
M 5 HOH A 37 1139 105 HOH HOH . 
M 5 HOH A 38 1140 110 HOH HOH . 
M 5 HOH A 39 1141 137 HOH HOH . 
M 5 HOH A 40 1142 138 HOH HOH . 
M 5 HOH A 41 1143 139 HOH HOH . 
M 5 HOH A 42 1144 140 HOH HOH . 
M 5 HOH A 43 1145 141 HOH HOH . 
M 5 HOH A 44 1146 142 HOH HOH . 
M 5 HOH A 45 1147 168 HOH HOH . 
M 5 HOH A 46 1148 169 HOH HOH . 
M 5 HOH A 47 1149 170 HOH HOH . 
M 5 HOH A 48 1150 171 HOH HOH . 
M 5 HOH A 49 1151 172 HOH HOH . 
M 5 HOH A 50 1152 173 HOH HOH . 
M 5 HOH A 51 1153 176 HOH HOH . 
M 5 HOH A 52 1154 177 HOH HOH . 
M 5 HOH A 53 1155 184 HOH HOH . 
M 5 HOH A 54 1156 199 HOH HOH . 
M 5 HOH A 55 1157 200 HOH HOH . 
M 5 HOH A 56 1158 201 HOH HOH . 
N 5 HOH B 1 1203 6 HOH HOH . 
N 5 HOH B 2 1204 7 HOH HOH . 
N 5 HOH B 3 1205 8 HOH HOH . 
N 5 HOH B 4 1206 29 HOH HOH . 
N 5 HOH B 5 1207 31 HOH HOH . 
N 5 HOH B 6 1208 40 HOH HOH . 
N 5 HOH B 7 1209 58 HOH HOH . 
N 5 HOH B 8 1210 60 HOH HOH . 
N 5 HOH B 9 1211 65 HOH HOH . 
N 5 HOH B 10 1212 67 HOH HOH . 
N 5 HOH B 11 1213 68 HOH HOH . 
N 5 HOH B 12 1214 69 HOH HOH . 
N 5 HOH B 13 1215 70 HOH HOH . 
N 5 HOH B 14 1216 71 HOH HOH . 
N 5 HOH B 15 1217 72 HOH HOH . 
N 5 HOH B 16 1218 73 HOH HOH . 
N 5 HOH B 17 1219 74 HOH HOH . 
N 5 HOH B 18 1220 75 HOH HOH . 
N 5 HOH B 19 1221 76 HOH HOH . 
N 5 HOH B 20 1222 77 HOH HOH . 
N 5 HOH B 21 1223 78 HOH HOH . 
N 5 HOH B 22 1224 106 HOH HOH . 
N 5 HOH B 23 1225 107 HOH HOH . 
N 5 HOH B 24 1226 108 HOH HOH . 
N 5 HOH B 25 1227 109 HOH HOH . 
N 5 HOH B 26 1228 111 HOH HOH . 
N 5 HOH B 27 1229 112 HOH HOH . 
N 5 HOH B 28 1230 113 HOH HOH . 
N 5 HOH B 29 1231 119 HOH HOH . 
N 5 HOH B 30 1232 136 HOH HOH . 
N 5 HOH B 31 1233 143 HOH HOH . 
N 5 HOH B 32 1234 144 HOH HOH . 
N 5 HOH B 33 1235 146 HOH HOH . 
N 5 HOH B 34 1236 147 HOH HOH . 
N 5 HOH B 35 1237 148 HOH HOH . 
N 5 HOH B 36 1238 155 HOH HOH . 
N 5 HOH B 37 1239 167 HOH HOH . 
N 5 HOH B 38 1240 174 HOH HOH . 
N 5 HOH B 39 1241 178 HOH HOH . 
N 5 HOH B 40 1242 179 HOH HOH . 
N 5 HOH B 41 1243 185 HOH HOH . 
N 5 HOH B 42 1244 186 HOH HOH . 
N 5 HOH B 43 1245 187 HOH HOH . 
N 5 HOH B 44 1246 188 HOH HOH . 
N 5 HOH B 45 1247 189 HOH HOH . 
N 5 HOH B 46 1248 190 HOH HOH . 
O 5 HOH C 1 1303 4 HOH HOH . 
O 5 HOH C 2 1304 14 HOH HOH . 
O 5 HOH C 3 1305 28 HOH HOH . 
O 5 HOH C 4 1306 32 HOH HOH . 
O 5 HOH C 5 1307 34 HOH HOH . 
O 5 HOH C 6 1308 36 HOH HOH . 
O 5 HOH C 7 1309 38 HOH HOH . 
O 5 HOH C 8 1310 39 HOH HOH . 
O 5 HOH C 9 1311 41 HOH HOH . 
O 5 HOH C 10 1312 45 HOH HOH . 
O 5 HOH C 11 1313 46 HOH HOH . 
O 5 HOH C 12 1314 49 HOH HOH . 
O 5 HOH C 13 1315 51 HOH HOH . 
O 5 HOH C 14 1316 52 HOH HOH . 
O 5 HOH C 15 1317 59 HOH HOH . 
O 5 HOH C 16 1318 79 HOH HOH . 
O 5 HOH C 17 1319 80 HOH HOH . 
O 5 HOH C 18 1320 82 HOH HOH . 
O 5 HOH C 19 1321 83 HOH HOH . 
O 5 HOH C 20 1322 84 HOH HOH . 
O 5 HOH C 21 1323 85 HOH HOH . 
O 5 HOH C 22 1324 86 HOH HOH . 
O 5 HOH C 23 1325 87 HOH HOH . 
O 5 HOH C 24 1326 88 HOH HOH . 
O 5 HOH C 25 1327 115 HOH HOH . 
O 5 HOH C 26 1328 116 HOH HOH . 
O 5 HOH C 27 1329 117 HOH HOH . 
O 5 HOH C 28 1330 118 HOH HOH . 
O 5 HOH C 29 1331 120 HOH HOH . 
O 5 HOH C 30 1332 121 HOH HOH . 
O 5 HOH C 31 1333 122 HOH HOH . 
O 5 HOH C 32 1334 123 HOH HOH . 
O 5 HOH C 33 1335 124 HOH HOH . 
O 5 HOH C 34 1336 125 HOH HOH . 
O 5 HOH C 35 1337 126 HOH HOH . 
O 5 HOH C 36 1338 127 HOH HOH . 
O 5 HOH C 37 1339 145 HOH HOH . 
O 5 HOH C 38 1340 149 HOH HOH . 
O 5 HOH C 39 1341 150 HOH HOH . 
O 5 HOH C 40 1342 151 HOH HOH . 
O 5 HOH C 41 1343 152 HOH HOH . 
O 5 HOH C 42 1344 153 HOH HOH . 
O 5 HOH C 43 1345 154 HOH HOH . 
O 5 HOH C 44 1346 156 HOH HOH . 
O 5 HOH C 45 1347 157 HOH HOH . 
O 5 HOH C 46 1348 166 HOH HOH . 
O 5 HOH C 47 1349 175 HOH HOH . 
O 5 HOH C 48 1350 180 HOH HOH . 
O 5 HOH C 49 1351 181 HOH HOH . 
O 5 HOH C 50 1352 191 HOH HOH . 
O 5 HOH C 51 1353 192 HOH HOH . 
O 5 HOH C 52 1354 193 HOH HOH . 
O 5 HOH C 53 1355 194 HOH HOH . 
O 5 HOH C 54 1356 195 HOH HOH . 
O 5 HOH C 55 1357 196 HOH HOH . 
O 5 HOH C 56 1358 197 HOH HOH . 
P 5 HOH D 1 1403 27 HOH HOH . 
P 5 HOH D 2 1404 30 HOH HOH . 
P 5 HOH D 3 1405 33 HOH HOH . 
P 5 HOH D 4 1406 37 HOH HOH . 
P 5 HOH D 5 1407 43 HOH HOH . 
P 5 HOH D 6 1408 44 HOH HOH . 
P 5 HOH D 7 1409 48 HOH HOH . 
P 5 HOH D 8 1410 55 HOH HOH . 
P 5 HOH D 9 1411 56 HOH HOH . 
P 5 HOH D 10 1412 57 HOH HOH . 
P 5 HOH D 11 1413 81 HOH HOH . 
P 5 HOH D 12 1414 89 HOH HOH . 
P 5 HOH D 13 1415 90 HOH HOH . 
P 5 HOH D 14 1416 91 HOH HOH . 
P 5 HOH D 15 1417 92 HOH HOH . 
P 5 HOH D 16 1418 93 HOH HOH . 
P 5 HOH D 17 1419 94 HOH HOH . 
P 5 HOH D 18 1420 95 HOH HOH . 
P 5 HOH D 19 1421 96 HOH HOH . 
P 5 HOH D 20 1422 97 HOH HOH . 
P 5 HOH D 21 1423 98 HOH HOH . 
P 5 HOH D 22 1424 99 HOH HOH . 
P 5 HOH D 23 1425 100 HOH HOH . 
P 5 HOH D 24 1426 114 HOH HOH . 
P 5 HOH D 25 1427 128 HOH HOH . 
P 5 HOH D 26 1428 129 HOH HOH . 
P 5 HOH D 27 1429 130 HOH HOH . 
P 5 HOH D 28 1430 131 HOH HOH . 
P 5 HOH D 29 1431 132 HOH HOH . 
P 5 HOH D 30 1432 133 HOH HOH . 
P 5 HOH D 31 1433 134 HOH HOH . 
P 5 HOH D 32 1434 135 HOH HOH . 
P 5 HOH D 33 1435 158 HOH HOH . 
P 5 HOH D 34 1436 159 HOH HOH . 
P 5 HOH D 35 1437 160 HOH HOH . 
P 5 HOH D 36 1438 161 HOH HOH . 
P 5 HOH D 37 1439 162 HOH HOH . 
P 5 HOH D 38 1440 163 HOH HOH . 
P 5 HOH D 39 1441 164 HOH HOH . 
P 5 HOH D 40 1442 165 HOH HOH . 
P 5 HOH D 41 1443 182 HOH HOH . 
P 5 HOH D 42 1444 183 HOH HOH . 
P 5 HOH D 43 1445 198 HOH HOH . 
P 5 HOH D 44 1446 202 HOH HOH . 
P 5 HOH D 45 1447 203 HOH HOH . 
P 5 HOH D 46 1448 204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 SKM . . . H 3 48.087 89.365 35.513 1 54.46 ? O12 SKM 1202 B 1 
HETATM 2 C C8 SKM . . . H 3 47.514 88.098 35.096 1 49.83 ? C8 SKM 1202 B 1 
HETATM 3 C C6 SKM . . . H 3 47.321 87.181 36.284 1 47.42 ? C6 SKM 1202 B 1 
HETATM 4 O O7 SKM . . . H 3 48.617 86.863 36.966 1 50.59 ? O7 SKM 1202 B 1 
HETATM 5 C C5 SKM . . . H 3 46.74 85.856 35.734 1 47.53 ? C5 SKM 1202 B 1 
HETATM 6 C C4 SKM . . . H 3 45.487 85.98 34.982 1 52.89 ? C4 SKM 1202 B 1 
HETATM 7 C C1 SKM . . . H 3 44.54 84.865 34.944 1 47.09 ? C1 SKM 1202 B 1 
HETATM 8 O O2 SKM . . . H 3 43.44 84.965 34.232 1 32.99 ? O2 SKM 1202 B 1 
HETATM 9 O O3 SKM . . . H 3 44.91 83.846 35.651 1 41.78 ? O3 SKM 1202 B 1 
HETATM 10 C C10 SKM . . . H 3 45.153 87.213 34.378 1 52.19 ? C10 SKM 1202 B 1 
HETATM 11 C C9 SKM . . . H 3 46.137 88.412 34.484 1 55.33 ? C9 SKM 1202 B 1 
HETATM 12 O O11 SKM . . . H 3 45.547 89.462 35.322 1 58.73 ? O11 SKM 1202 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           12 
#