data_2HK9 # _model_server_result.job_id 13ILpuLpV8A68KoUW4vgTA _model_server_result.datetime_utc '2024-12-26 22:09:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1402}' # _entry.id 2HK9 # _exptl.entry_id 2HK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HK9 _cell.length_a 71.999 _cell.length_b 119.803 _cell.length_c 128.872 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C7 H10 O5' _chem_comp.formula_weight 174.151 _chem_comp.id SKM _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SHIKIMATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C8 SKM sing 419 n n O12 H12 SKM sing 420 n n C8 C6 SKM sing 421 n n C8 C9 SKM sing 422 n n C8 H8 SKM sing 423 n n C6 O7 SKM sing 424 n n C6 C5 SKM sing 425 n n C6 H6 SKM sing 426 n n O7 HO7 SKM sing 427 n n C5 C4 SKM sing 428 n n C5 H51 SKM sing 429 n n C5 H52 SKM sing 430 n n C4 C1 SKM sing 431 n n C4 C10 SKM doub 432 n n C1 O2 SKM sing 433 n n C1 O3 SKM doub 434 n n O2 HO2 SKM sing 435 n n C10 C9 SKM sing 436 n n C10 H10 SKM sing 437 n n C9 O11 SKM sing 438 n n C9 H9 SKM sing 439 n n O11 H11 SKM sing 440 n n # _atom_sites.entry_id 2HK9 _atom_sites.fract_transf_matrix[1][1] 0.013889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATR A 1 1101 1101 ATR ATR . F 3 SKM A 1 1102 1102 SKM SKM . G 4 NAP B 1 1201 1201 NAP NAP . H 3 SKM B 1 1202 1202 SKM SKM . I 4 NAP C 1 1301 1301 NAP NAP . J 3 SKM C 1 1302 1302 SKM SKM . K 4 NAP D 1 1401 1401 NAP NAP . L 3 SKM D 1 1402 1402 SKM SKM . M 5 HOH A 1 1103 1 HOH HOH . M 5 HOH A 2 1104 2 HOH HOH . M 5 HOH A 3 1105 3 HOH HOH . M 5 HOH A 4 1106 5 HOH HOH . M 5 HOH A 5 1107 9 HOH HOH . M 5 HOH A 6 1108 10 HOH HOH . M 5 HOH A 7 1109 11 HOH HOH . M 5 HOH A 8 1110 12 HOH HOH . M 5 HOH A 9 1111 13 HOH HOH . M 5 HOH A 10 1112 15 HOH HOH . M 5 HOH A 11 1113 16 HOH HOH . M 5 HOH A 12 1114 17 HOH HOH . M 5 HOH A 13 1115 18 HOH HOH . M 5 HOH A 14 1116 19 HOH HOH . M 5 HOH A 15 1117 20 HOH HOH . M 5 HOH A 16 1118 21 HOH HOH . M 5 HOH A 17 1119 22 HOH HOH . M 5 HOH A 18 1120 23 HOH HOH . M 5 HOH A 19 1121 24 HOH HOH . M 5 HOH A 20 1122 25 HOH HOH . M 5 HOH A 21 1123 26 HOH HOH . M 5 HOH A 22 1124 35 HOH HOH . M 5 HOH A 23 1125 42 HOH HOH . M 5 HOH A 24 1126 47 HOH HOH . M 5 HOH A 25 1127 50 HOH HOH . M 5 HOH A 26 1128 53 HOH HOH . M 5 HOH A 27 1129 54 HOH HOH . M 5 HOH A 28 1130 61 HOH HOH . M 5 HOH A 29 1131 62 HOH HOH . M 5 HOH A 30 1132 63 HOH HOH . M 5 HOH A 31 1133 64 HOH HOH . M 5 HOH A 32 1134 66 HOH HOH . M 5 HOH A 33 1135 101 HOH HOH . M 5 HOH A 34 1136 102 HOH HOH . M 5 HOH A 35 1137 103 HOH HOH . M 5 HOH A 36 1138 104 HOH HOH . M 5 HOH A 37 1139 105 HOH HOH . M 5 HOH A 38 1140 110 HOH HOH . M 5 HOH A 39 1141 137 HOH HOH . M 5 HOH A 40 1142 138 HOH HOH . M 5 HOH A 41 1143 139 HOH HOH . M 5 HOH A 42 1144 140 HOH HOH . M 5 HOH A 43 1145 141 HOH HOH . M 5 HOH A 44 1146 142 HOH HOH . M 5 HOH A 45 1147 168 HOH HOH . M 5 HOH A 46 1148 169 HOH HOH . M 5 HOH A 47 1149 170 HOH HOH . M 5 HOH A 48 1150 171 HOH HOH . M 5 HOH A 49 1151 172 HOH HOH . M 5 HOH A 50 1152 173 HOH HOH . M 5 HOH A 51 1153 176 HOH HOH . M 5 HOH A 52 1154 177 HOH HOH . M 5 HOH A 53 1155 184 HOH HOH . M 5 HOH A 54 1156 199 HOH HOH . M 5 HOH A 55 1157 200 HOH HOH . M 5 HOH A 56 1158 201 HOH HOH . N 5 HOH B 1 1203 6 HOH HOH . N 5 HOH B 2 1204 7 HOH HOH . N 5 HOH B 3 1205 8 HOH HOH . N 5 HOH B 4 1206 29 HOH HOH . N 5 HOH B 5 1207 31 HOH HOH . N 5 HOH B 6 1208 40 HOH HOH . N 5 HOH B 7 1209 58 HOH HOH . N 5 HOH B 8 1210 60 HOH HOH . N 5 HOH B 9 1211 65 HOH HOH . N 5 HOH B 10 1212 67 HOH HOH . N 5 HOH B 11 1213 68 HOH HOH . N 5 HOH B 12 1214 69 HOH HOH . N 5 HOH B 13 1215 70 HOH HOH . N 5 HOH B 14 1216 71 HOH HOH . N 5 HOH B 15 1217 72 HOH HOH . N 5 HOH B 16 1218 73 HOH HOH . N 5 HOH B 17 1219 74 HOH HOH . N 5 HOH B 18 1220 75 HOH HOH . N 5 HOH B 19 1221 76 HOH HOH . N 5 HOH B 20 1222 77 HOH HOH . N 5 HOH B 21 1223 78 HOH HOH . N 5 HOH B 22 1224 106 HOH HOH . N 5 HOH B 23 1225 107 HOH HOH . N 5 HOH B 24 1226 108 HOH HOH . N 5 HOH B 25 1227 109 HOH HOH . N 5 HOH B 26 1228 111 HOH HOH . N 5 HOH B 27 1229 112 HOH HOH . N 5 HOH B 28 1230 113 HOH HOH . N 5 HOH B 29 1231 119 HOH HOH . N 5 HOH B 30 1232 136 HOH HOH . N 5 HOH B 31 1233 143 HOH HOH . N 5 HOH B 32 1234 144 HOH HOH . N 5 HOH B 33 1235 146 HOH HOH . N 5 HOH B 34 1236 147 HOH HOH . N 5 HOH B 35 1237 148 HOH HOH . N 5 HOH B 36 1238 155 HOH HOH . N 5 HOH B 37 1239 167 HOH HOH . N 5 HOH B 38 1240 174 HOH HOH . N 5 HOH B 39 1241 178 HOH HOH . N 5 HOH B 40 1242 179 HOH HOH . N 5 HOH B 41 1243 185 HOH HOH . N 5 HOH B 42 1244 186 HOH HOH . N 5 HOH B 43 1245 187 HOH HOH . N 5 HOH B 44 1246 188 HOH HOH . N 5 HOH B 45 1247 189 HOH HOH . N 5 HOH B 46 1248 190 HOH HOH . O 5 HOH C 1 1303 4 HOH HOH . O 5 HOH C 2 1304 14 HOH HOH . O 5 HOH C 3 1305 28 HOH HOH . O 5 HOH C 4 1306 32 HOH HOH . O 5 HOH C 5 1307 34 HOH HOH . O 5 HOH C 6 1308 36 HOH HOH . O 5 HOH C 7 1309 38 HOH HOH . O 5 HOH C 8 1310 39 HOH HOH . O 5 HOH C 9 1311 41 HOH HOH . O 5 HOH C 10 1312 45 HOH HOH . O 5 HOH C 11 1313 46 HOH HOH . O 5 HOH C 12 1314 49 HOH HOH . O 5 HOH C 13 1315 51 HOH HOH . O 5 HOH C 14 1316 52 HOH HOH . O 5 HOH C 15 1317 59 HOH HOH . O 5 HOH C 16 1318 79 HOH HOH . O 5 HOH C 17 1319 80 HOH HOH . O 5 HOH C 18 1320 82 HOH HOH . O 5 HOH C 19 1321 83 HOH HOH . O 5 HOH C 20 1322 84 HOH HOH . O 5 HOH C 21 1323 85 HOH HOH . O 5 HOH C 22 1324 86 HOH HOH . O 5 HOH C 23 1325 87 HOH HOH . O 5 HOH C 24 1326 88 HOH HOH . O 5 HOH C 25 1327 115 HOH HOH . O 5 HOH C 26 1328 116 HOH HOH . O 5 HOH C 27 1329 117 HOH HOH . O 5 HOH C 28 1330 118 HOH HOH . O 5 HOH C 29 1331 120 HOH HOH . O 5 HOH C 30 1332 121 HOH HOH . O 5 HOH C 31 1333 122 HOH HOH . O 5 HOH C 32 1334 123 HOH HOH . O 5 HOH C 33 1335 124 HOH HOH . O 5 HOH C 34 1336 125 HOH HOH . O 5 HOH C 35 1337 126 HOH HOH . O 5 HOH C 36 1338 127 HOH HOH . O 5 HOH C 37 1339 145 HOH HOH . O 5 HOH C 38 1340 149 HOH HOH . O 5 HOH C 39 1341 150 HOH HOH . O 5 HOH C 40 1342 151 HOH HOH . O 5 HOH C 41 1343 152 HOH HOH . O 5 HOH C 42 1344 153 HOH HOH . O 5 HOH C 43 1345 154 HOH HOH . O 5 HOH C 44 1346 156 HOH HOH . O 5 HOH C 45 1347 157 HOH HOH . O 5 HOH C 46 1348 166 HOH HOH . O 5 HOH C 47 1349 175 HOH HOH . O 5 HOH C 48 1350 180 HOH HOH . O 5 HOH C 49 1351 181 HOH HOH . O 5 HOH C 50 1352 191 HOH HOH . O 5 HOH C 51 1353 192 HOH HOH . O 5 HOH C 52 1354 193 HOH HOH . O 5 HOH C 53 1355 194 HOH HOH . O 5 HOH C 54 1356 195 HOH HOH . O 5 HOH C 55 1357 196 HOH HOH . O 5 HOH C 56 1358 197 HOH HOH . P 5 HOH D 1 1403 27 HOH HOH . P 5 HOH D 2 1404 30 HOH HOH . P 5 HOH D 3 1405 33 HOH HOH . P 5 HOH D 4 1406 37 HOH HOH . P 5 HOH D 5 1407 43 HOH HOH . P 5 HOH D 6 1408 44 HOH HOH . P 5 HOH D 7 1409 48 HOH HOH . P 5 HOH D 8 1410 55 HOH HOH . P 5 HOH D 9 1411 56 HOH HOH . P 5 HOH D 10 1412 57 HOH HOH . P 5 HOH D 11 1413 81 HOH HOH . P 5 HOH D 12 1414 89 HOH HOH . P 5 HOH D 13 1415 90 HOH HOH . P 5 HOH D 14 1416 91 HOH HOH . P 5 HOH D 15 1417 92 HOH HOH . P 5 HOH D 16 1418 93 HOH HOH . P 5 HOH D 17 1419 94 HOH HOH . P 5 HOH D 18 1420 95 HOH HOH . P 5 HOH D 19 1421 96 HOH HOH . P 5 HOH D 20 1422 97 HOH HOH . P 5 HOH D 21 1423 98 HOH HOH . P 5 HOH D 22 1424 99 HOH HOH . P 5 HOH D 23 1425 100 HOH HOH . P 5 HOH D 24 1426 114 HOH HOH . P 5 HOH D 25 1427 128 HOH HOH . P 5 HOH D 26 1428 129 HOH HOH . P 5 HOH D 27 1429 130 HOH HOH . P 5 HOH D 28 1430 131 HOH HOH . P 5 HOH D 29 1431 132 HOH HOH . P 5 HOH D 30 1432 133 HOH HOH . P 5 HOH D 31 1433 134 HOH HOH . P 5 HOH D 32 1434 135 HOH HOH . P 5 HOH D 33 1435 158 HOH HOH . P 5 HOH D 34 1436 159 HOH HOH . P 5 HOH D 35 1437 160 HOH HOH . P 5 HOH D 36 1438 161 HOH HOH . P 5 HOH D 37 1439 162 HOH HOH . P 5 HOH D 38 1440 163 HOH HOH . P 5 HOH D 39 1441 164 HOH HOH . P 5 HOH D 40 1442 165 HOH HOH . P 5 HOH D 41 1443 182 HOH HOH . P 5 HOH D 42 1444 183 HOH HOH . P 5 HOH D 43 1445 198 HOH HOH . P 5 HOH D 44 1446 202 HOH HOH . P 5 HOH D 45 1447 203 HOH HOH . P 5 HOH D 46 1448 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 SKM . . . L 3 6.392 65.086 62.699 1 35.49 ? O12 SKM 1402 D 1 HETATM 2 C C8 SKM . . . L 3 7.012 64.483 61.537 1 38.78 ? C8 SKM 1402 D 1 HETATM 3 C C6 SKM . . . L 3 7.208 65.53 60.478 1 35.89 ? C6 SKM 1402 D 1 HETATM 4 O O7 SKM . . . L 3 5.916 66.129 60.061 1 45.86 ? O7 SKM 1402 D 1 HETATM 5 C C5 SKM . . . L 3 7.837 64.834 59.259 1 33.74 ? C5 SKM 1402 D 1 HETATM 6 C C4 SKM . . . L 3 9.1 64.136 59.516 1 37.6 ? C4 SKM 1402 D 1 HETATM 7 C C1 SKM . . . L 3 10.084 63.98 58.458 1 43.38 ? C1 SKM 1402 D 1 HETATM 8 O O2 SKM . . . L 3 11.182 63.306 58.7 1 45.67 ? O2 SKM 1402 D 1 HETATM 9 O O3 SKM . . . L 3 9.748 64.548 57.338 1 40.94 ? O3 SKM 1402 D 1 HETATM 10 C C10 SKM . . . L 3 9.406 63.697 60.819 1 44.12 ? C10 SKM 1402 D 1 HETATM 11 C C9 SKM . . . L 3 8.389 63.934 61.959 1 39.57 ? C9 SKM 1402 D 1 HETATM 12 O O11 SKM . . . L 3 8.953 64.918 62.865 1 50.25 ? O11 SKM 1402 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #