data_2HKH
#
_model_server_result.job_id            zYKFvxvN9e_icIK-cbxq5w 
_model_server_result.datetime_utc      '2025-02-17 06:34:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hkh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":219}' 
#
_entry.id    2HKH 
#
_exptl.entry_id    2HKH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.3 
_cell.angle_beta          88.45 
_cell.angle_gamma         84.29 
_cell.entry_id            2HKH 
_cell.length_a            40.982 
_cell.length_b            43.154 
_cell.length_c            57.37 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HKH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 219 L CYS 219 1_555 B SG CYS 134 H CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 146 H CYS 146 1_555 B SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2HKH 
_atom_sites.fract_transf_matrix[1][1]    0.024401 
_atom_sites.fract_transf_matrix[1][2]    -0.002439 
_atom_sites.fract_transf_matrix[1][3]    -0.000468 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023288 
_atom_sites.fract_transf_matrix[2][3]    -0.001861 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017493 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL H 1 219 101 GOL GOL . 
D 4 HOH L 1 220 1 HOH HOH . 
D 4 HOH L 2 221 3 HOH HOH . 
D 4 HOH L 3 222 4 HOH HOH . 
D 4 HOH L 4 223 11 HOH HOH . 
D 4 HOH L 5 224 12 HOH HOH . 
D 4 HOH L 6 225 13 HOH HOH . 
D 4 HOH L 7 226 15 HOH HOH . 
D 4 HOH L 8 227 16 HOH HOH . 
D 4 HOH L 9 228 20 HOH HOH . 
D 4 HOH L 10 229 21 HOH HOH . 
D 4 HOH L 11 230 22 HOH HOH . 
D 4 HOH L 12 231 24 HOH HOH . 
D 4 HOH L 13 232 25 HOH HOH . 
D 4 HOH L 14 233 26 HOH HOH . 
D 4 HOH L 15 234 27 HOH HOH . 
D 4 HOH L 16 235 28 HOH HOH . 
D 4 HOH L 17 236 29 HOH HOH . 
D 4 HOH L 18 237 31 HOH HOH . 
D 4 HOH L 19 238 32 HOH HOH . 
D 4 HOH L 20 239 33 HOH HOH . 
D 4 HOH L 21 240 34 HOH HOH . 
D 4 HOH L 22 241 35 HOH HOH . 
D 4 HOH L 23 242 37 HOH HOH . 
D 4 HOH L 24 243 38 HOH HOH . 
D 4 HOH L 25 244 39 HOH HOH . 
D 4 HOH L 26 245 40 HOH HOH . 
D 4 HOH L 27 246 42 HOH HOH . 
D 4 HOH L 28 247 45 HOH HOH . 
D 4 HOH L 29 248 46 HOH HOH . 
D 4 HOH L 30 249 47 HOH HOH . 
D 4 HOH L 31 250 50 HOH HOH . 
D 4 HOH L 32 251 51 HOH HOH . 
D 4 HOH L 33 252 52 HOH HOH . 
D 4 HOH L 34 253 54 HOH HOH . 
D 4 HOH L 35 254 55 HOH HOH . 
D 4 HOH L 36 255 56 HOH HOH . 
D 4 HOH L 37 256 57 HOH HOH . 
D 4 HOH L 38 257 59 HOH HOH . 
D 4 HOH L 39 258 60 HOH HOH . 
D 4 HOH L 40 259 62 HOH HOH . 
D 4 HOH L 41 260 63 HOH HOH . 
D 4 HOH L 42 261 64 HOH HOH . 
D 4 HOH L 43 262 65 HOH HOH . 
D 4 HOH L 44 263 67 HOH HOH . 
D 4 HOH L 45 264 68 HOH HOH . 
D 4 HOH L 46 265 70 HOH HOH . 
D 4 HOH L 47 266 71 HOH HOH . 
D 4 HOH L 48 267 76 HOH HOH . 
D 4 HOH L 49 268 78 HOH HOH . 
D 4 HOH L 50 269 79 HOH HOH . 
D 4 HOH L 51 270 82 HOH HOH . 
D 4 HOH L 52 271 83 HOH HOH . 
D 4 HOH L 53 272 85 HOH HOH . 
D 4 HOH L 54 273 86 HOH HOH . 
D 4 HOH L 55 274 87 HOH HOH . 
D 4 HOH L 56 275 88 HOH HOH . 
D 4 HOH L 57 276 90 HOH HOH . 
D 4 HOH L 58 277 91 HOH HOH . 
D 4 HOH L 59 278 93 HOH HOH . 
D 4 HOH L 60 279 94 HOH HOH . 
D 4 HOH L 61 280 96 HOH HOH . 
D 4 HOH L 62 281 98 HOH HOH . 
E 4 HOH H 1 220 2 HOH HOH . 
E 4 HOH H 2 221 5 HOH HOH . 
E 4 HOH H 3 222 6 HOH HOH . 
E 4 HOH H 4 223 7 HOH HOH . 
E 4 HOH H 5 224 8 HOH HOH . 
E 4 HOH H 6 225 9 HOH HOH . 
E 4 HOH H 7 226 10 HOH HOH . 
E 4 HOH H 8 227 14 HOH HOH . 
E 4 HOH H 9 228 17 HOH HOH . 
E 4 HOH H 10 229 19 HOH HOH . 
E 4 HOH H 11 230 23 HOH HOH . 
E 4 HOH H 12 231 30 HOH HOH . 
E 4 HOH H 13 232 36 HOH HOH . 
E 4 HOH H 14 233 41 HOH HOH . 
E 4 HOH H 15 234 43 HOH HOH . 
E 4 HOH H 16 235 48 HOH HOH . 
E 4 HOH H 17 236 49 HOH HOH . 
E 4 HOH H 18 237 53 HOH HOH . 
E 4 HOH H 19 238 58 HOH HOH . 
E 4 HOH H 20 239 61 HOH HOH . 
E 4 HOH H 21 240 66 HOH HOH . 
E 4 HOH H 22 241 69 HOH HOH . 
E 4 HOH H 23 242 72 HOH HOH . 
E 4 HOH H 24 243 73 HOH HOH . 
E 4 HOH H 25 244 74 HOH HOH . 
E 4 HOH H 26 245 75 HOH HOH . 
E 4 HOH H 27 246 77 HOH HOH . 
E 4 HOH H 28 247 80 HOH HOH . 
E 4 HOH H 29 248 81 HOH HOH . 
E 4 HOH H 30 249 84 HOH HOH . 
E 4 HOH H 31 250 89 HOH HOH . 
E 4 HOH H 32 251 92 HOH HOH . 
E 4 HOH H 33 252 95 HOH HOH . 
E 4 HOH H 34 253 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -2.109 14.537 23.71 1 41.81 ? C1 GOL 219 H 1 
HETATM 2 O O1 GOL . . . C 3 -1.056 15.046 22.914 1 43.19 ? O1 GOL 219 H 1 
HETATM 3 C C2 GOL . . . C 3 -3.097 15.655 23.989 1 41.81 ? C2 GOL 219 H 1 
HETATM 4 O O2 GOL . . . C 3 -2.419 16.793 24.486 1 43.16 ? O2 GOL 219 H 1 
HETATM 5 C C3 GOL . . . C 3 -4.225 15.214 24.915 1 39.82 ? C3 GOL 219 H 1 
HETATM 6 O O3 GOL . . . C 3 -3.741 14.997 26.223 1 37.04 ? O3 GOL 219 H 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#