data_2HKO # _model_server_result.job_id m_zBi823UNS-rAxMMjYxXQ _model_server_result.datetime_utc '2024-10-22 21:49:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2762}' # _entry.id 2HKO # _exptl.entry_id 2HKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HKO _cell.length_a 187.113 _cell.length_b 187.113 _cell.length_c 106.581 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 2HKO _atom_sites.fract_transf_matrix[1][1] 0.005344 _atom_sites.fract_transf_matrix[1][2] 0.003085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 2762 2762 FAD FAD . C 3 HOH A 1 2763 1 HOH TIP . C 3 HOH A 2 2764 2 HOH TIP . C 3 HOH A 3 2765 5 HOH TIP . C 3 HOH A 4 2766 6 HOH TIP . C 3 HOH A 5 2767 10 HOH TIP . C 3 HOH A 6 2768 12 HOH TIP . C 3 HOH A 7 2769 13 HOH TIP . C 3 HOH A 8 2770 14 HOH TIP . C 3 HOH A 9 2771 17 HOH TIP . C 3 HOH A 10 2772 21 HOH TIP . C 3 HOH A 11 2773 24 HOH TIP . C 3 HOH A 12 2774 26 HOH TIP . C 3 HOH A 13 2775 27 HOH TIP . C 3 HOH A 14 2776 28 HOH TIP . C 3 HOH A 15 2777 30 HOH TIP . C 3 HOH A 16 2778 37 HOH TIP . C 3 HOH A 17 2779 38 HOH TIP . C 3 HOH A 18 2780 43 HOH TIP . C 3 HOH A 19 2781 56 HOH TIP . C 3 HOH A 20 2782 59 HOH TIP . C 3 HOH A 21 2783 60 HOH TIP . C 3 HOH A 22 2784 64 HOH TIP . C 3 HOH A 23 2785 69 HOH TIP . C 3 HOH A 24 2786 76 HOH TIP . C 3 HOH A 25 2787 77 HOH TIP . C 3 HOH A 26 2788 79 HOH TIP . C 3 HOH A 27 2789 80 HOH TIP . C 3 HOH A 28 2790 82 HOH TIP . C 3 HOH A 29 2791 83 HOH TIP . C 3 HOH A 30 2792 84 HOH TIP . C 3 HOH A 31 2793 86 HOH TIP . C 3 HOH A 32 2794 87 HOH TIP . C 3 HOH A 33 2795 88 HOH TIP . C 3 HOH A 34 2796 89 HOH TIP . C 3 HOH A 35 2797 90 HOH TIP . C 3 HOH A 36 2798 94 HOH TIP . C 3 HOH A 37 2799 95 HOH TIP . C 3 HOH A 38 2800 96 HOH TIP . C 3 HOH A 39 2801 97 HOH TIP . C 3 HOH A 40 2802 98 HOH TIP . C 3 HOH A 41 2803 99 HOH TIP . C 3 HOH A 42 2804 102 HOH TIP . C 3 HOH A 43 2805 103 HOH TIP . C 3 HOH A 44 2806 104 HOH TIP . C 3 HOH A 45 2807 105 HOH TIP . C 3 HOH A 46 2808 106 HOH TIP . C 3 HOH A 47 2809 109 HOH TIP . C 3 HOH A 48 2810 110 HOH TIP . C 3 HOH A 49 2811 112 HOH TIP . C 3 HOH A 50 2812 116 HOH TIP . C 3 HOH A 51 2813 117 HOH TIP . C 3 HOH A 52 2814 123 HOH TIP . C 3 HOH A 53 2815 128 HOH TIP . C 3 HOH A 54 2816 129 HOH TIP . C 3 HOH A 55 2817 131 HOH TIP . C 3 HOH A 56 2818 132 HOH TIP . C 3 HOH A 57 2819 133 HOH TIP . C 3 HOH A 58 2820 134 HOH TIP . C 3 HOH A 59 2821 138 HOH TIP . C 3 HOH A 60 2822 140 HOH TIP . C 3 HOH A 61 2823 144 HOH TIP . C 3 HOH A 62 2824 145 HOH TIP . C 3 HOH A 63 2825 147 HOH TIP . C 3 HOH A 64 2826 148 HOH TIP . C 3 HOH A 65 2827 149 HOH TIP . C 3 HOH A 66 2828 150 HOH TIP . C 3 HOH A 67 2829 151 HOH TIP . C 3 HOH A 68 2830 152 HOH TIP . C 3 HOH A 69 2831 154 HOH TIP . C 3 HOH A 70 2832 155 HOH TIP . C 3 HOH A 71 2833 158 HOH TIP . C 3 HOH A 72 2834 160 HOH TIP . C 3 HOH A 73 2835 161 HOH TIP . C 3 HOH A 74 2836 162 HOH TIP . C 3 HOH A 75 2837 164 HOH TIP . C 3 HOH A 76 2838 165 HOH TIP . C 3 HOH A 77 2839 167 HOH TIP . C 3 HOH A 78 2840 168 HOH TIP . C 3 HOH A 79 2841 169 HOH TIP . C 3 HOH A 80 2842 170 HOH TIP . C 3 HOH A 81 2843 171 HOH TIP . C 3 HOH A 82 2844 172 HOH TIP . C 3 HOH A 83 2845 173 HOH TIP . C 3 HOH A 84 2846 174 HOH TIP . C 3 HOH A 85 2847 175 HOH TIP . C 3 HOH A 86 2848 176 HOH TIP . C 3 HOH A 87 2849 177 HOH TIP . C 3 HOH A 88 2850 178 HOH TIP . C 3 HOH A 89 2851 179 HOH TIP . C 3 HOH A 90 2852 180 HOH TIP . C 3 HOH A 91 2853 181 HOH TIP . C 3 HOH A 92 2854 182 HOH TIP . C 3 HOH A 93 2855 183 HOH TIP . C 3 HOH A 94 2856 184 HOH TIP . C 3 HOH A 95 2857 185 HOH TIP . C 3 HOH A 96 2858 186 HOH TIP . C 3 HOH A 97 2859 187 HOH TIP . C 3 HOH A 98 2860 188 HOH TIP . C 3 HOH A 99 2861 189 HOH TIP . C 3 HOH A 100 2862 190 HOH TIP . C 3 HOH A 101 2863 191 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 22.497 43.333 55.081 1 55.39 ? PA FAD 2762 A 1 HETATM 2 O O1A FAD . . . B 2 22.737 44.471 56.008 1 43.75 ? O1A FAD 2762 A 1 HETATM 3 O O2A FAD . . . B 2 23.606 42.715 54.304 1 47.07 ? O2A FAD 2762 A 1 HETATM 4 O O5B FAD . . . B 2 21.797 42.286 55.979 1 59.32 ? O5B FAD 2762 A 1 HETATM 5 C C5B FAD . . . B 2 21.364 40.979 55.596 1 68.86 ? C5B FAD 2762 A 1 HETATM 6 C C4B FAD . . . B 2 21.484 40.266 56.909 1 64.17 ? C4B FAD 2762 A 1 HETATM 7 O O4B FAD . . . B 2 21.186 38.859 56.812 1 53.33 ? O4B FAD 2762 A 1 HETATM 8 C C3B FAD . . . B 2 22.866 40.396 57.592 1 59.89 ? C3B FAD 2762 A 1 HETATM 9 O O3B FAD . . . B 2 22.834 40.796 58.945 1 69.46 ? O3B FAD 2762 A 1 HETATM 10 C C2B FAD . . . B 2 23.475 39.035 57.357 1 60.75 ? C2B FAD 2762 A 1 HETATM 11 O O2B FAD . . . B 2 24.56 38.681 58.19 1 46.08 ? O2B FAD 2762 A 1 HETATM 12 C C1B FAD . . . B 2 22.24 38.151 57.475 1 61.33 ? C1B FAD 2762 A 1 HETATM 13 N N9A FAD . . . B 2 22.307 36.805 56.911 1 56.99 ? N9A FAD 2762 A 1 HETATM 14 C C8A FAD . . . B 2 22.897 36.364 55.765 1 60.74 ? C8A FAD 2762 A 1 HETATM 15 N N7A FAD . . . B 2 22.77 35.065 55.57 1 66.5 ? N7A FAD 2762 A 1 HETATM 16 C C5A FAD . . . B 2 22.037 34.638 56.662 1 62.22 ? C5A FAD 2762 A 1 HETATM 17 C C6A FAD . . . B 2 21.583 33.333 57.066 1 60.5 ? C6A FAD 2762 A 1 HETATM 18 N N6A FAD . . . B 2 21.811 32.253 56.324 1 52.84 ? N6A FAD 2762 A 1 HETATM 19 N N1A FAD . . . B 2 20.871 33.228 58.231 1 63.09 ? N1A FAD 2762 A 1 HETATM 20 C C2A FAD . . . B 2 20.651 34.353 58.974 1 59.02 ? C2A FAD 2762 A 1 HETATM 21 N N3A FAD . . . B 2 21.039 35.615 58.693 1 62.26 ? N3A FAD 2762 A 1 HETATM 22 C C4A FAD . . . B 2 21.77 35.667 57.491 1 64.61 ? C4A FAD 2762 A 1 HETATM 23 N N1 FAD . . . B 2 25.345 52.032 51.475 1 67.51 ? N1 FAD 2762 A 1 HETATM 24 C C2 FAD . . . B 2 25.092 53.374 51.529 1 65.66 ? C2 FAD 2762 A 1 HETATM 25 O O2 FAD . . . B 2 23.928 53.846 51.462 1 67.7 ? O2 FAD 2762 A 1 HETATM 26 N N3 FAD . . . B 2 26.163 54.273 51.698 1 55.17 ? N3 FAD 2762 A 1 HETATM 27 C C4 FAD . . . B 2 27.515 53.904 51.783 1 61.73 ? C4 FAD 2762 A 1 HETATM 28 O O4 FAD . . . B 2 28.398 54.779 51.943 1 60.19 ? O4 FAD 2762 A 1 HETATM 29 C C4X FAD . . . B 2 27.77 52.516 51.7 1 65.72 ? C4X FAD 2762 A 1 HETATM 30 N N5 FAD . . . B 2 29.114 52.055 51.791 1 71.85 ? N5 FAD 2762 A 1 HETATM 31 C C5X FAD . . . B 2 29.338 50.672 51.774 1 63.88 ? C5X FAD 2762 A 1 HETATM 32 C C6 FAD . . . B 2 30.678 50.168 51.9 1 68.01 ? C6 FAD 2762 A 1 HETATM 33 C C7 FAD . . . B 2 30.947 48.808 51.926 1 62.35 ? C7 FAD 2762 A 1 HETATM 34 C C7M FAD . . . B 2 32.404 48.369 52.072 1 76.77 ? C7M FAD 2762 A 1 HETATM 35 C C8 FAD . . . B 2 29.887 47.872 51.826 1 62.71 ? C8 FAD 2762 A 1 HETATM 36 C C8M FAD . . . B 2 30.092 46.375 51.86 1 74.77 ? C8M FAD 2762 A 1 HETATM 37 C C9 FAD . . . B 2 28.545 48.358 51.69 1 54.03 ? C9 FAD 2762 A 1 HETATM 38 C C9A FAD . . . B 2 28.247 49.73 51.654 1 60.9 ? C9A FAD 2762 A 1 HETATM 39 N N10 FAD . . . B 2 26.888 50.237 51.538 1 61.24 ? N10 FAD 2762 A 1 HETATM 40 C C10 FAD . . . B 2 26.656 51.609 51.561 1 64.04 ? C10 FAD 2762 A 1 HETATM 41 C C1' FAD . . . B 2 25.771 49.287 51.406 1 48.7 ? C1' FAD 2762 A 1 HETATM 42 C C2' FAD . . . B 2 24.877 49.139 52.633 1 66.48 ? C2' FAD 2762 A 1 HETATM 43 O O2' FAD . . . B 2 25.691 48.839 53.78 1 66.56 ? O2' FAD 2762 A 1 HETATM 44 C C3' FAD . . . B 2 23.872 48.056 52.295 1 60.78 ? C3' FAD 2762 A 1 HETATM 45 O O3' FAD . . . B 2 23.126 48.458 51.145 1 53.18 ? O3' FAD 2762 A 1 HETATM 46 C C4' FAD . . . B 2 22.869 47.74 53.419 1 54.13 ? C4' FAD 2762 A 1 HETATM 47 O O4' FAD . . . B 2 23.567 47.364 54.606 1 69 ? O4' FAD 2762 A 1 HETATM 48 C C5' FAD . . . B 2 21.991 46.612 52.932 1 50.4 ? C5' FAD 2762 A 1 HETATM 49 O O5' FAD . . . B 2 21.044 46.263 53.915 1 60.3 ? O5' FAD 2762 A 1 HETATM 50 P P FAD . . . B 2 20.277 44.882 53.846 1 52.49 ? P FAD 2762 A 1 HETATM 51 O O1P FAD . . . B 2 19.344 44.874 54.982 1 47.07 ? O1P FAD 2762 A 1 HETATM 52 O O2P FAD . . . B 2 19.723 44.739 52.457 1 52.71 ? O2P FAD 2762 A 1 HETATM 53 O O3P FAD . . . B 2 21.306 43.677 54.08 1 38.6 ? O3P FAD 2762 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #