data_2HL2
#
_model_server_result.job_id            b3ERA2FT_XTnQPPt_ONoZw 
_model_server_result.datetime_utc      '2024-10-28 17:17:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hl2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    2HL2 
#
_exptl.entry_id    2HL2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              433.397 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HL2 
_cell.length_a            39.652 
_cell.length_b            67.363 
_cell.length_c            98.588 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HL2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H19 N7 O8 S' 
_chem_comp.formula_weight    433.397 
_chem_comp.id                SSA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N10 CA SSA sing 290 n n 
N10 HN11 SSA sing 291 n n 
N10 HN12 SSA sing 292 n n 
CA CB SSA sing 293 n n 
CA C9 SSA sing 294 n n 
CA HA SSA sing 295 n n 
CB OG SSA sing 296 n n 
CB HB1 SSA sing 297 n n 
CB HB2 SSA sing 298 n n 
OG HOG SSA sing 299 n n 
C9 O9 SSA doub 300 n n 
C9 N8 SSA sing 301 n n 
N8 S1 SSA sing 302 n n 
N8 HN8 SSA sing 303 n n 
S1 O1S SSA doub 304 n n 
S1 O2S SSA doub 305 n n 
S1 O5' SSA sing 306 n n 
O5' C5' SSA sing 307 n n 
C5' C4' SSA sing 308 n n 
C5' "H5'1" SSA sing 309 n n 
C5' "H5'2" SSA sing 310 n n 
C4' O4' SSA sing 311 n n 
C4' C3' SSA sing 312 n n 
C4' H4' SSA sing 313 n n 
O4' C1' SSA sing 314 n n 
C3' O3' SSA sing 315 n n 
C3' C2' SSA sing 316 n n 
C3' H3' SSA sing 317 n n 
O3' HO3' SSA sing 318 n n 
C2' O2' SSA sing 319 n n 
C2' C1' SSA sing 320 n n 
C2' H2' SSA sing 321 n n 
O2' HO2' SSA sing 322 n n 
C1' N9 SSA sing 323 n n 
C1' H1' SSA sing 324 n n 
N9 C8 SSA sing 325 n y 
N9 C4 SSA sing 326 n y 
C8 N7 SSA doub 327 n y 
C8 H8 SSA sing 328 n n 
N7 C5 SSA sing 329 n y 
C5 C6 SSA sing 330 n y 
C5 C4 SSA doub 331 n y 
C6 N6 SSA sing 332 n n 
C6 N1 SSA doub 333 n y 
N6 HN61 SSA sing 334 n n 
N6 HN62 SSA sing 335 n n 
N1 C2 SSA sing 336 n y 
C2 N3 SSA doub 337 n y 
C2 H2 SSA sing 338 n n 
N3 C4 SSA sing 339 n y 
#
_atom_sites.entry_id                     2HL2 
_atom_sites.fract_transf_matrix[1][1]    0.025219 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010143 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SSA A 1 500 500 SSA SSA . 
D 2 SSA B 1 501 501 SSA SSA . 
E 3 HOH A 1 1001 1001 HOH HOH . 
E 3 HOH A 2 1002 1002 HOH HOH . 
E 3 HOH A 3 1003 1003 HOH HOH . 
E 3 HOH A 4 1005 1005 HOH HOH . 
E 3 HOH A 5 1007 1007 HOH HOH . 
E 3 HOH A 6 1010 1010 HOH HOH . 
E 3 HOH A 7 1014 1014 HOH HOH . 
E 3 HOH A 8 1015 1015 HOH HOH . 
E 3 HOH A 9 1019 1019 HOH HOH . 
E 3 HOH A 10 1020 1020 HOH HOH . 
E 3 HOH A 11 1021 1021 HOH HOH . 
E 3 HOH A 12 1022 1022 HOH HOH . 
E 3 HOH A 13 1023 1023 HOH HOH . 
E 3 HOH A 14 1024 1024 HOH HOH . 
E 3 HOH A 15 1027 1027 HOH HOH . 
E 3 HOH A 16 1028 1028 HOH HOH . 
E 3 HOH A 17 1029 1029 HOH HOH . 
E 3 HOH A 18 1030 1030 HOH HOH . 
E 3 HOH A 19 1031 1031 HOH HOH . 
E 3 HOH A 20 1032 1032 HOH HOH . 
E 3 HOH A 21 1033 1033 HOH HOH . 
E 3 HOH A 22 1034 1034 HOH HOH . 
E 3 HOH A 23 1038 1038 HOH HOH . 
E 3 HOH A 24 1039 1039 HOH HOH . 
E 3 HOH A 25 1041 1041 HOH HOH . 
E 3 HOH A 26 1042 1042 HOH HOH . 
E 3 HOH A 27 1043 1043 HOH HOH . 
E 3 HOH A 28 1044 1044 HOH HOH . 
E 3 HOH A 29 1046 1046 HOH HOH . 
E 3 HOH A 30 1047 1047 HOH HOH . 
E 3 HOH A 31 1050 1050 HOH HOH . 
E 3 HOH A 32 1051 1051 HOH HOH . 
E 3 HOH A 33 1052 1052 HOH HOH . 
E 3 HOH A 34 1053 1053 HOH HOH . 
E 3 HOH A 35 1058 1058 HOH HOH . 
E 3 HOH A 36 1061 1061 HOH HOH . 
E 3 HOH A 37 1067 1067 HOH HOH . 
E 3 HOH A 38 1068 1068 HOH HOH . 
E 3 HOH A 39 1070 1070 HOH HOH . 
E 3 HOH A 40 1072 1072 HOH HOH . 
E 3 HOH A 41 1073 1073 HOH HOH . 
E 3 HOH A 42 1074 1074 HOH HOH . 
E 3 HOH A 43 1077 1077 HOH HOH . 
E 3 HOH A 44 1078 1078 HOH HOH . 
E 3 HOH A 45 1080 1080 HOH HOH . 
E 3 HOH A 46 1084 1084 HOH HOH . 
E 3 HOH A 47 1086 1086 HOH HOH . 
F 3 HOH B 1 1004 1004 HOH HOH . 
F 3 HOH B 2 1006 1006 HOH HOH . 
F 3 HOH B 3 1008 1008 HOH HOH . 
F 3 HOH B 4 1009 1009 HOH HOH . 
F 3 HOH B 5 1011 1011 HOH HOH . 
F 3 HOH B 6 1012 1012 HOH HOH . 
F 3 HOH B 7 1013 1013 HOH HOH . 
F 3 HOH B 8 1016 1016 HOH HOH . 
F 3 HOH B 9 1017 1017 HOH HOH . 
F 3 HOH B 10 1018 1018 HOH HOH . 
F 3 HOH B 11 1025 1025 HOH HOH . 
F 3 HOH B 12 1026 1026 HOH HOH . 
F 3 HOH B 13 1035 1035 HOH HOH . 
F 3 HOH B 14 1036 1036 HOH HOH . 
F 3 HOH B 15 1037 1037 HOH HOH . 
F 3 HOH B 16 1040 1040 HOH HOH . 
F 3 HOH B 17 1045 1045 HOH HOH . 
F 3 HOH B 18 1048 1048 HOH HOH . 
F 3 HOH B 19 1049 1049 HOH HOH . 
F 3 HOH B 20 1054 1054 HOH HOH . 
F 3 HOH B 21 1055 1055 HOH HOH . 
F 3 HOH B 22 1056 1056 HOH HOH . 
F 3 HOH B 23 1057 1057 HOH HOH . 
F 3 HOH B 24 1059 1059 HOH HOH . 
F 3 HOH B 25 1060 1060 HOH HOH . 
F 3 HOH B 26 1062 1062 HOH HOH . 
F 3 HOH B 27 1063 1063 HOH HOH . 
F 3 HOH B 28 1064 1064 HOH HOH . 
F 3 HOH B 29 1065 1065 HOH HOH . 
F 3 HOH B 30 1066 1066 HOH HOH . 
F 3 HOH B 31 1069 1069 HOH HOH . 
F 3 HOH B 32 1071 1071 HOH HOH . 
F 3 HOH B 33 1075 1075 HOH HOH . 
F 3 HOH B 34 1076 1076 HOH HOH . 
F 3 HOH B 35 1079 1079 HOH HOH . 
F 3 HOH B 36 1081 1081 HOH HOH . 
F 3 HOH B 37 1082 1082 HOH HOH . 
F 3 HOH B 38 1083 1083 HOH HOH . 
F 3 HOH B 39 1085 1085 HOH HOH . 
F 3 HOH B 40 1087 1087 HOH HOH . 
F 3 HOH B 41 1088 1088 HOH HOH . 
F 3 HOH B 42 1089 1089 HOH HOH . 
F 3 HOH B 43 1090 1090 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N10 SSA . . . C 2 33.476 1.583 -4.197 1 71.18 ? N10 SSA 500 A 1 
HETATM 2 C CA SSA . . . C 2 33.397 1.632 -2.73 1 69.35 ? CA SSA 500 A 1 
HETATM 3 C CB SSA . . . C 2 33.612 3.062 -2.229 1 69.95 ? CB SSA 500 A 1 
HETATM 4 O OG SSA . . . C 2 32.569 3.914 -2.71 1 68.55 ? OG SSA 500 A 1 
HETATM 5 C C9 SSA . . . C 2 32.031 1.124 -2.265 1 68.53 ? C9 SSA 500 A 1 
HETATM 6 O O9 SSA . . . C 2 31.948 0.373 -1.294 1 70.31 ? O9 SSA 500 A 1 
HETATM 7 N N8 SSA . . . C 2 30.996 1.527 -2.999 1 63.86 ? N8 SSA 500 A 1 
HETATM 8 S S1 SSA . . . C 2 29.475 1.076 -2.619 1 59.74 ? S1 SSA 500 A 1 
HETATM 9 O O1S SSA . . . C 2 29.114 1.615 -1.266 1 60.33 ? O1S SSA 500 A 1 
HETATM 10 O O2S SSA . . . C 2 29.41 -0.352 -2.584 1 58.63 ? O2S SSA 500 A 1 
HETATM 11 O O5' SSA . . . C 2 28.54 1.573 -3.583 1 57.71 ? O5' SSA 500 A 1 
HETATM 12 C C5' SSA . . . C 2 28.158 2.951 -3.645 1 51.73 ? C5' SSA 500 A 1 
HETATM 13 C C4' SSA . . . C 2 26.831 3.112 -4.391 1 48.48 ? C4' SSA 500 A 1 
HETATM 14 O O4' SSA . . . C 2 26.858 2.482 -5.685 1 46.24 ? O4' SSA 500 A 1 
HETATM 15 C C3' SSA . . . C 2 25.68 2.445 -3.635 1 47.91 ? C3' SSA 500 A 1 
HETATM 16 O O3' SSA . . . C 2 25.107 3.364 -2.7 1 48.34 ? O3' SSA 500 A 1 
HETATM 17 C C2' SSA . . . C 2 24.711 2.203 -4.791 1 44.98 ? C2' SSA 500 A 1 
HETATM 18 O O2' SSA . . . C 2 24.17 3.433 -5.281 1 44 ? O2' SSA 500 A 1 
HETATM 19 C C1' SSA . . . C 2 25.702 1.632 -5.806 1 44.3 ? C1' SSA 500 A 1 
HETATM 20 N N9 SSA . . . C 2 26.085 0.243 -5.457 1 43.18 ? N9 SSA 500 A 1 
HETATM 21 C C8 SSA . . . C 2 27.326 -0.242 -5.461 1 40.93 ? C8 SSA 500 A 1 
HETATM 22 N N7 SSA . . . C 2 27.304 -1.541 -5.172 1 40.84 ? N7 SSA 500 A 1 
HETATM 23 C C5 SSA . . . C 2 26.037 -1.894 -4.979 1 41.01 ? C5 SSA 500 A 1 
HETATM 24 C C6 SSA . . . C 2 25.392 -3.086 -4.668 1 39.16 ? C6 SSA 500 A 1 
HETATM 25 N N6 SSA . . . C 2 26.085 -4.211 -4.515 1 37.65 ? N6 SSA 500 A 1 
HETATM 26 N N1 SSA . . . C 2 24.057 -3.094 -4.544 1 38.38 ? N1 SSA 500 A 1 
HETATM 27 C C2 SSA . . . C 2 23.345 -1.992 -4.714 1 40.43 ? C2 SSA 500 A 1 
HETATM 28 N N3 SSA . . . C 2 23.928 -0.843 -5.013 1 42.99 ? N3 SSA 500 A 1 
HETATM 29 C C4 SSA . . . C 2 25.259 -0.757 -5.154 1 43.07 ? C4 SSA 500 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#