data_2HL2 # _model_server_result.job_id JYOMFOiWkYBeXa2j-W9F1A _model_server_result.datetime_utc '2024-10-28 17:22:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2HL2 # _exptl.entry_id 2HL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.397 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HL2 _cell.length_a 39.652 _cell.length_b 67.363 _cell.length_c 98.588 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C13 H19 N7 O8 S' _chem_comp.formula_weight 433.397 _chem_comp.id SSA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 CA SSA sing 290 n n N10 HN11 SSA sing 291 n n N10 HN12 SSA sing 292 n n CA CB SSA sing 293 n n CA C9 SSA sing 294 n n CA HA SSA sing 295 n n CB OG SSA sing 296 n n CB HB1 SSA sing 297 n n CB HB2 SSA sing 298 n n OG HOG SSA sing 299 n n C9 O9 SSA doub 300 n n C9 N8 SSA sing 301 n n N8 S1 SSA sing 302 n n N8 HN8 SSA sing 303 n n S1 O1S SSA doub 304 n n S1 O2S SSA doub 305 n n S1 O5' SSA sing 306 n n O5' C5' SSA sing 307 n n C5' C4' SSA sing 308 n n C5' "H5'1" SSA sing 309 n n C5' "H5'2" SSA sing 310 n n C4' O4' SSA sing 311 n n C4' C3' SSA sing 312 n n C4' H4' SSA sing 313 n n O4' C1' SSA sing 314 n n C3' O3' SSA sing 315 n n C3' C2' SSA sing 316 n n C3' H3' SSA sing 317 n n O3' HO3' SSA sing 318 n n C2' O2' SSA sing 319 n n C2' C1' SSA sing 320 n n C2' H2' SSA sing 321 n n O2' HO2' SSA sing 322 n n C1' N9 SSA sing 323 n n C1' H1' SSA sing 324 n n N9 C8 SSA sing 325 n y N9 C4 SSA sing 326 n y C8 N7 SSA doub 327 n y C8 H8 SSA sing 328 n n N7 C5 SSA sing 329 n y C5 C6 SSA sing 330 n y C5 C4 SSA doub 331 n y C6 N6 SSA sing 332 n n C6 N1 SSA doub 333 n y N6 HN61 SSA sing 334 n n N6 HN62 SSA sing 335 n n N1 C2 SSA sing 336 n y C2 N3 SSA doub 337 n y C2 H2 SSA sing 338 n n N3 C4 SSA sing 339 n y # _atom_sites.entry_id 2HL2 _atom_sites.fract_transf_matrix[1][1] 0.025219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SSA A 1 500 500 SSA SSA . D 2 SSA B 1 501 501 SSA SSA . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1002 1002 HOH HOH . E 3 HOH A 3 1003 1003 HOH HOH . E 3 HOH A 4 1005 1005 HOH HOH . E 3 HOH A 5 1007 1007 HOH HOH . E 3 HOH A 6 1010 1010 HOH HOH . E 3 HOH A 7 1014 1014 HOH HOH . E 3 HOH A 8 1015 1015 HOH HOH . E 3 HOH A 9 1019 1019 HOH HOH . E 3 HOH A 10 1020 1020 HOH HOH . E 3 HOH A 11 1021 1021 HOH HOH . E 3 HOH A 12 1022 1022 HOH HOH . E 3 HOH A 13 1023 1023 HOH HOH . E 3 HOH A 14 1024 1024 HOH HOH . E 3 HOH A 15 1027 1027 HOH HOH . E 3 HOH A 16 1028 1028 HOH HOH . E 3 HOH A 17 1029 1029 HOH HOH . E 3 HOH A 18 1030 1030 HOH HOH . E 3 HOH A 19 1031 1031 HOH HOH . E 3 HOH A 20 1032 1032 HOH HOH . E 3 HOH A 21 1033 1033 HOH HOH . E 3 HOH A 22 1034 1034 HOH HOH . E 3 HOH A 23 1038 1038 HOH HOH . E 3 HOH A 24 1039 1039 HOH HOH . E 3 HOH A 25 1041 1041 HOH HOH . E 3 HOH A 26 1042 1042 HOH HOH . E 3 HOH A 27 1043 1043 HOH HOH . E 3 HOH A 28 1044 1044 HOH HOH . E 3 HOH A 29 1046 1046 HOH HOH . E 3 HOH A 30 1047 1047 HOH HOH . E 3 HOH A 31 1050 1050 HOH HOH . E 3 HOH A 32 1051 1051 HOH HOH . E 3 HOH A 33 1052 1052 HOH HOH . E 3 HOH A 34 1053 1053 HOH HOH . E 3 HOH A 35 1058 1058 HOH HOH . E 3 HOH A 36 1061 1061 HOH HOH . E 3 HOH A 37 1067 1067 HOH HOH . E 3 HOH A 38 1068 1068 HOH HOH . E 3 HOH A 39 1070 1070 HOH HOH . E 3 HOH A 40 1072 1072 HOH HOH . E 3 HOH A 41 1073 1073 HOH HOH . E 3 HOH A 42 1074 1074 HOH HOH . E 3 HOH A 43 1077 1077 HOH HOH . E 3 HOH A 44 1078 1078 HOH HOH . E 3 HOH A 45 1080 1080 HOH HOH . E 3 HOH A 46 1084 1084 HOH HOH . E 3 HOH A 47 1086 1086 HOH HOH . F 3 HOH B 1 1004 1004 HOH HOH . F 3 HOH B 2 1006 1006 HOH HOH . F 3 HOH B 3 1008 1008 HOH HOH . F 3 HOH B 4 1009 1009 HOH HOH . F 3 HOH B 5 1011 1011 HOH HOH . F 3 HOH B 6 1012 1012 HOH HOH . F 3 HOH B 7 1013 1013 HOH HOH . F 3 HOH B 8 1016 1016 HOH HOH . F 3 HOH B 9 1017 1017 HOH HOH . F 3 HOH B 10 1018 1018 HOH HOH . F 3 HOH B 11 1025 1025 HOH HOH . F 3 HOH B 12 1026 1026 HOH HOH . F 3 HOH B 13 1035 1035 HOH HOH . F 3 HOH B 14 1036 1036 HOH HOH . F 3 HOH B 15 1037 1037 HOH HOH . F 3 HOH B 16 1040 1040 HOH HOH . F 3 HOH B 17 1045 1045 HOH HOH . F 3 HOH B 18 1048 1048 HOH HOH . F 3 HOH B 19 1049 1049 HOH HOH . F 3 HOH B 20 1054 1054 HOH HOH . F 3 HOH B 21 1055 1055 HOH HOH . F 3 HOH B 22 1056 1056 HOH HOH . F 3 HOH B 23 1057 1057 HOH HOH . F 3 HOH B 24 1059 1059 HOH HOH . F 3 HOH B 25 1060 1060 HOH HOH . F 3 HOH B 26 1062 1062 HOH HOH . F 3 HOH B 27 1063 1063 HOH HOH . F 3 HOH B 28 1064 1064 HOH HOH . F 3 HOH B 29 1065 1065 HOH HOH . F 3 HOH B 30 1066 1066 HOH HOH . F 3 HOH B 31 1069 1069 HOH HOH . F 3 HOH B 32 1071 1071 HOH HOH . F 3 HOH B 33 1075 1075 HOH HOH . F 3 HOH B 34 1076 1076 HOH HOH . F 3 HOH B 35 1079 1079 HOH HOH . F 3 HOH B 36 1081 1081 HOH HOH . F 3 HOH B 37 1082 1082 HOH HOH . F 3 HOH B 38 1083 1083 HOH HOH . F 3 HOH B 39 1085 1085 HOH HOH . F 3 HOH B 40 1087 1087 HOH HOH . F 3 HOH B 41 1088 1088 HOH HOH . F 3 HOH B 42 1089 1089 HOH HOH . F 3 HOH B 43 1090 1090 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 SSA . . . D 2 4.646 -10.957 14.78 1 78.01 ? N10 SSA 501 B 1 HETATM 2 C CA SSA . . . D 2 5.244 -11.311 13.485 1 76.63 ? CA SSA 501 B 1 HETATM 3 C CB SSA . . . D 2 4.387 -10.749 12.348 1 76.84 ? CB SSA 501 B 1 HETATM 4 O OG SSA . . . D 2 4.308 -9.325 12.453 1 75.87 ? OG SSA 501 B 1 HETATM 5 C C9 SSA . . . D 2 6.666 -10.749 13.397 1 76.24 ? C9 SSA 501 B 1 HETATM 6 O O9 SSA . . . D 2 7.461 -11.189 12.567 1 77.56 ? O9 SSA 501 B 1 HETATM 7 N N8 SSA . . . D 2 6.949 -9.769 14.252 1 73.2 ? N8 SSA 501 B 1 HETATM 8 S S1 SSA . . . D 2 8.432 -9.089 14.259 1 70.15 ? S1 SSA 501 B 1 HETATM 9 O O1S SSA . . . D 2 8.734 -8.538 12.897 1 70.26 ? O1S SSA 501 B 1 HETATM 10 O O2S SSA . . . D 2 9.402 -10.086 14.591 1 69.17 ? O2S SSA 501 B 1 HETATM 11 O O5' SSA . . . D 2 8.501 -8.036 15.226 1 66.98 ? O5' SSA 501 B 1 HETATM 12 C C5' SSA . . . D 2 7.63 -6.902 15.159 1 58.83 ? C5' SSA 501 B 1 HETATM 13 C C4' SSA . . . D 2 8.199 -5.72 15.948 1 53.07 ? C4' SSA 501 B 1 HETATM 14 O O4' SSA . . . D 2 8.565 -6.091 17.288 1 51.21 ? O4' SSA 501 B 1 HETATM 15 C C3' SSA . . . D 2 9.479 -5.168 15.321 1 52.36 ? C3' SSA 501 B 1 HETATM 16 O O3' SSA . . . D 2 9.141 -4.24 14.286 1 53.19 ? O3' SSA 501 B 1 HETATM 17 C C2' SSA . . . D 2 10.026 -4.409 16.527 1 49.39 ? C2' SSA 501 B 1 HETATM 18 O O2' SSA . . . D 2 9.206 -3.275 16.82 1 46.6 ? O2' SSA 501 B 1 HETATM 19 C C1' SSA . . . D 2 9.832 -5.481 17.601 1 49.86 ? C1' SSA 501 B 1 HETATM 20 N N9 SSA . . . D 2 10.882 -6.525 17.527 1 49.91 ? N9 SSA 501 B 1 HETATM 21 C C8 SSA . . . D 2 10.688 -7.833 17.694 1 48.42 ? C8 SSA 501 B 1 HETATM 22 N N7 SSA . . . D 2 11.848 -8.48 17.615 1 46.91 ? N7 SSA 501 B 1 HETATM 23 C C5 SSA . . . D 2 12.798 -7.574 17.395 1 46.78 ? C5 SSA 501 B 1 HETATM 24 C C6 SSA . . . D 2 14.179 -7.628 17.25 1 43.77 ? C6 SSA 501 B 1 HETATM 25 N N6 SSA . . . D 2 14.814 -8.796 17.294 1 42.6 ? N6 SSA 501 B 1 HETATM 26 N N1 SSA . . . D 2 14.862 -6.488 17.061 1 41.91 ? N1 SSA 501 B 1 HETATM 27 C C2 SSA . . . D 2 14.247 -5.319 17.009 1 41.04 ? C2 SSA 501 B 1 HETATM 28 N N3 SSA . . . D 2 12.934 -5.232 17.143 1 43.59 ? N3 SSA 501 B 1 HETATM 29 C C4 SSA . . . D 2 12.185 -6.329 17.336 1 47.99 ? C4 SSA 501 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #