data_2HMF
#
_model_server_result.job_id            3i4_1X2WWAXm2suK8zZqHw 
_model_server_result.datetime_utc      '2024-11-13 21:17:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":504}' 
#
_entry.id    2HMF 
#
_exptl.entry_id    2HMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              133.103 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ASPARTIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HMF 
_cell.length_a            101.741 
_cell.length_b            104.508 
_cell.length_c            192.92 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E MG MG . A MG 471 1_555 F O3B ADP . A ADP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc2 E MG MG . A MG 471 1_555 F O1A ADP . A ADP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc3 H MG MG . B MG 471 1_555 I O3B ADP . B ADP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc4 H MG MG . B MG 471 1_555 I O1A ADP . B ADP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc5 H MG MG . B MG 471 1_555 R O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc6 K MG MG . C MG 471 1_555 L O1A ADP . C ADP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc7 K MG MG . C MG 471 1_555 L O3B ADP . C ADP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc8 N MG MG . D MG 471 1_555 O O1A ADP . D ADP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc9 N MG MG . D MG 471 1_555 O O3B ADP . D ADP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc10 N MG MG . D MG 471 1_555 T O HOH . D HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
#
_chem_comp.formula           'C4 H7 N O4' 
_chem_comp.formula_weight    133.103 
_chem_comp.id                ASP 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'ASPARTIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ASP sing 99 n n 
N H ASP sing 100 n n 
N H2 ASP sing 101 n n 
CA C ASP sing 102 n n 
CA CB ASP sing 103 n n 
CA HA ASP sing 104 n n 
C O ASP doub 105 n n 
C OXT ASP sing 106 n n 
CB CG ASP sing 107 n n 
CB HB2 ASP sing 108 n n 
CB HB3 ASP sing 109 n n 
CG OD1 ASP doub 110 n n 
CG OD2 ASP sing 111 n n 
OD2 HD2 ASP sing 112 n n 
OXT HXT ASP sing 113 n n 
#
_atom_sites.entry_id                     2HMF 
_atom_sites.fract_transf_matrix[1][1]    0.009829 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 471 1 MG MG . 
F 3 ADP A 1 472 1 ADP ADP . 
G 4 ASP A 1 502 2 ASP LIG . 
H 2 MG B 1 471 2 MG MG . 
I 3 ADP B 1 472 2 ADP ADP . 
J 4 ASP B 1 501 1 ASP LIG . 
K 2 MG C 1 471 3 MG MG . 
L 3 ADP C 1 472 3 ADP ADP . 
M 4 ASP C 1 503 3 ASP LIG . 
N 2 MG D 1 471 4 MG MG . 
O 3 ADP D 1 472 4 ADP ADP . 
P 4 ASP D 1 504 4 ASP LIG . 
Q 5 HOH A 1 503 6 HOH HOH . 
Q 5 HOH A 2 504 12 HOH HOH . 
Q 5 HOH A 3 505 15 HOH HOH . 
Q 5 HOH A 4 506 24 HOH HOH . 
Q 5 HOH A 5 507 32 HOH HOH . 
Q 5 HOH A 6 508 33 HOH HOH . 
Q 5 HOH A 7 509 34 HOH HOH . 
Q 5 HOH A 8 510 35 HOH HOH . 
Q 5 HOH A 9 511 36 HOH HOH . 
Q 5 HOH A 10 512 42 HOH HOH . 
Q 5 HOH A 11 513 47 HOH HOH . 
Q 5 HOH A 12 514 51 HOH HOH . 
Q 5 HOH A 13 515 53 HOH HOH . 
Q 5 HOH A 14 516 57 HOH HOH . 
Q 5 HOH A 15 517 59 HOH HOH . 
Q 5 HOH A 16 518 60 HOH HOH . 
Q 5 HOH A 17 519 61 HOH HOH . 
Q 5 HOH A 18 520 65 HOH HOH . 
Q 5 HOH A 19 521 67 HOH HOH . 
Q 5 HOH A 20 522 68 HOH HOH . 
Q 5 HOH A 21 523 80 HOH HOH . 
Q 5 HOH A 22 524 82 HOH HOH . 
Q 5 HOH A 23 525 92 HOH HOH . 
Q 5 HOH A 24 526 115 HOH HOH . 
Q 5 HOH A 25 527 121 HOH HOH . 
Q 5 HOH A 26 528 124 HOH HOH . 
Q 5 HOH A 27 529 125 HOH HOH . 
Q 5 HOH A 28 530 128 HOH HOH . 
Q 5 HOH A 29 531 144 HOH HOH . 
Q 5 HOH A 30 532 154 HOH HOH . 
Q 5 HOH A 31 533 165 HOH HOH . 
Q 5 HOH A 32 534 169 HOH HOH . 
R 5 HOH B 1 502 9 HOH HOH . 
R 5 HOH B 2 503 10 HOH HOH . 
R 5 HOH B 3 504 13 HOH HOH . 
R 5 HOH B 4 505 20 HOH HOH . 
R 5 HOH B 5 506 23 HOH HOH . 
R 5 HOH B 6 507 26 HOH HOH . 
R 5 HOH B 7 508 28 HOH HOH . 
R 5 HOH B 8 509 30 HOH HOH . 
R 5 HOH B 9 510 43 HOH HOH . 
R 5 HOH B 10 511 45 HOH HOH . 
R 5 HOH B 11 512 56 HOH HOH . 
R 5 HOH B 12 513 70 HOH HOH . 
R 5 HOH B 13 514 76 HOH HOH . 
R 5 HOH B 14 515 87 HOH HOH . 
R 5 HOH B 15 516 89 HOH HOH . 
R 5 HOH B 16 517 96 HOH HOH . 
R 5 HOH B 17 518 97 HOH HOH . 
R 5 HOH B 18 519 105 HOH HOH . 
R 5 HOH B 19 520 107 HOH HOH . 
R 5 HOH B 20 521 108 HOH HOH . 
R 5 HOH B 21 522 113 HOH HOH . 
R 5 HOH B 22 523 118 HOH HOH . 
R 5 HOH B 23 524 120 HOH HOH . 
R 5 HOH B 24 525 122 HOH HOH . 
R 5 HOH B 25 526 130 HOH HOH . 
R 5 HOH B 26 527 132 HOH HOH . 
R 5 HOH B 27 528 136 HOH HOH . 
R 5 HOH B 28 529 143 HOH HOH . 
R 5 HOH B 29 530 155 HOH HOH . 
R 5 HOH B 30 531 159 HOH HOH . 
R 5 HOH B 31 532 161 HOH HOH . 
R 5 HOH B 32 533 178 HOH HOH . 
R 5 HOH B 33 534 182 HOH HOH . 
S 5 HOH C 1 504 3 HOH HOH . 
S 5 HOH C 2 505 16 HOH HOH . 
S 5 HOH C 3 506 19 HOH HOH . 
S 5 HOH C 4 507 27 HOH HOH . 
S 5 HOH C 5 508 29 HOH HOH . 
S 5 HOH C 6 509 38 HOH HOH . 
S 5 HOH C 7 510 64 HOH HOH . 
S 5 HOH C 8 511 74 HOH HOH . 
S 5 HOH C 9 512 94 HOH HOH . 
S 5 HOH C 10 513 99 HOH HOH . 
S 5 HOH C 11 514 103 HOH HOH . 
S 5 HOH C 12 515 104 HOH HOH . 
S 5 HOH C 13 516 110 HOH HOH . 
S 5 HOH C 14 517 117 HOH HOH . 
S 5 HOH C 15 518 123 HOH HOH . 
S 5 HOH C 16 519 129 HOH HOH . 
S 5 HOH C 17 520 147 HOH HOH . 
S 5 HOH C 18 521 150 HOH HOH . 
S 5 HOH C 19 522 164 HOH HOH . 
S 5 HOH C 20 523 180 HOH HOH . 
T 5 HOH D 1 505 2 HOH HOH . 
T 5 HOH D 2 506 4 HOH HOH . 
T 5 HOH D 3 507 5 HOH HOH . 
T 5 HOH D 4 508 14 HOH HOH . 
T 5 HOH D 5 509 18 HOH HOH . 
T 5 HOH D 6 510 22 HOH HOH . 
T 5 HOH D 7 511 31 HOH HOH . 
T 5 HOH D 8 512 37 HOH HOH . 
T 5 HOH D 9 513 40 HOH HOH . 
T 5 HOH D 10 514 46 HOH HOH . 
T 5 HOH D 11 515 52 HOH HOH . 
T 5 HOH D 12 516 71 HOH HOH . 
T 5 HOH D 13 517 72 HOH HOH . 
T 5 HOH D 14 518 73 HOH HOH . 
T 5 HOH D 15 519 78 HOH HOH . 
T 5 HOH D 16 520 79 HOH HOH . 
T 5 HOH D 17 521 81 HOH HOH . 
T 5 HOH D 18 522 83 HOH HOH . 
T 5 HOH D 19 523 86 HOH HOH . 
T 5 HOH D 20 524 88 HOH HOH . 
T 5 HOH D 21 525 95 HOH HOH . 
T 5 HOH D 22 526 100 HOH HOH . 
T 5 HOH D 23 527 102 HOH HOH . 
T 5 HOH D 24 528 109 HOH HOH . 
T 5 HOH D 25 529 111 HOH HOH . 
T 5 HOH D 26 530 126 HOH HOH . 
T 5 HOH D 27 531 131 HOH HOH . 
T 5 HOH D 28 532 134 HOH HOH . 
T 5 HOH D 29 533 135 HOH HOH . 
T 5 HOH D 30 534 141 HOH HOH . 
T 5 HOH D 31 535 142 HOH HOH . 
T 5 HOH D 32 536 151 HOH HOH . 
T 5 HOH D 33 537 152 HOH HOH . 
T 5 HOH D 34 538 157 HOH HOH . 
T 5 HOH D 35 539 158 HOH HOH . 
T 5 HOH D 36 540 163 HOH HOH . 
T 5 HOH D 37 541 167 HOH HOH . 
T 5 HOH D 38 542 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ASP . . . P 4 -34.077 14.353 37.338 1 28.43 ? N ASP 504 D 1 
HETATM 2 C CA ASP . . . P 4 -33.164 13.683 38.273 1 28.62 ? CA ASP 504 D 1 
HETATM 3 C C ASP . . . P 4 -33.838 12.486 38.956 1 29.09 ? C ASP 504 D 1 
HETATM 4 O O ASP . . . P 4 -34.953 12.101 38.49 1 28.66 ? O ASP 504 D 1 
HETATM 5 C CB ASP . . . P 4 -32.66 14.662 39.349 1 29.08 ? CB ASP 504 D 1 
HETATM 6 C CG ASP . . . P 4 -33.762 15.413 40.111 1 29.13 ? CG ASP 504 D 1 
HETATM 7 O OD1 ASP . . . P 4 -33.413 16.196 41.041 1 28.08 ? OD1 ASP 504 D 1 
HETATM 8 O OD2 ASP . . . P 4 -34.927 15.188 39.739 1 30.22 ? OD2 ASP 504 D 1 
HETATM 9 O OXT ASP . . . P 4 -33.198 11.975 39.923 1 29.02 ? OXT ASP 504 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#