data_2HMS # _model_server_result.job_id KBox26HAjmCbBDegr2np1Q _model_server_result.datetime_utc '2024-11-16 13:25:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 2HMS # _exptl.entry_id 2HMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HMS _cell.length_a 164.881 _cell.length_b 164.881 _cell.length_c 57.24 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_755 -x+y+2,y,-z+1/3 -1 0 0 0 1 0 0 0 -1 329.762 0 19.08 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 2HMS _atom_sites.fract_transf_matrix[1][1] 0.006065 _atom_sites.fract_transf_matrix[1][2] 0.003502 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAI A 1 601 601 NAI NAI . F 2 NAI B 1 602 602 NAI NAI . G 2 NAI C 1 603 603 NAI NAI . H 2 NAI D 1 604 604 NAI NAI . I 3 HOH A 1 602 5 HOH HOH . I 3 HOH A 2 603 6 HOH HOH . I 3 HOH A 3 604 7 HOH HOH . I 3 HOH A 4 605 9 HOH HOH . I 3 HOH A 5 606 11 HOH HOH . I 3 HOH A 6 607 26 HOH HOH . J 3 HOH B 1 603 1 HOH HOH . J 3 HOH B 2 604 2 HOH HOH . J 3 HOH B 3 605 8 HOH HOH . J 3 HOH B 4 606 13 HOH HOH . J 3 HOH B 5 607 16 HOH HOH . J 3 HOH B 6 608 17 HOH HOH . J 3 HOH B 7 609 21 HOH HOH . J 3 HOH B 8 610 22 HOH HOH . K 3 HOH C 1 604 10 HOH HOH . K 3 HOH C 2 605 19 HOH HOH . K 3 HOH C 3 606 20 HOH HOH . K 3 HOH C 4 607 24 HOH HOH . K 3 HOH C 5 608 27 HOH HOH . L 3 HOH D 1 605 3 HOH HOH . L 3 HOH D 2 606 4 HOH HOH . L 3 HOH D 3 607 12 HOH HOH . L 3 HOH D 4 608 14 HOH HOH . L 3 HOH D 5 609 15 HOH HOH . L 3 HOH D 6 610 18 HOH HOH . L 3 HOH D 7 611 23 HOH HOH . L 3 HOH D 8 612 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . E 2 144.816 36.024 2.744 1 93.79 ? PA NAI 601 A 1 HETATM 2 O O1A NAI . . . E 2 144.578 37.216 3.558 1 98.9 ? O1A NAI 601 A 1 HETATM 3 O O2A NAI . . . E 2 145.496 36.339 1.477 1 94.14 ? O2A NAI 601 A 1 HETATM 4 O O5B NAI . . . E 2 143.491 35.245 2.327 1 64.16 ? O5B NAI 601 A 1 HETATM 5 C C5B NAI . . . E 2 142.319 35.935 1.86 1 56.68 ? C5B NAI 601 A 1 HETATM 6 C C4B NAI . . . E 2 141.996 35.447 0.483 1 61.41 ? C4B NAI 601 A 1 HETATM 7 O O4B NAI . . . E 2 140.914 36.307 0.022 1 62.75 ? O4B NAI 601 A 1 HETATM 8 C C3B NAI . . . E 2 143.13 35.614 -0.551 1 60.32 ? C3B NAI 601 A 1 HETATM 9 O O3B NAI . . . E 2 143.318 34.449 -1.364 1 74.64 ? O3B NAI 601 A 1 HETATM 10 C C2B NAI . . . E 2 142.719 36.882 -1.313 1 50.83 ? C2B NAI 601 A 1 HETATM 11 O O2B NAI . . . E 2 143.212 36.885 -2.674 1 64.11 ? O2B NAI 601 A 1 HETATM 12 C C1B NAI . . . E 2 141.197 36.854 -1.228 1 50.62 ? C1B NAI 601 A 1 HETATM 13 N N9A NAI . . . E 2 140.615 38.193 -1.27 1 57.84 ? N9A NAI 601 A 1 HETATM 14 C C8A NAI . . . E 2 141.046 39.353 -0.651 1 68.48 ? C8A NAI 601 A 1 HETATM 15 N N7A NAI . . . E 2 140.266 40.437 -0.902 1 61.43 ? N7A NAI 601 A 1 HETATM 16 C C5A NAI . . . E 2 139.278 39.913 -1.738 1 49.12 ? C5A NAI 601 A 1 HETATM 17 C C6A NAI . . . E 2 138.138 40.528 -2.371 1 60.36 ? C6A NAI 601 A 1 HETATM 18 N N6A NAI . . . E 2 137.84 41.817 -2.229 1 73.23 ? N6A NAI 601 A 1 HETATM 19 N N1A NAI . . . E 2 137.339 39.699 -3.158 1 71.47 ? N1A NAI 601 A 1 HETATM 20 C C2A NAI . . . E 2 137.659 38.352 -3.297 1 80.97 ? C2A NAI 601 A 1 HETATM 21 N N3A NAI . . . E 2 138.686 37.701 -2.753 1 50.06 ? N3A NAI 601 A 1 HETATM 22 C C4A NAI . . . E 2 139.469 38.529 -1.98 1 61.62 ? C4A NAI 601 A 1 HETATM 23 O O3 NAI . . . E 2 145.551 34.944 3.567 1 104.89 ? O3 NAI 601 A 1 HETATM 24 P PN NAI . . . E 2 145.061 33.942 4.703 1 138.27 ? PN NAI 601 A 1 HETATM 25 O O1N NAI . . . E 2 144.86 32.612 4.056 1 122.29 ? O1N NAI 601 A 1 HETATM 26 O O2N NAI . . . E 2 143.839 34.536 5.284 1 105.9 ? O2N NAI 601 A 1 HETATM 27 O O5D NAI . . . E 2 146.336 33.869 5.667 1 145.52 ? O5D NAI 601 A 1 HETATM 28 C C5D NAI . . . E 2 146.2 33.297 6.99 1 143.98 ? C5D NAI 601 A 1 HETATM 29 C C4D NAI . . . E 2 146.566 34.348 8.019 1 146.89 ? C4D NAI 601 A 1 HETATM 30 O O4D NAI . . . E 2 147.84 34.962 7.647 1 152.79 ? O4D NAI 601 A 1 HETATM 31 C C3D NAI . . . E 2 145.526 35.467 8.161 1 147.9 ? C3D NAI 601 A 1 HETATM 32 O O3D NAI . . . E 2 145.027 35.66 9.499 1 133.89 ? O3D NAI 601 A 1 HETATM 33 C C2D NAI . . . E 2 146.263 36.692 7.581 1 155.2 ? C2D NAI 601 A 1 HETATM 34 O O2D NAI . . . E 2 145.785 37.91 8.206 1 156.01 ? O2D NAI 601 A 1 HETATM 35 C C1D NAI . . . E 2 147.718 36.348 7.861 1 164.8 ? C1D NAI 601 A 1 HETATM 36 N N1N NAI . . . E 2 148.705 37.093 7.008 1 173.78 ? N1N NAI 601 A 1 HETATM 37 C C2N NAI . . . E 2 148.786 36.694 5.665 1 169.44 ? C2N NAI 601 A 1 HETATM 38 C C3N NAI . . . E 2 149.703 37.38 4.862 1 160.35 ? C3N NAI 601 A 1 HETATM 39 C C7N NAI . . . E 2 149.891 37.048 3.38 1 153.57 ? C7N NAI 601 A 1 HETATM 40 O O7N NAI . . . E 2 150.714 37.686 2.734 1 147.13 ? O7N NAI 601 A 1 HETATM 41 N N7N NAI . . . E 2 149.162 36.072 2.814 1 142.59 ? N7N NAI 601 A 1 HETATM 42 C C4N NAI . . . E 2 150.533 38.457 5.397 1 159.29 ? C4N NAI 601 A 1 HETATM 43 C C5N NAI . . . E 2 150.345 38.755 6.777 1 156.82 ? C5N NAI 601 A 1 HETATM 44 C C6N NAI . . . E 2 149.465 38.126 7.628 1 164.09 ? C6N NAI 601 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 44 #