data_2HMS
#
_model_server_result.job_id            ZAOW0XB8t86ItJuxNKihSw 
_model_server_result.datetime_utc      '2024-11-16 13:38:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hms 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":603}' 
#
_entry.id    2HMS 
#
_exptl.entry_id    2HMS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2HMS 
_cell.length_a            164.881 
_cell.length_b            164.881 
_cell.length_c            57.24 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HMS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        151 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 1 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_755 -x+y+2,y,-z+1/3 -1 0 0 0 1 0 0 0 -1 329.762 0 19.08 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 237 n n 
PA O2A NAI sing 238 n n 
PA O5B NAI sing 239 n n 
PA O3 NAI sing 240 n n 
O2A HOA2 NAI sing 241 n n 
O5B C5B NAI sing 242 n n 
C5B C4B NAI sing 243 n n 
C5B H51A NAI sing 244 n n 
C5B H52A NAI sing 245 n n 
C4B O4B NAI sing 246 n n 
C4B C3B NAI sing 247 n n 
C4B H4B NAI sing 248 n n 
O4B C1B NAI sing 249 n n 
C3B O3B NAI sing 250 n n 
C3B C2B NAI sing 251 n n 
C3B H3B NAI sing 252 n n 
O3B HO3A NAI sing 253 n n 
C2B O2B NAI sing 254 n n 
C2B C1B NAI sing 255 n n 
C2B H2B NAI sing 256 n n 
O2B HO2A NAI sing 257 n n 
C1B N9A NAI sing 258 n n 
C1B H1B NAI sing 259 n n 
N9A C8A NAI sing 260 n y 
N9A C4A NAI sing 261 n y 
C8A N7A NAI doub 262 n y 
C8A H8A NAI sing 263 n n 
N7A C5A NAI sing 264 n y 
C5A C6A NAI sing 265 n y 
C5A C4A NAI doub 266 n y 
C6A N6A NAI sing 267 n n 
C6A N1A NAI doub 268 n y 
N6A H61A NAI sing 269 n n 
N6A H62A NAI sing 270 n n 
N1A C2A NAI sing 271 n y 
C2A N3A NAI doub 272 n y 
C2A H2A NAI sing 273 n n 
N3A C4A NAI sing 274 n y 
O3 PN NAI sing 275 n n 
PN O1N NAI sing 276 n n 
PN O2N NAI doub 277 n n 
PN O5D NAI sing 278 n n 
O1N HO1N NAI sing 279 n n 
O5D C5D NAI sing 280 n n 
C5D C4D NAI sing 281 n n 
C5D H51N NAI sing 282 n n 
C5D H52N NAI sing 283 n n 
C4D O4D NAI sing 284 n n 
C4D C3D NAI sing 285 n n 
C4D H4D NAI sing 286 n n 
O4D C1D NAI sing 287 n n 
C3D O3D NAI sing 288 n n 
C3D C2D NAI sing 289 n n 
C3D H3D NAI sing 290 n n 
O3D HO3N NAI sing 291 n n 
C2D O2D NAI sing 292 n n 
C2D C1D NAI sing 293 n n 
C2D H2D NAI sing 294 n n 
O2D HO2N NAI sing 295 n n 
C1D N1N NAI sing 296 n n 
C1D H1D NAI sing 297 n n 
N1N C2N NAI sing 298 n n 
N1N C6N NAI sing 299 n n 
C2N C3N NAI doub 300 n n 
C2N H2N NAI sing 301 n n 
C3N C7N NAI sing 302 n n 
C3N C4N NAI sing 303 n n 
C7N O7N NAI doub 304 n n 
C7N N7N NAI sing 305 n n 
N7N H71N NAI sing 306 n n 
N7N H72N NAI sing 307 n n 
C4N C5N NAI sing 308 n n 
C4N H4N NAI sing 309 n n 
C4N H42N NAI sing 310 n n 
C5N C6N NAI doub 311 n n 
C5N H5N NAI sing 312 n n 
C6N H6N NAI sing 313 n n 
#
_atom_sites.entry_id                     2HMS 
_atom_sites.fract_transf_matrix[1][1]    0.006065 
_atom_sites.fract_transf_matrix[1][2]    0.003502 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007003 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAI A 1 601 601 NAI NAI . 
F 2 NAI B 1 602 602 NAI NAI . 
G 2 NAI C 1 603 603 NAI NAI . 
H 2 NAI D 1 604 604 NAI NAI . 
I 3 HOH A 1 602 5 HOH HOH . 
I 3 HOH A 2 603 6 HOH HOH . 
I 3 HOH A 3 604 7 HOH HOH . 
I 3 HOH A 4 605 9 HOH HOH . 
I 3 HOH A 5 606 11 HOH HOH . 
I 3 HOH A 6 607 26 HOH HOH . 
J 3 HOH B 1 603 1 HOH HOH . 
J 3 HOH B 2 604 2 HOH HOH . 
J 3 HOH B 3 605 8 HOH HOH . 
J 3 HOH B 4 606 13 HOH HOH . 
J 3 HOH B 5 607 16 HOH HOH . 
J 3 HOH B 6 608 17 HOH HOH . 
J 3 HOH B 7 609 21 HOH HOH . 
J 3 HOH B 8 610 22 HOH HOH . 
K 3 HOH C 1 604 10 HOH HOH . 
K 3 HOH C 2 605 19 HOH HOH . 
K 3 HOH C 3 606 20 HOH HOH . 
K 3 HOH C 4 607 24 HOH HOH . 
K 3 HOH C 5 608 27 HOH HOH . 
L 3 HOH D 1 605 3 HOH HOH . 
L 3 HOH D 2 606 4 HOH HOH . 
L 3 HOH D 3 607 12 HOH HOH . 
L 3 HOH D 4 608 14 HOH HOH . 
L 3 HOH D 5 609 15 HOH HOH . 
L 3 HOH D 6 610 18 HOH HOH . 
L 3 HOH D 7 611 23 HOH HOH . 
L 3 HOH D 8 612 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . G 2 144.903 59.181 16.382 1 97.63 ? PA NAI 603 C 1 
HETATM 2 O O1A NAI . . . G 2 144.646 58.002 15.555 1 96.18 ? O1A NAI 603 C 1 
HETATM 3 O O2A NAI . . . G 2 145.552 58.837 17.656 1 101.64 ? O2A NAI 603 C 1 
HETATM 4 O O5B NAI . . . G 2 143.592 59.994 16.792 1 67.29 ? O5B NAI 603 C 1 
HETATM 5 C C5B NAI . . . G 2 142.4 59.326 17.261 1 42.06 ? C5B NAI 603 C 1 
HETATM 6 C C4B NAI . . . G 2 142.055 59.823 18.64 1 55.48 ? C4B NAI 603 C 1 
HETATM 7 O O4B NAI . . . G 2 140.966 58.965 19.107 1 61.24 ? O4B NAI 603 C 1 
HETATM 8 C C3B NAI . . . G 2 143.166 59.665 19.699 1 62.29 ? C3B NAI 603 C 1 
HETATM 9 O O3B NAI . . . G 2 143.246 60.805 20.573 1 63.44 ? O3B NAI 603 C 1 
HETATM 10 C C2B NAI . . . G 2 142.791 58.337 20.375 1 59.83 ? C2B NAI 603 C 1 
HETATM 11 O O2B NAI . . . G 2 143.319 58.238 21.72 1 70.95 ? O2B NAI 603 C 1 
HETATM 12 C C1B NAI . . . G 2 141.279 58.372 20.332 1 48.84 ? C1B NAI 603 C 1 
HETATM 13 N N9A NAI . . . G 2 140.689 57.038 20.358 1 66.56 ? N9A NAI 603 C 1 
HETATM 14 C C8A NAI . . . G 2 141.123 55.865 19.766 1 58.75 ? C8A NAI 603 C 1 
HETATM 15 N N7A NAI . . . G 2 140.315 54.795 20.002 1 58.48 ? N7A NAI 603 C 1 
HETATM 16 C C5A NAI . . . G 2 139.308 55.349 20.8 1 54.27 ? C5A NAI 603 C 1 
HETATM 17 C C6A NAI . . . G 2 138.13 54.766 21.405 1 57.14 ? C6A NAI 603 C 1 
HETATM 18 N N6A NAI . . . G 2 137.803 53.484 21.273 1 66.32 ? N6A NAI 603 C 1 
HETATM 19 N N1A NAI . . . G 2 137.327 55.619 22.149 1 62.03 ? N1A NAI 603 C 1 
HETATM 20 C C2A NAI . . . G 2 137.671 56.961 22.282 1 71.47 ? C2A NAI 603 C 1 
HETATM 21 N N3A NAI . . . G 2 138.727 57.583 21.766 1 54.56 ? N3A NAI 603 C 1 
HETATM 22 C C4A NAI . . . G 2 139.518 56.73 21.031 1 70.87 ? C4A NAI 603 C 1 
HETATM 23 O O3 NAI . . . G 2 145.676 60.239 15.567 1 116.03 ? O3 NAI 603 C 1 
HETATM 24 P PN NAI . . . G 2 145.214 61.261 14.441 1 156.53 ? PN NAI 603 C 1 
HETATM 25 O O1N NAI . . . G 2 145.04 62.584 15.109 1 136.71 ? O1N NAI 603 C 1 
HETATM 26 O O2N NAI . . . G 2 143.981 60.705 13.842 1 133.17 ? O2N NAI 603 C 1 
HETATM 27 O O5D NAI . . . G 2 146.488 61.32 13.477 1 154.48 ? O5D NAI 603 C 1 
HETATM 28 C C5D NAI . . . G 2 146.357 61.925 12.166 1 149.57 ? C5D NAI 603 C 1 
HETATM 29 C C4D NAI . . . G 2 146.689 60.89 11.107 1 147 ? C4D NAI 603 C 1 
HETATM 30 O O4D NAI . . . G 2 147.951 60.234 11.452 1 158.14 ? O4D NAI 603 C 1 
HETATM 31 C C3D NAI . . . G 2 145.62 59.801 10.943 1 146.09 ? C3D NAI 603 C 1 
HETATM 32 O O3D NAI . . . G 2 145.114 59.648 9.602 1 124.56 ? O3D NAI 603 C 1 
HETATM 33 C C2D NAI . . . G 2 146.326 58.547 11.494 1 155.25 ? C2D NAI 603 C 1 
HETATM 34 O O2D NAI . . . G 2 145.814 57.356 10.848 1 150.4 ? O2D NAI 603 C 1 
HETATM 35 C C1D NAI . . . G 2 147.789 58.857 11.213 1 165.4 ? C1D NAI 603 C 1 
HETATM 36 N N1N NAI . . . G 2 148.755 58.069 12.05 1 170.44 ? N1N NAI 603 C 1 
HETATM 37 C C2N NAI . . . G 2 148.848 58.442 13.399 1 166.82 ? C2N NAI 603 C 1 
HETATM 38 C C3N NAI . . . G 2 149.744 57.716 14.187 1 159.26 ? C3N NAI 603 C 1 
HETATM 39 C C7N NAI . . . G 2 149.945 58.014 15.673 1 155.68 ? C7N NAI 603 C 1 
HETATM 40 O O7N NAI . . . G 2 150.746 57.34 16.306 1 149.08 ? O7N NAI 603 C 1 
HETATM 41 N N7N NAI . . . G 2 149.246 59.001 16.257 1 143.4 ? N7N NAI 603 C 1 
HETATM 42 C C4N NAI . . . G 2 150.541 56.625 13.633 1 157.85 ? C4N NAI 603 C 1 
HETATM 43 C C5N NAI . . . G 2 150.343 56.357 12.249 1 159.9 ? C5N NAI 603 C 1 
HETATM 44 C C6N NAI . . . G 2 149.482 57.026 11.411 1 163.39 ? C6N NAI 603 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#