data_2HMS
#
_model_server_result.job_id            XqgdKfPsz6i6XkfC2fgauw 
_model_server_result.datetime_utc      '2024-11-16 13:29:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hms 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":604}' 
#
_entry.id    2HMS 
#
_exptl.entry_id    2HMS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2HMS 
_cell.length_a            164.881 
_cell.length_b            164.881 
_cell.length_c            57.24 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HMS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        151 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 1 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_755 -x+y+2,y,-z+1/3 -1 0 0 0 1 0 0 0 -1 329.762 0 19.08 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 237 n n 
PA O2A NAI sing 238 n n 
PA O5B NAI sing 239 n n 
PA O3 NAI sing 240 n n 
O2A HOA2 NAI sing 241 n n 
O5B C5B NAI sing 242 n n 
C5B C4B NAI sing 243 n n 
C5B H51A NAI sing 244 n n 
C5B H52A NAI sing 245 n n 
C4B O4B NAI sing 246 n n 
C4B C3B NAI sing 247 n n 
C4B H4B NAI sing 248 n n 
O4B C1B NAI sing 249 n n 
C3B O3B NAI sing 250 n n 
C3B C2B NAI sing 251 n n 
C3B H3B NAI sing 252 n n 
O3B HO3A NAI sing 253 n n 
C2B O2B NAI sing 254 n n 
C2B C1B NAI sing 255 n n 
C2B H2B NAI sing 256 n n 
O2B HO2A NAI sing 257 n n 
C1B N9A NAI sing 258 n n 
C1B H1B NAI sing 259 n n 
N9A C8A NAI sing 260 n y 
N9A C4A NAI sing 261 n y 
C8A N7A NAI doub 262 n y 
C8A H8A NAI sing 263 n n 
N7A C5A NAI sing 264 n y 
C5A C6A NAI sing 265 n y 
C5A C4A NAI doub 266 n y 
C6A N6A NAI sing 267 n n 
C6A N1A NAI doub 268 n y 
N6A H61A NAI sing 269 n n 
N6A H62A NAI sing 270 n n 
N1A C2A NAI sing 271 n y 
C2A N3A NAI doub 272 n y 
C2A H2A NAI sing 273 n n 
N3A C4A NAI sing 274 n y 
O3 PN NAI sing 275 n n 
PN O1N NAI sing 276 n n 
PN O2N NAI doub 277 n n 
PN O5D NAI sing 278 n n 
O1N HO1N NAI sing 279 n n 
O5D C5D NAI sing 280 n n 
C5D C4D NAI sing 281 n n 
C5D H51N NAI sing 282 n n 
C5D H52N NAI sing 283 n n 
C4D O4D NAI sing 284 n n 
C4D C3D NAI sing 285 n n 
C4D H4D NAI sing 286 n n 
O4D C1D NAI sing 287 n n 
C3D O3D NAI sing 288 n n 
C3D C2D NAI sing 289 n n 
C3D H3D NAI sing 290 n n 
O3D HO3N NAI sing 291 n n 
C2D O2D NAI sing 292 n n 
C2D C1D NAI sing 293 n n 
C2D H2D NAI sing 294 n n 
O2D HO2N NAI sing 295 n n 
C1D N1N NAI sing 296 n n 
C1D H1D NAI sing 297 n n 
N1N C2N NAI sing 298 n n 
N1N C6N NAI sing 299 n n 
C2N C3N NAI doub 300 n n 
C2N H2N NAI sing 301 n n 
C3N C7N NAI sing 302 n n 
C3N C4N NAI sing 303 n n 
C7N O7N NAI doub 304 n n 
C7N N7N NAI sing 305 n n 
N7N H71N NAI sing 306 n n 
N7N H72N NAI sing 307 n n 
C4N C5N NAI sing 308 n n 
C4N H4N NAI sing 309 n n 
C4N H42N NAI sing 310 n n 
C5N C6N NAI doub 311 n n 
C5N H5N NAI sing 312 n n 
C6N H6N NAI sing 313 n n 
#
_atom_sites.entry_id                     2HMS 
_atom_sites.fract_transf_matrix[1][1]    0.006065 
_atom_sites.fract_transf_matrix[1][2]    0.003502 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007003 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAI A 1 601 601 NAI NAI . 
F 2 NAI B 1 602 602 NAI NAI . 
G 2 NAI C 1 603 603 NAI NAI . 
H 2 NAI D 1 604 604 NAI NAI . 
I 3 HOH A 1 602 5 HOH HOH . 
I 3 HOH A 2 603 6 HOH HOH . 
I 3 HOH A 3 604 7 HOH HOH . 
I 3 HOH A 4 605 9 HOH HOH . 
I 3 HOH A 5 606 11 HOH HOH . 
I 3 HOH A 6 607 26 HOH HOH . 
J 3 HOH B 1 603 1 HOH HOH . 
J 3 HOH B 2 604 2 HOH HOH . 
J 3 HOH B 3 605 8 HOH HOH . 
J 3 HOH B 4 606 13 HOH HOH . 
J 3 HOH B 5 607 16 HOH HOH . 
J 3 HOH B 6 608 17 HOH HOH . 
J 3 HOH B 7 609 21 HOH HOH . 
J 3 HOH B 8 610 22 HOH HOH . 
K 3 HOH C 1 604 10 HOH HOH . 
K 3 HOH C 2 605 19 HOH HOH . 
K 3 HOH C 3 606 20 HOH HOH . 
K 3 HOH C 4 607 24 HOH HOH . 
K 3 HOH C 5 608 27 HOH HOH . 
L 3 HOH D 1 605 3 HOH HOH . 
L 3 HOH D 2 606 4 HOH HOH . 
L 3 HOH D 3 607 12 HOH HOH . 
L 3 HOH D 4 608 14 HOH HOH . 
L 3 HOH D 5 609 15 HOH HOH . 
L 3 HOH D 6 610 18 HOH HOH . 
L 3 HOH D 7 611 23 HOH HOH . 
L 3 HOH D 8 612 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . H 2 152.883 59.721 2.398 1 87.39 ? PA NAI 604 D 1 
HETATM 2 O O1A NAI . . . H 2 153.886 60.199 3.364 1 87.3 ? O1A NAI 604 D 1 
HETATM 3 O O2A NAI . . . H 2 153.179 58.357 1.91 1 82.58 ? O2A NAI 604 D 1 
HETATM 4 O O5B NAI . . . H 2 152.775 60.607 1.067 1 77.4 ? O5B NAI 604 D 1 
HETATM 5 C C5B NAI . . . H 2 153.815 61.549 0.694 1 76.59 ? C5B NAI 604 D 1 
HETATM 6 C C4B NAI . . . H 2 154.121 61.386 -0.764 1 70.34 ? C4B NAI 604 D 1 
HETATM 7 O O4B NAI . . . H 2 155.409 62.035 -0.971 1 78.4 ? O4B NAI 604 D 1 
HETATM 8 C C3B NAI . . . H 2 154.311 59.931 -1.236 1 63.09 ? C3B NAI 604 D 1 
HETATM 9 O O3B NAI . . . H 2 153.473 59.611 -2.358 1 77.11 ? O3B NAI 604 D 1 
HETATM 10 C C2B NAI . . . H 2 155.821 59.845 -1.502 1 60.65 ? C2B NAI 604 D 1 
HETATM 11 O O2B NAI . . . H 2 156.126 58.935 -2.584 1 78.28 ? O2B NAI 604 D 1 
HETATM 12 C C1B NAI . . . H 2 156.204 61.274 -1.823 1 68.83 ? C1B NAI 604 D 1 
HETATM 13 N N9A NAI . . . H 2 157.606 61.55 -1.508 1 66.73 ? N9A NAI 604 D 1 
HETATM 14 C C8A NAI . . . H 2 158.303 61.305 -0.336 1 55.01 ? C8A NAI 604 D 1 
HETATM 15 N N7A NAI . . . H 2 159.608 61.692 -0.378 1 60.98 ? N7A NAI 604 D 1 
HETATM 16 C C5A NAI . . . H 2 159.728 62.217 -1.673 1 54.83 ? C5A NAI 604 D 1 
HETATM 17 C C6A NAI . . . H 2 160.849 62.803 -2.373 1 55.71 ? C6A NAI 604 D 1 
HETATM 18 N N6A NAI . . . H 2 162.059 62.943 -1.83 1 75.51 ? N6A NAI 604 D 1 
HETATM 19 N N1A NAI . . . H 2 160.612 63.23 -3.674 1 68.23 ? N1A NAI 604 D 1 
HETATM 20 C C2A NAI . . . H 2 159.35 63.084 -4.235 1 72.53 ? C2A NAI 604 D 1 
HETATM 21 N N3A NAI . . . H 2 158.271 62.561 -3.672 1 59.46 ? N3A NAI 604 D 1 
HETATM 22 C C4A NAI . . . H 2 158.508 62.14 -2.387 1 56.46 ? C4A NAI 604 D 1 
HETATM 23 O O3 NAI . . . H 2 151.454 59.843 3.006 1 104.86 ? O3 NAI 604 D 1 
HETATM 24 P PN NAI . . . H 2 150.228 60.853 2.776 1 135.71 ? PN NAI 604 D 1 
HETATM 25 O O1N NAI . . . H 2 149.227 60.148 1.916 1 121.55 ? O1N NAI 604 D 1 
HETATM 26 O O2N NAI . . . H 2 150.779 62.086 2.176 1 130.52 ? O2N NAI 604 D 1 
HETATM 27 O O5D NAI . . . H 2 149.614 61.04 4.236 1 142.05 ? O5D NAI 604 D 1 
HETATM 28 C C5D NAI . . . H 2 150.481 61.471 5.313 1 142.77 ? C5D NAI 604 D 1 
HETATM 29 C C4D NAI . . . H 2 149.838 61.07 6.619 1 149.17 ? C4D NAI 604 D 1 
HETATM 30 O O4D NAI . . . H 2 149.279 59.726 6.471 1 162.19 ? O4D NAI 604 D 1 
HETATM 31 C C3D NAI . . . H 2 150.81 61.054 7.8 1 148.55 ? C3D NAI 604 D 1 
HETATM 32 O O3D NAI . . . H 2 150.389 61.856 8.92 1 137.47 ? O3D NAI 604 D 1 
HETATM 33 C C2D NAI . . . H 2 150.944 59.542 8.113 1 153.23 ? C2D NAI 604 D 1 
HETATM 34 O O2D NAI . . . H 2 151.213 59.325 9.523 1 137.51 ? O2D NAI 604 D 1 
HETATM 35 C C1D NAI . . . H 2 149.612 58.987 7.615 1 160.12 ? C1D NAI 604 D 1 
HETATM 36 N N1N NAI . . . H 2 149.613 57.525 7.268 1 159.31 ? N1N NAI 604 D 1 
HETATM 37 C C2N NAI . . . H 2 150.6 57.106 6.36 1 159.4 ? C2N NAI 604 D 1 
HETATM 38 C C3N NAI . . . H 2 150.609 55.75 6.03 1 157.72 ? C3N NAI 604 D 1 
HETATM 39 C C7N NAI . . . H 2 151.63 55.162 5.054 1 155.3 ? C7N NAI 604 D 1 
HETATM 40 O O7N NAI . . . H 2 151.588 53.964 4.805 1 137.34 ? O7N NAI 604 D 1 
HETATM 41 N N7N NAI . . . H 2 152.55 55.959 4.49 1 150.5 ? N7N NAI 604 D 1 
HETATM 42 C C4N NAI . . . H 2 149.638 54.817 6.598 1 155.74 ? C4N NAI 604 D 1 
HETATM 43 C C5N NAI . . . H 2 148.694 55.385 7.505 1 146.33 ? C5N NAI 604 D 1 
HETATM 44 C C6N NAI . . . H 2 148.623 56.705 7.879 1 147.93 ? C6N NAI 604 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           388 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#