data_2HMT # _model_server_result.job_id 0Nq98PqrWPkunh_kg_HE0g _model_server_result.datetime_utc '2024-11-16 13:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 2HMT # _exptl.entry_id 2HMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HMT _cell.length_a 127.405 _cell.length_b 127.405 _cell.length_c 50.867 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 254.81 127.405 0 3 'crystal symmetry operation' 5_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 254.81 0 50.867 4 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 127.405 50.867 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 2HMT _atom_sites.fract_transf_matrix[1][1] 0.007849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 601 601 NAI NAI . D 2 NAI B 1 602 602 NAI NAI . E 3 HOH A 1 602 1 HOH HOH . E 3 HOH A 2 603 2 HOH HOH . E 3 HOH A 3 604 3 HOH HOH . E 3 HOH A 4 605 4 HOH HOH . E 3 HOH A 5 606 5 HOH HOH . E 3 HOH A 6 607 6 HOH HOH . E 3 HOH A 7 608 7 HOH HOH . E 3 HOH A 8 609 8 HOH HOH . E 3 HOH A 9 610 10 HOH HOH . E 3 HOH A 10 611 11 HOH HOH . E 3 HOH A 11 612 12 HOH HOH . E 3 HOH A 12 613 13 HOH HOH . E 3 HOH A 13 614 14 HOH HOH . E 3 HOH A 14 615 15 HOH HOH . E 3 HOH A 15 616 17 HOH HOH . E 3 HOH A 16 617 19 HOH HOH . E 3 HOH A 17 618 20 HOH HOH . E 3 HOH A 18 619 21 HOH HOH . E 3 HOH A 19 620 24 HOH HOH . E 3 HOH A 20 621 25 HOH HOH . E 3 HOH A 21 622 26 HOH HOH . E 3 HOH A 22 623 30 HOH HOH . E 3 HOH A 23 624 31 HOH HOH . E 3 HOH A 24 625 33 HOH HOH . E 3 HOH A 25 626 34 HOH HOH . E 3 HOH A 26 627 35 HOH HOH . E 3 HOH A 27 628 36 HOH HOH . E 3 HOH A 28 629 37 HOH HOH . E 3 HOH A 29 630 38 HOH HOH . E 3 HOH A 30 631 39 HOH HOH . E 3 HOH A 31 632 40 HOH HOH . E 3 HOH A 32 633 41 HOH HOH . E 3 HOH A 33 634 42 HOH HOH . E 3 HOH A 34 635 43 HOH HOH . E 3 HOH A 35 636 44 HOH HOH . E 3 HOH A 36 637 45 HOH HOH . E 3 HOH A 37 638 46 HOH HOH . E 3 HOH A 38 639 47 HOH HOH . E 3 HOH A 39 640 48 HOH HOH . E 3 HOH A 40 641 49 HOH HOH . E 3 HOH A 41 642 50 HOH HOH . E 3 HOH A 42 643 69 HOH HOH . E 3 HOH A 43 644 71 HOH HOH . E 3 HOH A 44 645 72 HOH HOH . E 3 HOH A 45 646 87 HOH HOH . E 3 HOH A 46 647 88 HOH HOH . E 3 HOH A 47 648 89 HOH HOH . E 3 HOH A 48 649 91 HOH HOH . E 3 HOH A 49 650 93 HOH HOH . E 3 HOH A 50 651 94 HOH HOH . E 3 HOH A 51 652 95 HOH HOH . E 3 HOH A 52 653 98 HOH HOH . E 3 HOH A 53 654 99 HOH HOH . E 3 HOH A 54 655 100 HOH HOH . E 3 HOH A 55 656 104 HOH HOH . E 3 HOH A 56 657 106 HOH HOH . E 3 HOH A 57 658 110 HOH HOH . E 3 HOH A 58 659 111 HOH HOH . E 3 HOH A 59 660 116 HOH HOH . E 3 HOH A 60 661 119 HOH HOH . E 3 HOH A 61 662 120 HOH HOH . E 3 HOH A 62 663 122 HOH HOH . E 3 HOH A 63 664 125 HOH HOH . E 3 HOH A 64 665 127 HOH HOH . E 3 HOH A 65 666 129 HOH HOH . E 3 HOH A 66 667 131 HOH HOH . E 3 HOH A 67 668 136 HOH HOH . E 3 HOH A 68 669 140 HOH HOH . E 3 HOH A 69 670 141 HOH HOH . E 3 HOH A 70 671 142 HOH HOH . E 3 HOH A 71 672 144 HOH HOH . E 3 HOH A 72 673 145 HOH HOH . E 3 HOH A 73 674 146 HOH HOH . E 3 HOH A 74 675 149 HOH HOH . E 3 HOH A 75 676 154 HOH HOH . E 3 HOH A 76 677 155 HOH HOH . E 3 HOH A 77 678 157 HOH HOH . E 3 HOH A 78 679 158 HOH HOH . E 3 HOH A 79 680 161 HOH HOH . E 3 HOH A 80 681 162 HOH HOH . E 3 HOH A 81 682 164 HOH HOH . E 3 HOH A 82 683 166 HOH HOH . E 3 HOH A 83 684 167 HOH HOH . E 3 HOH A 84 685 169 HOH HOH . E 3 HOH A 85 686 172 HOH HOH . E 3 HOH A 86 687 173 HOH HOH . F 3 HOH B 1 603 9 HOH HOH . F 3 HOH B 2 604 16 HOH HOH . F 3 HOH B 3 605 18 HOH HOH . F 3 HOH B 4 606 22 HOH HOH . F 3 HOH B 5 607 23 HOH HOH . F 3 HOH B 6 608 27 HOH HOH . F 3 HOH B 7 609 28 HOH HOH . F 3 HOH B 8 610 29 HOH HOH . F 3 HOH B 9 611 32 HOH HOH . F 3 HOH B 10 612 51 HOH HOH . F 3 HOH B 11 613 52 HOH HOH . F 3 HOH B 12 614 53 HOH HOH . F 3 HOH B 13 615 54 HOH HOH . F 3 HOH B 14 616 55 HOH HOH . F 3 HOH B 15 617 56 HOH HOH . F 3 HOH B 16 618 57 HOH HOH . F 3 HOH B 17 619 58 HOH HOH . F 3 HOH B 18 620 59 HOH HOH . F 3 HOH B 19 621 60 HOH HOH . F 3 HOH B 20 622 61 HOH HOH . F 3 HOH B 21 623 62 HOH HOH . F 3 HOH B 22 624 63 HOH HOH . F 3 HOH B 23 625 64 HOH HOH . F 3 HOH B 24 626 65 HOH HOH . F 3 HOH B 25 627 66 HOH HOH . F 3 HOH B 26 628 67 HOH HOH . F 3 HOH B 27 629 68 HOH HOH . F 3 HOH B 28 630 70 HOH HOH . F 3 HOH B 29 631 73 HOH HOH . F 3 HOH B 30 632 74 HOH HOH . F 3 HOH B 31 633 75 HOH HOH . F 3 HOH B 32 634 76 HOH HOH . F 3 HOH B 33 635 77 HOH HOH . F 3 HOH B 34 636 78 HOH HOH . F 3 HOH B 35 637 79 HOH HOH . F 3 HOH B 36 638 80 HOH HOH . F 3 HOH B 37 639 81 HOH HOH . F 3 HOH B 38 640 82 HOH HOH . F 3 HOH B 39 641 83 HOH HOH . F 3 HOH B 40 642 84 HOH HOH . F 3 HOH B 41 643 85 HOH HOH . F 3 HOH B 42 644 86 HOH HOH . F 3 HOH B 43 645 90 HOH HOH . F 3 HOH B 44 646 92 HOH HOH . F 3 HOH B 45 647 96 HOH HOH . F 3 HOH B 46 648 97 HOH HOH . F 3 HOH B 47 649 101 HOH HOH . F 3 HOH B 48 650 102 HOH HOH . F 3 HOH B 49 651 103 HOH HOH . F 3 HOH B 50 652 105 HOH HOH . F 3 HOH B 51 653 107 HOH HOH . F 3 HOH B 52 654 108 HOH HOH . F 3 HOH B 53 655 109 HOH HOH . F 3 HOH B 54 656 112 HOH HOH . F 3 HOH B 55 657 113 HOH HOH . F 3 HOH B 56 658 114 HOH HOH . F 3 HOH B 57 659 115 HOH HOH . F 3 HOH B 58 660 117 HOH HOH . F 3 HOH B 59 661 118 HOH HOH . F 3 HOH B 60 662 121 HOH HOH . F 3 HOH B 61 663 123 HOH HOH . F 3 HOH B 62 664 124 HOH HOH . F 3 HOH B 63 665 126 HOH HOH . F 3 HOH B 64 666 128 HOH HOH . F 3 HOH B 65 667 130 HOH HOH . F 3 HOH B 66 668 132 HOH HOH . F 3 HOH B 67 669 133 HOH HOH . F 3 HOH B 68 670 134 HOH HOH . F 3 HOH B 69 671 135 HOH HOH . F 3 HOH B 70 672 137 HOH HOH . F 3 HOH B 71 673 138 HOH HOH . F 3 HOH B 72 674 139 HOH HOH . F 3 HOH B 73 675 143 HOH HOH . F 3 HOH B 74 676 147 HOH HOH . F 3 HOH B 75 677 148 HOH HOH . F 3 HOH B 76 678 150 HOH HOH . F 3 HOH B 77 679 151 HOH HOH . F 3 HOH B 78 680 152 HOH HOH . F 3 HOH B 79 681 153 HOH HOH . F 3 HOH B 80 682 156 HOH HOH . F 3 HOH B 81 683 159 HOH HOH . F 3 HOH B 82 684 160 HOH HOH . F 3 HOH B 83 685 163 HOH HOH . F 3 HOH B 84 686 165 HOH HOH . F 3 HOH B 85 687 168 HOH HOH . F 3 HOH B 86 688 170 HOH HOH . F 3 HOH B 87 689 171 HOH HOH . F 3 HOH B 88 690 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . D 2 116.487 44.78 32.578 1 83.84 ? PA NAI 602 B 1 HETATM 2 O O1A NAI . . . D 2 116.784 44.442 31.19 1 86.51 ? O1A NAI 602 B 1 HETATM 3 O O2A NAI . . . D 2 117.673 45.263 33.292 1 86.33 ? O2A NAI 602 B 1 HETATM 4 O O5B NAI . . . D 2 115.948 43.555 33.459 1 75.37 ? O5B NAI 602 B 1 HETATM 5 C C5B NAI . . . D 2 116.777 42.418 33.794 1 57.97 ? C5B NAI 602 B 1 HETATM 6 C C4B NAI . . . D 2 116.806 42.246 35.282 1 47.94 ? C4B NAI 602 B 1 HETATM 7 O O4B NAI . . . D 2 117.796 41.204 35.536 1 43.56 ? O4B NAI 602 B 1 HETATM 8 C C3B NAI . . . D 2 117.299 43.478 36.075 1 45.3 ? C3B NAI 602 B 1 HETATM 9 O O3B NAI . . . D 2 116.391 43.843 37.116 1 43.36 ? O3B NAI 602 B 1 HETATM 10 C C2B NAI . . . D 2 118.695 43.053 36.55 1 41.31 ? C2B NAI 602 B 1 HETATM 11 O O2B NAI . . . D 2 119.058 43.623 37.827 1 42.19 ? O2B NAI 602 B 1 HETATM 12 C C1B NAI . . . D 2 118.598 41.549 36.62 1 40.74 ? C1B NAI 602 B 1 HETATM 13 N N9A NAI . . . D 2 119.918 40.926 36.477 1 36.19 ? N9A NAI 602 B 1 HETATM 14 C C8A NAI . . . D 2 120.962 41.266 35.637 1 35.4 ? C8A NAI 602 B 1 HETATM 15 N N7A NAI . . . D 2 122.06 40.466 35.765 1 35.27 ? N7A NAI 602 B 1 HETATM 16 C C5A NAI . . . D 2 121.67 39.57 36.756 1 34.12 ? C5A NAI 602 B 1 HETATM 17 C C6A NAI . . . D 2 122.357 38.457 37.372 1 32.64 ? C6A NAI 602 B 1 HETATM 18 N N6A NAI . . . D 2 123.593 38.107 37.053 1 35.35 ? N6A NAI 602 B 1 HETATM 19 N N1A NAI . . . D 2 121.661 37.751 38.357 1 31.21 ? N1A NAI 602 B 1 HETATM 20 C C2A NAI . . . D 2 120.371 38.135 38.688 1 32.92 ? C2A NAI 602 B 1 HETATM 21 N N3A NAI . . . D 2 119.663 39.137 38.18 1 33.91 ? N3A NAI 602 B 1 HETATM 22 C C4A NAI . . . D 2 120.352 39.825 37.21 1 35.36 ? C4A NAI 602 B 1 HETATM 23 O O3 NAI . . . D 2 115.298 45.786 32.626 1 96.1 ? O3 NAI 602 B 1 HETATM 24 P PN NAI . . . D 2 114.028 46.051 31.672 1 106.15 ? PN NAI 602 B 1 HETATM 25 O O1N NAI . . . D 2 112.93 46.572 32.54 1 105.72 ? O1N NAI 602 B 1 HETATM 26 O O2N NAI . . . D 2 113.718 44.773 31.004 1 106.53 ? O2N NAI 602 B 1 HETATM 27 O O5D NAI . . . D 2 114.513 47.214 30.689 1 110.25 ? O5D NAI 602 B 1 HETATM 28 C C5D NAI . . . D 2 113.792 47.401 29.446 1 116.8 ? C5D NAI 602 B 1 HETATM 29 C C4D NAI . . . D 2 114.669 48.13 28.446 1 121.01 ? C4D NAI 602 B 1 HETATM 30 O O4D NAI . . . D 2 114.909 49.485 28.897 1 123.04 ? O4D NAI 602 B 1 HETATM 31 C C3D NAI . . . D 2 116.05 47.526 28.218 1 122.86 ? C3D NAI 602 B 1 HETATM 32 O O3D NAI . . . D 2 116.082 46.426 27.288 1 123 ? O3D NAI 602 B 1 HETATM 33 C C2D NAI . . . D 2 116.884 48.765 27.786 1 124.09 ? C2D NAI 602 B 1 HETATM 34 O O2D NAI . . . D 2 117.272 48.65 26.392 1 124.6 ? O2D NAI 602 B 1 HETATM 35 C C1D NAI . . . D 2 115.956 49.959 28.087 1 124.82 ? C1D NAI 602 B 1 HETATM 36 N N1N NAI . . . D 2 116.635 51.123 28.753 1 126.11 ? N1N NAI 602 B 1 HETATM 37 C C2N NAI . . . D 2 117.136 50.89 30.046 1 126.8 ? C2N NAI 602 B 1 HETATM 38 C C3N NAI . . . D 2 117.769 51.965 30.675 1 127.13 ? C3N NAI 602 B 1 HETATM 39 C C7N NAI . . . D 2 118.362 51.848 32.084 1 127.56 ? C7N NAI 602 B 1 HETATM 40 O O7N NAI . . . D 2 118.904 52.829 32.579 1 127.8 ? O7N NAI 602 B 1 HETATM 41 N N7N NAI . . . D 2 118.28 50.686 32.753 1 127.72 ? N7N NAI 602 B 1 HETATM 42 C C4N NAI . . . D 2 117.902 53.264 30.021 1 126.61 ? C4N NAI 602 B 1 HETATM 43 C C5N NAI . . . D 2 117.346 53.357 28.71 1 126.58 ? C5N NAI 602 B 1 HETATM 44 C C6N NAI . . . D 2 116.71 52.347 28.025 1 126.45 ? C6N NAI 602 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 672 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #