data_2HMU # _model_server_result.job_id kz8uxypxTHc1adSFHoPUbQ _model_server_result.datetime_utc '2024-11-05 11:42:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hmu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 2HMU # _exptl.entry_id 2HMU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HMU _cell.length_a 127.668 _cell.length_b 127.668 _cell.length_c 51.88 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HMU _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 255.336 127.668 0 3 'crystal symmetry operation' 5_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 255.336 0 51.88 4 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 127.668 51.88 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2HMU _atom_sites.fract_transf_matrix[1][1] 0.007833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 601 601 ATP ATP . D 2 ATP B 1 602 602 ATP ATP . E 3 HOH A 1 602 1 HOH HOH . E 3 HOH A 2 603 2 HOH HOH . E 3 HOH A 3 604 5 HOH HOH . E 3 HOH A 4 605 7 HOH HOH . E 3 HOH A 5 606 8 HOH HOH . E 3 HOH A 6 607 13 HOH HOH . E 3 HOH A 7 608 14 HOH HOH . E 3 HOH A 8 609 15 HOH HOH . E 3 HOH A 9 610 16 HOH HOH . E 3 HOH A 10 611 17 HOH HOH . E 3 HOH A 11 612 19 HOH HOH . E 3 HOH A 12 613 20 HOH HOH . E 3 HOH A 13 614 21 HOH HOH . E 3 HOH A 14 615 22 HOH HOH . E 3 HOH A 15 616 25 HOH HOH . E 3 HOH A 16 617 26 HOH HOH . E 3 HOH A 17 618 27 HOH HOH . E 3 HOH A 18 619 28 HOH HOH . E 3 HOH A 19 620 29 HOH HOH . E 3 HOH A 20 621 30 HOH HOH . E 3 HOH A 21 622 33 HOH HOH . E 3 HOH A 22 623 34 HOH HOH . E 3 HOH A 23 624 35 HOH HOH . E 3 HOH A 24 625 37 HOH HOH . E 3 HOH A 25 626 38 HOH HOH . E 3 HOH A 26 627 42 HOH HOH . E 3 HOH A 27 628 44 HOH HOH . E 3 HOH A 28 629 45 HOH HOH . E 3 HOH A 29 630 46 HOH HOH . E 3 HOH A 30 631 52 HOH HOH . E 3 HOH A 31 632 61 HOH HOH . E 3 HOH A 32 633 62 HOH HOH . E 3 HOH A 33 634 64 HOH HOH . E 3 HOH A 34 635 65 HOH HOH . E 3 HOH A 35 636 68 HOH HOH . E 3 HOH A 36 637 69 HOH HOH . E 3 HOH A 37 638 70 HOH HOH . E 3 HOH A 38 639 71 HOH HOH . E 3 HOH A 39 640 72 HOH HOH . E 3 HOH A 40 641 73 HOH HOH . E 3 HOH A 41 642 74 HOH HOH . E 3 HOH A 42 643 75 HOH HOH . E 3 HOH A 43 644 77 HOH HOH . E 3 HOH A 44 645 78 HOH HOH . E 3 HOH A 45 646 79 HOH HOH . E 3 HOH A 46 647 80 HOH HOH . E 3 HOH A 47 648 81 HOH HOH . E 3 HOH A 48 649 82 HOH HOH . E 3 HOH A 49 650 83 HOH HOH . E 3 HOH A 50 651 84 HOH HOH . E 3 HOH A 51 652 86 HOH HOH . E 3 HOH A 52 653 88 HOH HOH . E 3 HOH A 53 654 91 HOH HOH . E 3 HOH A 54 655 92 HOH HOH . E 3 HOH A 55 656 96 HOH HOH . E 3 HOH A 56 657 100 HOH HOH . E 3 HOH A 57 658 101 HOH HOH . E 3 HOH A 58 659 102 HOH HOH . E 3 HOH A 59 660 103 HOH HOH . E 3 HOH A 60 661 105 HOH HOH . E 3 HOH A 61 662 106 HOH HOH . E 3 HOH A 62 663 108 HOH HOH . E 3 HOH A 63 664 111 HOH HOH . E 3 HOH A 64 665 113 HOH HOH . E 3 HOH A 65 666 115 HOH HOH . E 3 HOH A 66 667 117 HOH HOH . F 3 HOH B 1 603 3 HOH HOH . F 3 HOH B 2 604 4 HOH HOH . F 3 HOH B 3 605 6 HOH HOH . F 3 HOH B 4 606 9 HOH HOH . F 3 HOH B 5 607 10 HOH HOH . F 3 HOH B 6 608 11 HOH HOH . F 3 HOH B 7 609 12 HOH HOH . F 3 HOH B 8 610 18 HOH HOH . F 3 HOH B 9 611 23 HOH HOH . F 3 HOH B 10 612 24 HOH HOH . F 3 HOH B 11 613 31 HOH HOH . F 3 HOH B 12 614 32 HOH HOH . F 3 HOH B 13 615 36 HOH HOH . F 3 HOH B 14 616 39 HOH HOH . F 3 HOH B 15 617 40 HOH HOH . F 3 HOH B 16 618 41 HOH HOH . F 3 HOH B 17 619 43 HOH HOH . F 3 HOH B 18 620 47 HOH HOH . F 3 HOH B 19 621 48 HOH HOH . F 3 HOH B 20 622 49 HOH HOH . F 3 HOH B 21 623 50 HOH HOH . F 3 HOH B 22 624 51 HOH HOH . F 3 HOH B 23 625 53 HOH HOH . F 3 HOH B 24 626 54 HOH HOH . F 3 HOH B 25 627 55 HOH HOH . F 3 HOH B 26 628 56 HOH HOH . F 3 HOH B 27 629 57 HOH HOH . F 3 HOH B 28 630 58 HOH HOH . F 3 HOH B 29 631 59 HOH HOH . F 3 HOH B 30 632 60 HOH HOH . F 3 HOH B 31 633 63 HOH HOH . F 3 HOH B 32 634 66 HOH HOH . F 3 HOH B 33 635 67 HOH HOH . F 3 HOH B 34 636 76 HOH HOH . F 3 HOH B 35 637 85 HOH HOH . F 3 HOH B 36 638 87 HOH HOH . F 3 HOH B 37 639 89 HOH HOH . F 3 HOH B 38 640 90 HOH HOH . F 3 HOH B 39 641 93 HOH HOH . F 3 HOH B 40 642 94 HOH HOH . F 3 HOH B 41 643 95 HOH HOH . F 3 HOH B 42 644 97 HOH HOH . F 3 HOH B 43 645 98 HOH HOH . F 3 HOH B 44 646 99 HOH HOH . F 3 HOH B 45 647 104 HOH HOH . F 3 HOH B 46 648 107 HOH HOH . F 3 HOH B 47 649 109 HOH HOH . F 3 HOH B 48 650 110 HOH HOH . F 3 HOH B 49 651 112 HOH HOH . F 3 HOH B 50 652 114 HOH HOH . F 3 HOH B 51 653 116 HOH HOH . F 3 HOH B 52 654 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 113.174 46.157 30.573 1 160.83 ? PG ATP 602 B 1 HETATM 2 O O1G ATP . . . D 2 112.616 44.849 30.992 1 149.73 ? O1G ATP 602 B 1 HETATM 3 O O2G ATP . . . D 2 112.168 46.84 29.514 1 135.65 ? O2G ATP 602 B 1 HETATM 4 O O3G ATP . . . D 2 114.617 45.948 29.884 1 154.67 ? O3G ATP 602 B 1 HETATM 5 P PB ATP . . . D 2 114.602 46.706 32.757 1 143.24 ? PB ATP 602 B 1 HETATM 6 O O1B ATP . . . D 2 115.805 47.407 32.241 1 137.93 ? O1B ATP 602 B 1 HETATM 7 O O2B ATP . . . D 2 114.358 47.126 34.294 1 110.71 ? O2B ATP 602 B 1 HETATM 8 O O3B ATP . . . D 2 113.306 47.122 31.872 1 141.41 ? O3B ATP 602 B 1 HETATM 9 P PA ATP . . . D 2 116.265 44.683 33.315 1 73.04 ? PA ATP 602 B 1 HETATM 10 O O1A ATP . . . D 2 116.655 45.614 34.409 1 100.4 ? O1A ATP 602 B 1 HETATM 11 O O2A ATP . . . D 2 117.387 44.709 32.158 1 88.56 ? O2A ATP 602 B 1 HETATM 12 O O3A ATP . . . D 2 114.829 45.101 32.681 1 115.06 ? O3A ATP 602 B 1 HETATM 13 O O5' ATP . . . D 2 116.1 43.188 33.897 1 72.35 ? O5' ATP 602 B 1 HETATM 14 C C5' ATP . . . D 2 117.338 42.801 34.472 1 47.7 ? C5' ATP 602 B 1 HETATM 15 C C4' ATP . . . D 2 117.131 42.427 35.931 1 33.13 ? C4' ATP 602 B 1 HETATM 16 O O4' ATP . . . D 2 117.974 41.279 36.239 1 37.58 ? O4' ATP 602 B 1 HETATM 17 C C3' ATP . . . D 2 117.549 43.592 36.871 1 44.94 ? C3' ATP 602 B 1 HETATM 18 O O3' ATP . . . D 2 116.548 43.846 37.863 1 42.81 ? O3' ATP 602 B 1 HETATM 19 C C2' ATP . . . D 2 118.874 43.127 37.467 1 41.99 ? C2' ATP 602 B 1 HETATM 20 O O2' ATP . . . D 2 119.086 43.628 38.783 1 44.22 ? O2' ATP 602 B 1 HETATM 21 C C1' ATP . . . D 2 118.774 41.597 37.416 1 35.08 ? C1' ATP 602 B 1 HETATM 22 N N9 ATP . . . D 2 120.101 40.984 37.3 1 38.25 ? N9 ATP 602 B 1 HETATM 23 C C8 ATP . . . D 2 121.129 41.38 36.482 1 38.81 ? C8 ATP 602 B 1 HETATM 24 N N7 ATP . . . D 2 122.159 40.602 36.649 1 39.78 ? N7 ATP 602 B 1 HETATM 25 C C5 ATP . . . D 2 121.868 39.661 37.573 1 36.11 ? C5 ATP 602 B 1 HETATM 26 C C6 ATP . . . D 2 122.57 38.573 38.156 1 32.45 ? C6 ATP 602 B 1 HETATM 27 N N6 ATP . . . D 2 123.871 38.295 37.776 1 34.98 ? N6 ATP 602 B 1 HETATM 28 N N1 ATP . . . D 2 121.94 37.809 39.089 1 35.94 ? N1 ATP 602 B 1 HETATM 29 C C2 ATP . . . D 2 120.682 38.068 39.465 1 44.04 ? C2 ATP 602 B 1 HETATM 30 N N3 ATP . . . D 2 119.989 39.088 38.938 1 34.32 ? N3 ATP 602 B 1 HETATM 31 C C4 ATP . . . D 2 120.537 39.897 38.007 1 48.64 ? C4 ATP 602 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #