data_2HMV # _model_server_result.job_id 1PqlVHNNFzeXVvZCeXXFmg _model_server_result.datetime_utc '2024-11-16 13:43:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 2HMV # _exptl.entry_id 2HMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HMV _cell.length_a 127.464 _cell.length_b 127.464 _cell.length_c 51.401 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 254.928 127.464 0 3 'crystal symmetry operation' 5_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 254.928 0 51.401 4 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 127.464 51.401 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2HMV _atom_sites.fract_transf_matrix[1][1] 0.007845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 601 601 ADP ADP . D 2 ADP B 1 602 602 ADP ADP . E 3 HOH A 1 602 4 HOH HOH . E 3 HOH A 2 603 5 HOH HOH . E 3 HOH A 3 604 7 HOH HOH . E 3 HOH A 4 605 8 HOH HOH . E 3 HOH A 5 606 9 HOH HOH . E 3 HOH A 6 607 11 HOH HOH . E 3 HOH A 7 608 13 HOH HOH . E 3 HOH A 8 609 14 HOH HOH . E 3 HOH A 9 610 15 HOH HOH . E 3 HOH A 10 611 16 HOH HOH . E 3 HOH A 11 612 17 HOH HOH . E 3 HOH A 12 613 18 HOH HOH . E 3 HOH A 13 614 20 HOH HOH . E 3 HOH A 14 615 21 HOH HOH . E 3 HOH A 15 616 25 HOH HOH . E 3 HOH A 16 617 27 HOH HOH . E 3 HOH A 17 618 29 HOH HOH . E 3 HOH A 18 619 30 HOH HOH . E 3 HOH A 19 620 31 HOH HOH . E 3 HOH A 20 621 32 HOH HOH . E 3 HOH A 21 622 33 HOH HOH . E 3 HOH A 22 623 37 HOH HOH . E 3 HOH A 23 624 38 HOH HOH . E 3 HOH A 24 625 42 HOH HOH . E 3 HOH A 25 626 43 HOH HOH . E 3 HOH A 26 627 45 HOH HOH . E 3 HOH A 27 628 46 HOH HOH . E 3 HOH A 28 629 47 HOH HOH . E 3 HOH A 29 630 48 HOH HOH . E 3 HOH A 30 631 49 HOH HOH . E 3 HOH A 31 632 50 HOH HOH . E 3 HOH A 32 633 52 HOH HOH . E 3 HOH A 33 634 53 HOH HOH . E 3 HOH A 34 635 59 HOH HOH . E 3 HOH A 35 636 60 HOH HOH . E 3 HOH A 36 637 62 HOH HOH . E 3 HOH A 37 638 68 HOH HOH . E 3 HOH A 38 639 69 HOH HOH . E 3 HOH A 39 640 70 HOH HOH . E 3 HOH A 40 641 71 HOH HOH . E 3 HOH A 41 642 72 HOH HOH . E 3 HOH A 42 643 73 HOH HOH . E 3 HOH A 43 644 74 HOH HOH . E 3 HOH A 44 645 75 HOH HOH . E 3 HOH A 45 646 81 HOH HOH . E 3 HOH A 46 647 85 HOH HOH . E 3 HOH A 47 648 89 HOH HOH . E 3 HOH A 48 649 90 HOH HOH . E 3 HOH A 49 650 91 HOH HOH . E 3 HOH A 50 651 92 HOH HOH . E 3 HOH A 51 652 94 HOH HOH . E 3 HOH A 52 653 95 HOH HOH . E 3 HOH A 53 654 97 HOH HOH . E 3 HOH A 54 655 98 HOH HOH . E 3 HOH A 55 656 99 HOH HOH . E 3 HOH A 56 657 100 HOH HOH . E 3 HOH A 57 658 101 HOH HOH . E 3 HOH A 58 659 102 HOH HOH . E 3 HOH A 59 660 104 HOH HOH . E 3 HOH A 60 661 106 HOH HOH . E 3 HOH A 61 662 108 HOH HOH . E 3 HOH A 62 663 109 HOH HOH . E 3 HOH A 63 664 111 HOH HOH . E 3 HOH A 64 665 113 HOH HOH . E 3 HOH A 65 666 114 HOH HOH . E 3 HOH A 66 667 117 HOH HOH . E 3 HOH A 67 668 121 HOH HOH . E 3 HOH A 68 669 128 HOH HOH . E 3 HOH A 69 670 130 HOH HOH . E 3 HOH A 70 671 132 HOH HOH . F 3 HOH B 1 603 1 HOH HOH . F 3 HOH B 2 604 2 HOH HOH . F 3 HOH B 3 605 3 HOH HOH . F 3 HOH B 4 606 6 HOH HOH . F 3 HOH B 5 607 10 HOH HOH . F 3 HOH B 6 608 12 HOH HOH . F 3 HOH B 7 609 19 HOH HOH . F 3 HOH B 8 610 22 HOH HOH . F 3 HOH B 9 611 23 HOH HOH . F 3 HOH B 10 612 24 HOH HOH . F 3 HOH B 11 613 26 HOH HOH . F 3 HOH B 12 614 28 HOH HOH . F 3 HOH B 13 615 34 HOH HOH . F 3 HOH B 14 616 35 HOH HOH . F 3 HOH B 15 617 36 HOH HOH . F 3 HOH B 16 618 39 HOH HOH . F 3 HOH B 17 619 40 HOH HOH . F 3 HOH B 18 620 41 HOH HOH . F 3 HOH B 19 621 44 HOH HOH . F 3 HOH B 20 622 51 HOH HOH . F 3 HOH B 21 623 54 HOH HOH . F 3 HOH B 22 624 55 HOH HOH . F 3 HOH B 23 625 56 HOH HOH . F 3 HOH B 24 626 57 HOH HOH . F 3 HOH B 25 627 58 HOH HOH . F 3 HOH B 26 628 61 HOH HOH . F 3 HOH B 27 629 63 HOH HOH . F 3 HOH B 28 630 64 HOH HOH . F 3 HOH B 29 631 65 HOH HOH . F 3 HOH B 30 632 66 HOH HOH . F 3 HOH B 31 633 67 HOH HOH . F 3 HOH B 32 634 76 HOH HOH . F 3 HOH B 33 635 77 HOH HOH . F 3 HOH B 34 636 78 HOH HOH . F 3 HOH B 35 637 79 HOH HOH . F 3 HOH B 36 638 80 HOH HOH . F 3 HOH B 37 639 82 HOH HOH . F 3 HOH B 38 640 83 HOH HOH . F 3 HOH B 39 641 84 HOH HOH . F 3 HOH B 40 642 86 HOH HOH . F 3 HOH B 41 643 87 HOH HOH . F 3 HOH B 42 644 88 HOH HOH . F 3 HOH B 43 645 93 HOH HOH . F 3 HOH B 44 646 96 HOH HOH . F 3 HOH B 45 647 103 HOH HOH . F 3 HOH B 46 648 105 HOH HOH . F 3 HOH B 47 649 107 HOH HOH . F 3 HOH B 48 650 110 HOH HOH . F 3 HOH B 49 651 112 HOH HOH . F 3 HOH B 50 652 115 HOH HOH . F 3 HOH B 51 653 116 HOH HOH . F 3 HOH B 52 654 118 HOH HOH . F 3 HOH B 53 655 119 HOH HOH . F 3 HOH B 54 656 120 HOH HOH . F 3 HOH B 55 657 122 HOH HOH . F 3 HOH B 56 658 123 HOH HOH . F 3 HOH B 57 659 124 HOH HOH . F 3 HOH B 58 660 125 HOH HOH . F 3 HOH B 59 661 126 HOH HOH . F 3 HOH B 60 662 127 HOH HOH . F 3 HOH B 61 663 129 HOH HOH . F 3 HOH B 62 664 131 HOH HOH . F 3 HOH B 63 665 133 HOH HOH . F 3 HOH B 64 666 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 113.246 48.366 16.949 1 106.26 ? PB ADP 601 A 1 HETATM 2 O O1B ADP . . . C 2 114.238 48.989 17.861 1 107.6 ? O1B ADP 601 A 1 HETATM 3 O O2B ADP . . . C 2 112.336 47.316 17.772 1 80.53 ? O2B ADP 601 A 1 HETATM 4 O O3B ADP . . . C 2 114.02 47.576 15.778 1 90.34 ? O3B ADP 601 A 1 HETATM 5 P PA ADP . . . C 2 111.49 50.356 17.399 1 78.26 ? PA ADP 601 A 1 HETATM 6 O O1A ADP . . . C 2 111.108 49.49 18.539 1 96.22 ? O1A ADP 601 A 1 HETATM 7 O O2A ADP . . . C 2 112.417 51.567 17.937 1 71.26 ? O2A ADP 601 A 1 HETATM 8 O O3A ADP . . . C 2 112.311 49.515 16.273 1 101.12 ? O3A ADP 601 A 1 HETATM 9 O O5' ADP . . . C 2 110.116 50.912 16.729 1 74.83 ? O5' ADP 601 A 1 HETATM 10 C C5' ADP . . . C 2 110.394 52.111 16.013 1 53.09 ? C5' ADP 601 A 1 HETATM 11 C C4' ADP . . . C 2 109.965 51.98 14.547 1 53.02 ? C4' ADP 601 A 1 HETATM 12 O O4' ADP . . . C 2 108.96 52.999 14.219 1 42.48 ? O4' ADP 601 A 1 HETATM 13 C C3' ADP . . . C 2 111.17 52.206 13.597 1 45.29 ? C3' ADP 601 A 1 HETATM 14 O O3' ADP . . . C 2 111.127 51.282 12.501 1 54.1 ? O3' ADP 601 A 1 HETATM 15 C C2' ADP . . . C 2 110.999 53.664 13.167 1 43.44 ? C2' ADP 601 A 1 HETATM 16 O O2' ADP . . . C 2 111.625 53.943 11.917 1 46.02 ? O2' ADP 601 A 1 HETATM 17 C C1' ADP . . . C 2 109.477 53.825 13.13 1 48.19 ? C1' ADP 601 A 1 HETATM 18 N N9 ADP . . . C 2 109.094 55.236 13.307 1 46.26 ? N9 ADP 601 A 1 HETATM 19 C C8 ADP . . . C 2 109.603 56.137 14.217 1 39 ? C8 ADP 601 A 1 HETATM 20 N N7 ADP . . . C 2 109.023 57.292 14.078 1 44.69 ? N7 ADP 601 A 1 HETATM 21 C C5 ADP . . . C 2 108.108 57.217 13.082 1 36.63 ? C5 ADP 601 A 1 HETATM 22 C C6 ADP . . . C 2 107.192 58.126 12.481 1 44.36 ? C6 ADP 601 A 1 HETATM 23 N N6 ADP . . . C 2 107.102 59.435 12.928 1 64.13 ? N6 ADP 601 A 1 HETATM 24 N N1 ADP . . . C 2 106.405 57.684 11.467 1 42.67 ? N1 ADP 601 A 1 HETATM 25 C C2 ADP . . . C 2 106.476 56.419 11.021 1 43.8 ? C2 ADP 601 A 1 HETATM 26 N N3 ADP . . . C 2 107.328 55.533 11.558 1 41.76 ? N3 ADP 601 A 1 HETATM 27 C C4 ADP . . . C 2 108.149 55.888 12.571 1 39.57 ? C4 ADP 601 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #