data_2HMW # _model_server_result.job_id DaTUG35jlfisvinbLGdcYw _model_server_result.datetime_utc '2024-11-05 09:25:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 2HMW # _exptl.entry_id 2HMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HMW _cell.length_a 126.28 _cell.length_b 126.28 _cell.length_c 98.612 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 126.28 126.28 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 126.28 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 126.28 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2HMW _atom_sites.fract_transf_matrix[1][1] 0.007919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 601 601 ATP ATP . D 2 ATP B 1 602 602 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 49.539 44.97 32.336 1 195.65 ? PG ATP 602 B 1 HETATM 2 O O1G ATP . . . D 2 50.163 43.643 32.581 1 195.52 ? O1G ATP 602 B 1 HETATM 3 O O2G ATP . . . D 2 47.972 44.748 32.048 1 194.67 ? O2G ATP 602 B 1 HETATM 4 O O3G ATP . . . D 2 50.202 45.681 31.053 1 195.65 ? O3G ATP 602 B 1 HETATM 5 P PB ATP . . . D 2 51.247 46.264 33.985 1 194.14 ? PB ATP 602 B 1 HETATM 6 O O1B ATP . . . D 2 51.881 46.963 32.843 1 191.09 ? O1B ATP 602 B 1 HETATM 7 O O2B ATP . . . D 2 51.318 47.248 35.262 1 191.81 ? O2B ATP 602 B 1 HETATM 8 O O3B ATP . . . D 2 49.688 45.924 33.656 1 194.71 ? O3B ATP 602 B 1 HETATM 9 P PA ATP . . . D 2 53.387 44.715 33.516 1 176.2 ? PA ATP 602 B 1 HETATM 10 O O1A ATP . . . D 2 54.299 45.864 33.773 1 177.66 ? O1A ATP 602 B 1 HETATM 11 O O2A ATP . . . D 2 53.041 44.651 31.945 1 179.75 ? O2A ATP 602 B 1 HETATM 12 O O3A ATP . . . D 2 52.021 44.884 34.364 1 186.59 ? O3A ATP 602 B 1 HETATM 13 O O5' ATP . . . D 2 54.075 43.312 33.932 1 159.5 ? O5' ATP 602 B 1 HETATM 14 C C5' ATP . . . D 2 54.86 43.505 35.105 1 135.77 ? C5' ATP 602 B 1 HETATM 15 C C4' ATP . . . D 2 54.173 42.864 36.318 1 119.72 ? C4' ATP 602 B 1 HETATM 16 O O4' ATP . . . D 2 54.878 41.662 36.75 1 113.76 ? O4' ATP 602 B 1 HETATM 17 C C3' ATP . . . D 2 54.165 43.811 37.52 1 120.36 ? C3' ATP 602 B 1 HETATM 18 O O3' ATP . . . D 2 53.009 43.561 38.334 1 120.06 ? O3' ATP 602 B 1 HETATM 19 C C2' ATP . . . D 2 55.478 43.481 38.214 1 116.44 ? C2' ATP 602 B 1 HETATM 20 O O2' ATP . . . D 2 55.443 43.894 39.58 1 122.3 ? O2' ATP 602 B 1 HETATM 21 C C1' ATP . . . D 2 55.589 41.949 37.992 1 113.21 ? C1' ATP 602 B 1 HETATM 22 N N9 ATP . . . D 2 56.993 41.516 37.87 1 107.58 ? N9 ATP 602 B 1 HETATM 23 C C8 ATP . . . D 2 57.982 42.116 37.127 1 106.95 ? C8 ATP 602 B 1 HETATM 24 N N7 ATP . . . D 2 59.106 41.462 37.257 1 104.85 ? N7 ATP 602 B 1 HETATM 25 C C5 ATP . . . D 2 58.927 40.403 38.091 1 98.17 ? C5 ATP 602 B 1 HETATM 26 C C6 ATP . . . D 2 59.769 39.348 38.607 1 93.38 ? C6 ATP 602 B 1 HETATM 27 N N6 ATP . . . D 2 61.119 39.265 38.26 1 83.38 ? N6 ATP 602 B 1 HETATM 28 N N1 ATP . . . D 2 59.217 38.434 39.445 1 88.04 ? N1 ATP 602 B 1 HETATM 29 C C2 ATP . . . D 2 57.915 38.499 39.792 1 90.97 ? C2 ATP 602 B 1 HETATM 30 N N3 ATP . . . D 2 57.103 39.466 39.333 1 90.57 ? N3 ATP 602 B 1 HETATM 31 C C4 ATP . . . D 2 57.558 40.425 38.494 1 98.61 ? C4 ATP 602 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #