data_2HND # _model_server_result.job_id vP6SsqzM-Nuf3WKTy4cyTQ _model_server_result.datetime_utc '2024-11-28 18:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":999}' # _entry.id 2HND # _exptl.entry_id 2HND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HND _cell.length_a 138.9 _cell.length_b 114.9 _cell.length_c 65.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HND _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 276 A LEU 279 1_555 A N CSD 277 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSD 277 A CSD 280 1_555 A N LYS 278 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD2 ASP 440 A ASP 443 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA NVP sing 252 n n N1 C2 NVP sing 253 n n N1 C15 NVP sing 254 n n CA CB NVP sing 255 n n CA CC NVP sing 256 n n CA HCA NVP sing 257 n n CB CC NVP sing 258 n n CB HCB1 NVP sing 259 n n CB HCB2 NVP sing 260 n n CC HCC1 NVP sing 261 n n CC HCC2 NVP sing 262 n n N3 C4 NVP doub 263 n y N3 C2 NVP sing 264 n y C4 C5 NVP sing 265 n y C4 HC4 NVP sing 266 n n C5 C6 NVP doub 267 n y C5 HC5 NVP sing 268 n n C6 CD NVP sing 269 n n C6 C7 NVP sing 270 n y CD HCD1 NVP sing 271 n n CD HCD2 NVP sing 272 n n CD HCD3 NVP sing 273 n n C2 C7 NVP doub 274 n y C7 N8 NVP sing 275 n n N8 C9 NVP sing 276 n n N8 HN8 NVP sing 277 n n C9 OE NVP doub 278 n n C9 C10 NVP sing 279 n n C10 C15 NVP doub 280 n y C10 C11 NVP sing 281 n y C15 N14 NVP sing 282 n y C11 C12 NVP doub 283 n y C11 H11 NVP sing 284 n n C12 C13 NVP sing 285 n y C12 H12 NVP sing 286 n n C13 N14 NVP doub 287 n y C13 H13 NVP sing 288 n n # _atom_sites.entry_id 2HND _atom_sites.fract_transf_matrix[1][1] 0.007199 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 1300 1300 PO4 PO4 . D 3 PO4 A 1 1301 1301 PO4 PO4 . E 3 PO4 A 1 1302 1302 PO4 PO4 . F 4 MG A 1 1303 1303 MG MG . G 5 NVP A 1 999 999 NVP NVP . H 6 HOH A 1 1001 1001 HOH HOH . H 6 HOH A 2 1005 1005 HOH HOH . H 6 HOH A 3 1006 1006 HOH HOH . H 6 HOH A 4 1008 1008 HOH HOH . H 6 HOH A 5 1009 1009 HOH HOH . H 6 HOH A 6 1010 1010 HOH HOH . H 6 HOH A 7 1011 1011 HOH HOH . H 6 HOH A 8 1012 1012 HOH HOH . H 6 HOH A 9 1014 1014 HOH HOH . H 6 HOH A 10 1015 1015 HOH HOH . H 6 HOH A 11 1016 1016 HOH HOH . H 6 HOH A 12 1017 1017 HOH HOH . H 6 HOH A 13 1018 1018 HOH HOH . H 6 HOH A 14 1019 1019 HOH HOH . H 6 HOH A 15 1020 1020 HOH HOH . H 6 HOH A 16 1021 1021 HOH HOH . H 6 HOH A 17 1022 1022 HOH HOH . H 6 HOH A 18 1023 1023 HOH HOH . H 6 HOH A 19 1024 1024 HOH HOH . H 6 HOH A 20 1025 1025 HOH HOH . H 6 HOH A 21 1026 1026 HOH HOH . H 6 HOH A 22 1027 1027 HOH HOH . H 6 HOH A 23 1028 1028 HOH HOH . H 6 HOH A 24 1029 1029 HOH HOH . H 6 HOH A 25 1030 1030 HOH HOH . H 6 HOH A 26 1031 1031 HOH HOH . H 6 HOH A 27 1032 1032 HOH HOH . H 6 HOH A 28 1033 1033 HOH HOH . H 6 HOH A 29 1034 1034 HOH HOH . H 6 HOH A 30 1035 1035 HOH HOH . H 6 HOH A 31 1036 1036 HOH HOH . H 6 HOH A 32 1037 1037 HOH HOH . H 6 HOH A 33 1038 1038 HOH HOH . H 6 HOH A 34 1039 1039 HOH HOH . H 6 HOH A 35 1040 1040 HOH HOH . H 6 HOH A 36 1041 1041 HOH HOH . H 6 HOH A 37 1042 1042 HOH HOH . H 6 HOH A 38 1043 1043 HOH HOH . H 6 HOH A 39 1044 1044 HOH HOH . H 6 HOH A 40 1054 1054 HOH HOH . H 6 HOH A 41 1064 1064 HOH HOH . H 6 HOH A 42 1066 1066 HOH HOH . H 6 HOH A 43 1067 1067 HOH HOH . H 6 HOH A 44 1068 1068 HOH HOH . H 6 HOH A 45 1069 1069 HOH HOH . H 6 HOH A 46 1070 1070 HOH HOH . H 6 HOH A 47 1071 1071 HOH HOH . H 6 HOH A 48 1072 1072 HOH HOH . H 6 HOH A 49 1073 1073 HOH HOH . H 6 HOH A 50 1074 1074 HOH HOH . H 6 HOH A 51 1075 1075 HOH HOH . H 6 HOH A 52 1079 1079 HOH HOH . I 6 HOH B 1 1002 1002 HOH HOH . I 6 HOH B 2 1003 1003 HOH HOH . I 6 HOH B 3 1004 1004 HOH HOH . I 6 HOH B 4 1007 1007 HOH HOH . I 6 HOH B 5 1013 1013 HOH HOH . I 6 HOH B 6 1045 1045 HOH HOH . I 6 HOH B 7 1046 1046 HOH HOH . I 6 HOH B 8 1047 1047 HOH HOH . I 6 HOH B 9 1048 1048 HOH HOH . I 6 HOH B 10 1049 1049 HOH HOH . I 6 HOH B 11 1050 1050 HOH HOH . I 6 HOH B 12 1051 1051 HOH HOH . I 6 HOH B 13 1052 1052 HOH HOH . I 6 HOH B 14 1053 1053 HOH HOH . I 6 HOH B 15 1055 1055 HOH HOH . I 6 HOH B 16 1056 1056 HOH HOH . I 6 HOH B 17 1057 1057 HOH HOH . I 6 HOH B 18 1058 1058 HOH HOH . I 6 HOH B 19 1059 1059 HOH HOH . I 6 HOH B 20 1060 1060 HOH HOH . I 6 HOH B 21 1061 1061 HOH HOH . I 6 HOH B 22 1062 1062 HOH HOH . I 6 HOH B 23 1063 1063 HOH HOH . I 6 HOH B 24 1065 1065 HOH HOH . I 6 HOH B 25 1076 1076 HOH HOH . I 6 HOH B 26 1077 1077 HOH HOH . I 6 HOH B 27 1078 1078 HOH HOH . I 6 HOH B 28 1080 1080 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . G 5 2.055 -37.558 21.225 1 36.95 ? N1 NVP 999 A 1 HETATM 2 C CA NVP . . . G 5 2.674 -38.736 20.553 1 30.52 ? CA NVP 999 A 1 HETATM 3 C CB NVP . . . G 5 3.018 -39.889 21.425 1 23.25 ? CB NVP 999 A 1 HETATM 4 C CC NVP . . . G 5 1.867 -39.982 20.486 1 31.25 ? CC NVP 999 A 1 HETATM 5 N N3 NVP . . . G 5 4.272 -36.599 21.453 1 37.74 ? N3 NVP 999 A 1 HETATM 6 C C4 NVP . . . G 5 5.179 -35.898 22.185 1 24.85 ? C4 NVP 999 A 1 HETATM 7 C C5 NVP . . . G 5 4.829 -35.259 23.392 1 31.91 ? C5 NVP 999 A 1 HETATM 8 C C6 NVP . . . G 5 3.509 -35.346 23.844 1 38.17 ? C6 NVP 999 A 1 HETATM 9 C CD NVP . . . G 5 3.115 -34.724 25.156 1 27.66 ? CD NVP 999 A 1 HETATM 10 C C2 NVP . . . G 5 2.989 -36.686 21.903 1 42.34 ? C2 NVP 999 A 1 HETATM 11 C C7 NVP . . . G 5 2.564 -36.042 23.081 1 42.41 ? C7 NVP 999 A 1 HETATM 12 N N8 NVP . . . G 5 1.17 -35.995 23.449 1 43.71 ? N8 NVP 999 A 1 HETATM 13 C C9 NVP . . . G 5 0.013 -36.016 22.762 1 38.15 ? C9 NVP 999 A 1 HETATM 14 O OE NVP . . . G 5 -1.068 -35.899 23.351 1 37.59 ? OE NVP 999 A 1 HETATM 15 C C10 NVP . . . G 5 -0.011 -36.149 21.224 1 43.47 ? C10 NVP 999 A 1 HETATM 16 C C15 NVP . . . G 5 0.97 -36.891 20.495 1 36.16 ? C15 NVP 999 A 1 HETATM 17 C C11 NVP . . . G 5 -1.103 -35.614 20.515 1 44.24 ? C11 NVP 999 A 1 HETATM 18 C C12 NVP . . . G 5 -1.203 -35.825 19.131 1 49.49 ? C12 NVP 999 A 1 HETATM 19 C C13 NVP . . . G 5 -0.192 -36.567 18.484 1 47.94 ? C13 NVP 999 A 1 HETATM 20 N N14 NVP . . . G 5 0.869 -37.084 19.155 1 41.09 ? N14 NVP 999 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #