data_2HNV # _model_server_result.job_id 719ZyjP3y9mNuiobYQAr6A _model_server_result.datetime_utc '2025-02-12 10:13:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 2HNV # _exptl.entry_id 2HNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HNV _cell.length_a 110.904 _cell.length_b 110.904 _cell.length_c 126.682 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,P,Q 1 1 C,D,J,K,L,M,R 2 1 E,N,O,S 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 55.452 -96.045681 42.227333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 10 1_555 A SG CYS 48 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 7 A CYS 13 1_555 A SG CYS 21 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 15 A CYS 21 1_555 A SG CYS 38 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 22 A CYS 28 1_555 A SG CYS 28 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 55 A CYS 61 1_555 A SG CYS 67 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 61 A CYS 67 1_555 A SG CYS 79 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 68 A CYS 74 1_555 A SG CYS 73 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 B SG CYS 4 B CYS 10 1_555 B SG CYS 48 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 B SG CYS 7 B CYS 13 1_555 B SG CYS 21 B CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 15 B CYS 21 1_555 B SG CYS 38 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf11 B SG CYS 22 B CYS 28 1_555 B SG CYS 28 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 B SG CYS 55 B CYS 61 1_555 B SG CYS 67 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 B SG CYS 61 B CYS 67 1_555 B SG CYS 79 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf14 B SG CYS 68 B CYS 74 1_555 B SG CYS 73 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 C SG CYS 4 C CYS 10 1_555 C SG CYS 48 C CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 C SG CYS 7 C CYS 13 1_555 C SG CYS 21 C CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 C SG CYS 15 C CYS 21 1_555 C SG CYS 38 C CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf18 C SG CYS 22 C CYS 28 1_555 C SG CYS 28 C CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf19 C SG CYS 55 C CYS 61 1_555 C SG CYS 67 C CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 C SG CYS 61 C CYS 67 1_555 C SG CYS 79 C CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf21 C SG CYS 68 C CYS 74 1_555 C SG CYS 73 C CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf22 D SG CYS 4 D CYS 10 1_555 D SG CYS 48 D CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf23 D SG CYS 7 D CYS 13 1_555 D SG CYS 21 D CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf24 D SG CYS 15 D CYS 21 1_555 D SG CYS 38 D CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf25 D SG CYS 22 D CYS 28 1_555 D SG CYS 28 D CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf26 D SG CYS 55 D CYS 61 1_555 D SG CYS 67 D CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf27 D SG CYS 61 D CYS 67 1_555 D SG CYS 79 D CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf28 D SG CYS 68 D CYS 74 1_555 D SG CYS 73 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf29 E SG CYS 4 E CYS 10 1_555 E SG CYS 48 E CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf30 E SG CYS 7 E CYS 13 1_555 E SG CYS 21 E CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf31 E SG CYS 15 E CYS 21 1_555 E SG CYS 38 E CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf32 E SG CYS 22 E CYS 28 1_555 E SG CYS 28 E CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf33 E SG CYS 55 E CYS 61 1_555 E SG CYS 67 E CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf34 E SG CYS 61 E CYS 67 1_555 E SG CYS 79 E CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf35 E SG CYS 68 E CYS 74 1_555 E SG CYS 73 E CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 F C PHE . A PHE 1 1_555 G N TYR . A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 H C PHE . B PHE 1 1_555 I N TYR . B TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 J C PHE . C PHE 1 1_555 K N TYR . C TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 L C PHE . D PHE 1 1_555 M N TYR . D TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 N C PHE . E PHE 1 1_555 O N TYR . E TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 218 n n N H PHE sing 219 n n N H2 PHE sing 220 n n CA C PHE sing 221 n n CA CB PHE sing 222 n n CA HA PHE sing 223 n n C O PHE doub 224 n n C OXT PHE sing 225 n n CB CG PHE sing 226 n n CB HB2 PHE sing 227 n n CB HB3 PHE sing 228 n n CG CD1 PHE doub 229 n y CG CD2 PHE sing 230 n y CD1 CE1 PHE sing 231 n y CD1 HD1 PHE sing 232 n n CD2 CE2 PHE doub 233 n y CD2 HD2 PHE sing 234 n n CE1 CZ PHE doub 235 n y CE1 HE1 PHE sing 236 n n CE2 CZ PHE sing 237 n y CE2 HE2 PHE sing 238 n n CZ HZ PHE sing 239 n n OXT HXT PHE sing 240 n n # _atom_sites.entry_id 2HNV _atom_sites.fract_transf_matrix[1][1] 0.009017 _atom_sites.fract_transf_matrix[1][2] 0.005206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PHE A 1 1 1 PHE PHE . G 3 TYR A 1 2 2 TYR TYR . H 2 PHE B 1 1 1 PHE PHE . I 3 TYR B 1 2 2 TYR TYR . J 2 PHE C 1 1 1 PHE PHE . K 3 TYR C 1 2 2 TYR TYR . L 2 PHE D 1 1 1 PHE PHE . M 3 TYR D 1 2 2 TYR TYR . N 2 PHE E 1 1 1 PHE PHE . O 3 TYR E 1 2 2 TYR TYR . P 4 HOH A 1 88 6 HOH HOH . P 4 HOH A 2 89 8 HOH HOH . P 4 HOH A 3 90 9 HOH HOH . P 4 HOH A 4 91 12 HOH HOH . P 4 HOH A 5 92 17 HOH HOH . P 4 HOH A 6 93 20 HOH HOH . P 4 HOH A 7 94 25 HOH HOH . P 4 HOH A 8 95 26 HOH HOH . P 4 HOH A 9 96 28 HOH HOH . Q 4 HOH B 1 88 3 HOH HOH . Q 4 HOH B 2 89 7 HOH HOH . Q 4 HOH B 3 90 11 HOH HOH . Q 4 HOH B 4 91 15 HOH HOH . Q 4 HOH B 5 92 21 HOH HOH . Q 4 HOH B 6 93 22 HOH HOH . Q 4 HOH B 7 94 23 HOH HOH . Q 4 HOH B 8 95 27 HOH HOH . R 4 HOH D 1 88 13 HOH HOH . R 4 HOH D 2 89 14 HOH HOH . S 4 HOH E 1 88 1 HOH HOH . S 4 HOH E 2 89 2 HOH HOH . S 4 HOH E 3 90 4 HOH HOH . S 4 HOH E 4 91 5 HOH HOH . S 4 HOH E 5 92 10 HOH HOH . S 4 HOH E 6 93 16 HOH HOH . S 4 HOH E 7 94 18 HOH HOH . S 4 HOH E 8 95 19 HOH HOH . S 4 HOH E 9 96 24 HOH HOH . S 4 HOH E 10 97 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . F 2 52.681 -7.143 5.511 1 34.21 ? N PHE 1 A 1 HETATM 2 C CA PHE . . . F 2 51.26 -7.368 5.13 1 38.01 ? CA PHE 1 A 1 HETATM 3 C C PHE . . . F 2 50.68 -8.479 6.001 1 38.66 ? C PHE 1 A 1 HETATM 4 O O PHE . . . F 2 51.419 -9.299 6.544 1 41.33 ? O PHE 1 A 1 HETATM 5 C CB PHE . . . F 2 51.166 -7.735 3.646 1 39.67 ? CB PHE 1 A 1 HETATM 6 C CG PHE . . . F 2 51.657 -9.114 3.319 1 40.62 ? CG PHE 1 A 1 HETATM 7 C CD1 PHE . . . F 2 50.815 -10.218 3.452 1 41.18 ? CD1 PHE 1 A 1 HETATM 8 C CD2 PHE . . . F 2 52.957 -9.311 2.856 1 40.31 ? CD2 PHE 1 A 1 HETATM 9 C CE1 PHE . . . F 2 51.264 -11.503 3.124 1 39.99 ? CE1 PHE 1 A 1 HETATM 10 C CE2 PHE . . . F 2 53.416 -10.587 2.525 1 40.01 ? CE2 PHE 1 A 1 HETATM 11 C CZ PHE . . . F 2 52.57 -11.683 2.658 1 37.37 ? CZ PHE 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #