data_2HNY # _model_server_result.job_id S_uY3Win4DMEdxuySxWJsw _model_server_result.datetime_utc '2024-11-28 15:10:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1301}' # _entry.id 2HNY # _exptl.entry_id 2HNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HNY _cell.length_a 139.6 _cell.length_b 115 _cell.length_c 65.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 276 A LEU 279 1_555 A N CSD 277 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSD 277 A CSD 280 1_555 A N LYS 278 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD2 ASP 440 A ASP 443 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc2 H O HOH . A HOH 1037 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 312 n n P O2 PO4 sing 313 n n P O3 PO4 sing 314 n n P O4 PO4 sing 315 n n # _atom_sites.entry_id 2HNY _atom_sites.fract_transf_matrix[1][1] 0.007163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 1300 1300 PO4 PO4 . D 3 PO4 A 1 1301 1301 PO4 PO4 . E 3 PO4 A 1 1302 1302 PO4 PO4 . F 4 MG A 1 1303 1303 MG MG . G 5 NVP A 1 999 999 NVP NVP . H 6 HOH A 1 1001 1001 HOH WAT . H 6 HOH A 2 1002 1002 HOH WAT . H 6 HOH A 3 1003 1003 HOH WAT . H 6 HOH A 4 1005 1005 HOH WAT . H 6 HOH A 5 1006 1006 HOH WAT . H 6 HOH A 6 1007 1007 HOH WAT . H 6 HOH A 7 1008 1008 HOH WAT . H 6 HOH A 8 1009 1009 HOH WAT . H 6 HOH A 9 1010 1010 HOH WAT . H 6 HOH A 10 1011 1011 HOH WAT . H 6 HOH A 11 1012 1012 HOH WAT . H 6 HOH A 12 1013 1013 HOH WAT . H 6 HOH A 13 1014 1014 HOH WAT . H 6 HOH A 14 1015 1015 HOH WAT . H 6 HOH A 15 1016 1016 HOH WAT . H 6 HOH A 16 1017 1017 HOH WAT . H 6 HOH A 17 1018 1018 HOH WAT . H 6 HOH A 18 1019 1019 HOH WAT . H 6 HOH A 19 1020 1020 HOH WAT . H 6 HOH A 20 1021 1021 HOH WAT . H 6 HOH A 21 1022 1022 HOH WAT . H 6 HOH A 22 1023 1023 HOH WAT . H 6 HOH A 23 1024 1024 HOH WAT . H 6 HOH A 24 1025 1025 HOH WAT . H 6 HOH A 25 1026 1026 HOH WAT . H 6 HOH A 26 1027 1027 HOH WAT . H 6 HOH A 27 1028 1028 HOH WAT . H 6 HOH A 28 1029 1029 HOH WAT . H 6 HOH A 29 1030 1030 HOH WAT . H 6 HOH A 30 1031 1031 HOH WAT . H 6 HOH A 31 1032 1032 HOH WAT . H 6 HOH A 32 1033 1033 HOH WAT . H 6 HOH A 33 1034 1034 HOH WAT . H 6 HOH A 34 1035 1035 HOH WAT . H 6 HOH A 35 1036 1036 HOH WAT . H 6 HOH A 36 1037 1037 HOH WAT . H 6 HOH A 37 1038 1038 HOH WAT . H 6 HOH A 38 1060 1060 HOH WAT . H 6 HOH A 39 1064 1064 HOH WAT . H 6 HOH A 40 1065 1065 HOH WAT . H 6 HOH A 41 1066 1066 HOH WAT . H 6 HOH A 42 1067 1067 HOH WAT . H 6 HOH A 43 1068 1068 HOH WAT . H 6 HOH A 44 1069 1069 HOH WAT . H 6 HOH A 45 1070 1070 HOH WAT . H 6 HOH A 46 1071 1071 HOH WAT . H 6 HOH A 47 1072 1072 HOH WAT . H 6 HOH A 48 1073 1073 HOH WAT . H 6 HOH A 49 1074 1074 HOH WAT . H 6 HOH A 50 1075 1075 HOH WAT . H 6 HOH A 51 1076 1076 HOH WAT . I 6 HOH B 1 1004 1004 HOH WAT . I 6 HOH B 2 1039 1039 HOH WAT . I 6 HOH B 3 1040 1040 HOH WAT . I 6 HOH B 4 1041 1041 HOH WAT . I 6 HOH B 5 1042 1042 HOH WAT . I 6 HOH B 6 1043 1043 HOH WAT . I 6 HOH B 7 1044 1044 HOH WAT . I 6 HOH B 8 1045 1045 HOH WAT . I 6 HOH B 9 1046 1046 HOH WAT . I 6 HOH B 10 1047 1047 HOH WAT . I 6 HOH B 11 1048 1048 HOH WAT . I 6 HOH B 12 1049 1049 HOH WAT . I 6 HOH B 13 1050 1050 HOH WAT . I 6 HOH B 14 1051 1051 HOH WAT . I 6 HOH B 15 1052 1052 HOH WAT . I 6 HOH B 16 1053 1053 HOH WAT . I 6 HOH B 17 1054 1054 HOH WAT . I 6 HOH B 18 1055 1055 HOH WAT . I 6 HOH B 19 1056 1056 HOH WAT . I 6 HOH B 20 1057 1057 HOH WAT . I 6 HOH B 21 1058 1058 HOH WAT . I 6 HOH B 22 1059 1059 HOH WAT . I 6 HOH B 23 1061 1061 HOH WAT . I 6 HOH B 24 1062 1062 HOH WAT . I 6 HOH B 25 1063 1063 HOH WAT . I 6 HOH B 26 1077 1077 HOH WAT . I 6 HOH B 27 1078 1078 HOH WAT . I 6 HOH B 28 1079 1079 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 31.124 22.629 -6.087 1 127.07 ? P PO4 1301 A 1 HETATM 2 O O1 PO4 . . . D 3 29.776 22.26 -6.588 1 126.35 ? O1 PO4 1301 A 1 HETATM 3 O O2 PO4 . . . D 3 31.697 21.49 -5.318 1 127.18 ? O2 PO4 1301 A 1 HETATM 4 O O3 PO4 . . . D 3 32.007 22.944 -7.24 1 129.9 ? O3 PO4 1301 A 1 HETATM 5 O O4 PO4 . . . D 3 31.018 23.821 -5.203 1 126.17 ? O4 PO4 1301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #