data_2HOP # _model_server_result.job_id k_ViZq93QVJccBscCUdotw _model_server_result.datetime_utc '2024-11-17 05:53:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":92}' # _entry.id 2HOP # _exptl.entry_id 2HOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 259.327 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-HYDROXYETHYL)-2-METHYLPYRIDINIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HOP _cell.length_a 61.3 _cell.length_b 61.3 _cell.length_c 103.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 G 32 A G 40 1_555 B MG MG . A MG 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 9 1_555 A N3 C 82 A C 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 9 1_555 A O2 C 82 A C 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 9 1_555 A N4 C 82 A C 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 C 2 A C 10 1_555 A N1 G 81 A G 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 C 2 A C 10 1_555 A O6 G 81 A G 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 C 2 A C 10 1_555 A N2 G 81 A G 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 G 3 A G 11 1_555 A N3 C 80 A C 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 G 3 A G 11 1_555 A O2 C 80 A C 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 G 3 A G 11 1_555 A N4 C 80 A C 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 A 4 A A 12 1_555 A N3 U 79 A U 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 A 4 A A 12 1_555 A O4 U 79 A U 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 C 5 A C 13 1_555 A N1 G 78 A G 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 C 5 A C 13 1_555 A O6 G 78 A G 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 C 5 A C 13 1_555 A N2 G 78 A G 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 U 6 A U 14 1_555 A N1 A 77 A A 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 U 6 A U 14 1_555 A N6 A 77 A A 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 C 7 A C 15 1_555 A N1 G 43 A G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 C 7 A C 15 1_555 A O6 G 43 A G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 C 7 A C 15 1_555 A N2 G 43 A G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 G 8 A G 16 1_555 A N3 C 42 A C 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 G 8 A G 16 1_555 A O2 C 42 A C 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 G 8 A G 16 1_555 A N4 C 42 A C 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog23 A N2 G 8 A G 16 1_555 A N3 A 76 A A 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 G 9 A G 17 1_555 A N3 C 41 A C 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 G 9 A G 17 1_555 A O2 C 41 A C 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 G 9 A G 17 1_555 A N4 C 41 A C 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog27 A N2 G 9 A G 17 1_555 A N3 A 48 A A 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog28 A O6 G 10 A G 18 1_555 A N6 A 39 A A 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N1 G 10 A G 18 1_555 A N3 C 40 A C 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N2 G 10 A G 18 1_555 A O2 C 40 A C 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O6 G 10 A G 18 1_555 A N4 C 40 A C 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog32 A N2 G 11 A G 19 1_555 A N3 G 34 A G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog33 A N3 G 11 A G 19 1_555 A N2 G 34 A G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog34 A N1 G 11 A G 19 1_555 A N1 A 39 A A 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog35 A O6 G 11 A G 19 1_555 A N6 A 39 A A 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog36 A N3 U 12 A U 20 1_555 A N1 A 37 A A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog37 A N1 G 13 A G 21 1_555 A O2 C 30 A C 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 C 14 A C 22 1_555 A N1 G 29 A G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N4 C 14 A C 22 1_555 A O6 G 29 A G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O2 C 14 A C 22 1_555 A N2 G 29 A G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N3 C 15 A C 23 1_555 A N1 G 28 A G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N4 C 15 A C 23 1_555 A O6 G 28 A G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A O2 C 15 A C 23 1_555 A N2 G 28 A G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog44 A N3 C 16 A C 24 1_555 A N6 A 27 A A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog45 A N2 G 29 A G 37 1_555 A N1 A 62 A A 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog46 A N3 U 31 A U 39 1_555 A N7 A 35 A A 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog47 A O2 U 31 A U 39 1_555 A N6 A 35 A A 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog48 A N7 A 45 A A 53 1_555 A N6 A 76 A A 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-G MISPAIR' hydrog49 A N7 A 48 A A 56 1_555 A N2 G 75 A G 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 A N3 C 49 A C 57 1_555 A N1 G 74 A G 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 A N4 C 49 A C 57 1_555 A O6 G 74 A G 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog52 A O2 C 49 A C 57 1_555 A N2 G 74 A G 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog53 A N3 C 50 A C 58 1_555 A N1 G 73 A G 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog54 A N4 C 50 A C 58 1_555 A O6 G 73 A G 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog55 A O2 C 50 A C 58 1_555 A N2 G 73 A G 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog56 A N3 U 51 A U 59 1_555 A N1 A 72 A A 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog57 A O4 U 51 A U 59 1_555 A N6 A 72 A A 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog58 A N3 U 56 A U 64 1_555 A N1 A 67 A A 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog59 A O4 U 56 A U 64 1_555 A N6 A 67 A A 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog60 A N1 G 58 A G 66 1_555 A N3 C 66 A C 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H19 N4 O 1' _chem_comp.formula_weight 259.327 _chem_comp.id 218 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-HYDROXYETHYL)-2-METHYLPYRIDINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM2 C2A 218 sing 1 n n CM2 HM21 218 sing 2 n n CM2 HM22 218 sing 3 n n CM2 HM23 218 sing 4 n n C2A N1A 218 sing 5 n y C2A N3A 218 doub 6 n y N1A C6A 218 doub 7 n y C6A C5A 218 sing 8 n y C6A H6A 218 sing 9 n n C5A C7A 218 sing 10 n n C5A C4A 218 doub 11 n y C7A N3 218 sing 12 n n C7A H7A1 218 sing 13 n n C7A H7A2 218 sing 14 n n N3 C2 218 sing 15 n y N3 C4 218 doub 16 n y C2 C1 218 doub 17 n y C2 H2 218 sing 18 n n C1 C6 218 sing 19 n y C1 H1 218 sing 20 n n C6 C5 218 doub 21 n y C6 H6 218 sing 22 n n C5 CM6 218 sing 23 n n C5 C4 218 sing 24 n y CM6 CM7 218 sing 25 n n CM6 HM61 218 sing 26 n n CM6 HM62 218 sing 27 n n CM7 OM7 218 sing 28 n n CM7 HM71 218 sing 29 n n CM7 HM72 218 sing 30 n n OM7 HOM7 218 sing 31 n n C4 CM4 218 sing 32 n n CM4 HM41 218 sing 33 n n CM4 HM42 218 sing 34 n n CM4 HM43 218 sing 35 n n C4A N4A 218 sing 36 n n C4A N3A 218 sing 37 n y N4A H4A1 218 sing 38 n n N4A H4A2 218 sing 39 n n # _atom_sites.entry_id 2HOP _atom_sites.fract_transf_matrix[1][1] 0.016313 _atom_sites.fract_transf_matrix[1][2] 0.009418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 93 93 MG MG . C 2 MG A 1 94 94 MG MG . D 3 CA A 1 95 95 CA CA . E 2 MG A 1 96 96 MG MG . F 4 218 A 1 92 92 218 218 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM2 218 . . . F 4 -12.219 16.596 54.436 1 57.08 ? CM2 218 92 A 1 HETATM 2 C C2A 218 . . . F 4 -10.964 15.812 54.157 1 57.52 ? C2A 218 92 A 1 HETATM 3 N N1A 218 . . . F 4 -9.779 16.459 54.115 1 57.45 ? N1A 218 92 A 1 HETATM 4 C C6A 218 . . . F 4 -8.606 15.8 53.872 1 57.32 ? C6A 218 92 A 1 HETATM 5 C C5A 218 . . . F 4 -8.604 14.396 53.647 1 57.66 ? C5A 218 92 A 1 HETATM 6 C C7A 218 . . . F 4 -7.308 13.64 53.382 1 58.64 ? C7A 218 92 A 1 HETATM 7 N N3 218 . . . F 4 -6.061 14.412 53.01 1 60.78 ? N3 218 92 A 1 HETATM 8 C C2 218 . . . F 4 -5.748 14.546 51.667 1 60.75 ? C2 218 92 A 1 HETATM 9 C C1 218 . . . F 4 -4.603 15.237 51.238 1 60.92 ? C1 218 92 A 1 HETATM 10 C C6 218 . . . F 4 -3.737 15.812 52.213 1 60.74 ? C6 218 92 A 1 HETATM 11 C C5 218 . . . F 4 -4.017 15.699 53.614 1 61.03 ? C5 218 92 A 1 HETATM 12 C CM6 218 . . . F 4 -3.041 16.327 54.608 1 60.13 ? CM6 218 92 A 1 HETATM 13 C CM7 218 . . . F 4 -1.791 15.399 54.752 1 59.46 ? CM7 218 92 A 1 HETATM 14 O OM7 218 . . . F 4 -2.126 14.083 55.242 1 57.76 ? OM7 218 92 A 1 HETATM 15 C C4 218 . . . F 4 -5.222 14.976 54.026 1 61.65 ? C4 218 92 A 1 HETATM 16 C CM4 218 . . . F 4 -5.56 14.83 55.54 1 61.71 ? CM4 218 92 A 1 HETATM 17 C C4A 218 . . . F 4 -9.88 13.733 53.696 1 57.41 ? C4A 218 92 A 1 HETATM 18 N N4A 218 . . . F 4 -9.965 12.371 53.489 1 57.65 ? N4A 218 92 A 1 HETATM 19 N N3A 218 . . . F 4 -11.021 14.468 53.948 1 57.57 ? N3A 218 92 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #