data_2HPM # _model_server_result.job_id 9UDgcn9NdF0vEhMK6srnDQ _model_server_result.datetime_utc '2025-07-12 11:08:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1227}' # _entry.id 2HPM # _exptl.entry_id 2HPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 257.955 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HPM _cell.length_a 174.442 _cell.length_b 185.724 _cell.length_c 125.836 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 62.918 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 11 A HIS 11 1_555 C ZN ZN . A ZN 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc2 A NE2 HIS 13 A HIS 13 1_555 C ZN ZN . A ZN 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 A OD2 ASP 20 A ASP 20 1_555 B ZN ZN . A ZN 1221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc4 A NE2 HIS 47 A HIS 47 1_555 B ZN ZN . A ZN 1221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc5 A OE1 GLU 72 A GLU 72 1_555 C ZN ZN . A ZN 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? metalc ? metalc6 A OE1 GLU 149 A GLU 149 1_555 E MG MG . A MG 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc7 A OD2 ASP 169 A ASP 169 1_555 E MG MG . A MG 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc8 A OD1 ASP 169 A ASP 169 1_555 E MG MG . A MG 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc9 A OD1 ASP 212 A ASP 212 1_555 C ZN ZN . A ZN 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 A OD2 ASP 212 A ASP 212 1_555 C ZN ZN . A ZN 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc11 A NE2 HIS 214 A HIS 214 1_555 B ZN ZN . A ZN 1221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc12 A OD1 ASP 465 A ASP 465 1_555 D MG MG . A MG 1223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'H5 O10 P3' _chem_comp.formula_weight 257.955 _chem_comp.id 3PO _chem_comp.mon_nstd_flag . _chem_comp.name TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G 3PO doub 1 n n PG O2G 3PO sing 2 n n PG O3G 3PO sing 3 n n PG O3B 3PO sing 4 n n O2G HOG2 3PO sing 5 n n O3G HOG3 3PO sing 6 n n PB O1B 3PO doub 7 n n PB O2B 3PO sing 8 n n PB O3B 3PO sing 9 n n PB O3A 3PO sing 10 n n O2B HOB2 3PO sing 11 n n PA O1A 3PO doub 12 n n PA O2A 3PO sing 13 n n PA O3A 3PO sing 14 n n PA O5' 3PO sing 15 n n O2A HOA2 3PO sing 16 n n O5' HO5' 3PO sing 17 n n # _atom_sites.entry_id 2HPM _atom_sites.fract_transf_matrix[1][1] 0.005733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1221 1 ZN ZN . C 2 ZN A 1 1222 2 ZN ZN . D 3 MG A 1 1223 3 MG MG . E 3 MG A 1 1224 4 MG MG . F 4 CL A 1 1225 5 CL CL . G 4 CL A 1 1226 6 CL CL . H 5 3PO A 1 1227 15 3PO 3PO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG 3PO . . . H 5 -46.782 -20.954 32.588 0.5 135.46 ? PG 3PO 1227 A 1 HETATM 2 O O1G 3PO . . . H 5 -47.495 -20.427 31.323 0.5 133.25 ? O1G 3PO 1227 A 1 HETATM 3 O O2G 3PO . . . H 5 -47.139 -20.198 33.886 0.5 126.69 ? O2G 3PO 1227 A 1 HETATM 4 O O3G 3PO . . . H 5 -45.294 -21.175 32.399 0.5 131.59 ? O3G 3PO 1227 A 1 HETATM 5 P PB 3PO . . . H 5 -48.904 -22.871 32.816 0.5 124.2 ? PB 3PO 1227 A 1 HETATM 6 O O1B 3PO . . . H 5 -49.167 -23.624 34.112 0.5 119.45 ? O1B 3PO 1227 A 1 HETATM 7 O O2B 3PO . . . H 5 -49.753 -21.661 32.468 0.5 123.9 ? O2B 3PO 1227 A 1 HETATM 8 O O3B 3PO . . . H 5 -47.324 -22.487 32.77 0.5 129.58 ? O3B 3PO 1227 A 1 HETATM 9 P PA 3PO . . . H 5 -48.654 -23.603 30.089 0.5 118.38 ? PA 3PO 1227 A 1 HETATM 10 O O1A 3PO . . . H 5 -49.352 -22.245 29.736 0.5 117.88 ? O1A 3PO 1227 A 1 HETATM 11 O O2A 3PO . . . H 5 -47.095 -23.547 30.129 0.5 118.88 ? O2A 3PO 1227 A 1 HETATM 12 O O3A 3PO . . . H 5 -49.058 -23.94 31.617 0.5 118.84 ? O3A 3PO 1227 A 1 HETATM 13 O O5' 3PO . . . H 5 -49.244 -24.832 29.344 0.5 113.5 ? O5' 3PO 1227 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #