data_2HPQ
#
_model_server_result.job_id            XKWGbzA9MNB3KK9pxigbZQ 
_model_server_result.datetime_utc      '2024-12-27 02:37:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hpq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    2HPQ 
#
_exptl.entry_id    2HPQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.962 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HPQ 
_cell.length_a            123.6 
_cell.length_b            123.6 
_cell.length_c            101.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HPQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
disulf ? disulf5 C SG CYS 1 P CYS 301 1_555 C SG CYS 79 P CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 C SG CYS 22 P CYS 322 1_555 C SG CYS 62 P CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
disulf ? disulf7 C SG CYS 50 P CYS 350 1_555 C SG CYS 74 P CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C21 H31 Cl N6 O3' 
_chem_comp.formula_weight    450.962 
_chem_comp.id                0G7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     'd-Phe-Pro-Arg chloromethylketone (PPACK)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O 0G7 doub 1 n n 
N CA 0G7 sing 2 n n 
N HN 0G7 sing 3 n n 
N HNA 0G7 sing 4 n n 
C1 CA1 0G7 sing 5 n n 
C1 O1 0G7 doub 6 n n 
N1 C 0G7 sing 7 n n 
N1 CA1 0G7 sing 8 n n 
C2 CA2 0G7 sing 9 n n 
C2 O2 0G7 doub 10 n n 
N2 C1 0G7 sing 11 n n 
N2 HN2 0G7 sing 12 n n 
C3 C2 0G7 sing 13 n n 
C3 CL1 0G7 sing 14 n n 
C3 H3 0G7 sing 15 n n 
C3 H3A 0G7 sing 16 n n 
CA C 0G7 sing 17 n n 
CA CB 0G7 sing 18 n n 
CA HA 0G7 sing 19 n n 
CB CG 0G7 sing 20 n n 
CB HB 0G7 sing 21 n n 
CB HBA 0G7 sing 22 n n 
CD N1 0G7 sing 23 n n 
CD CG1 0G7 sing 24 n n 
NE CD3 0G7 sing 25 n n 
NE CZ1 0G7 sing 26 n n 
NE HNE 0G7 sing 27 n n 
CG CD1 0G7 doub 28 n y 
CG CD2 0G7 sing 29 n y 
CZ HZ 0G7 sing 30 n n 
CA1 HA1 0G7 sing 31 n n 
CA2 N2 0G7 sing 32 n n 
CA2 CB2 0G7 sing 33 n n 
CA2 HA2 0G7 sing 34 n n 
CB1 CA1 0G7 sing 35 n n 
CB1 HB1 0G7 sing 36 n n 
CB1 HB1A 0G7 sing 37 n n 
CB2 HB2 0G7 sing 38 n n 
CB2 HB2A 0G7 sing 39 n n 
CD1 CE1 0G7 sing 40 n y 
CD1 HD1 0G7 sing 41 n n 
CD2 CE2 0G7 doub 42 n y 
CD2 HD2 0G7 sing 43 n n 
CD3 CG2 0G7 sing 44 n n 
CD3 HD3 0G7 sing 45 n n 
CD3 HD3A 0G7 sing 46 n n 
CE1 CZ 0G7 doub 47 n y 
CE1 HE1 0G7 sing 48 n n 
CE2 CZ 0G7 sing 49 n y 
CE2 HE2 0G7 sing 50 n n 
CG1 CB1 0G7 sing 51 n n 
CG2 CB2 0G7 sing 52 n n 
CG2 HG2 0G7 sing 53 n n 
CG2 HG2A 0G7 sing 54 n n 
NH1 HNH1 0G7 sing 55 n n 
NH1 HNHA 0G7 sing 56 n n 
NH2 CZ1 0G7 doub 57 n n 
NH2 HNH2 0G7 sing 58 n n 
CZ1 NH1 0G7 sing 59 n n 
CD HD 0G7 sing 60 n n 
CD H29 0G7 sing 61 n n 
CG1 HG1 0G7 sing 62 n n 
CG1 H31 0G7 sing 63 n n 
#
_atom_sites.entry_id                     2HPQ 
_atom_sites.fract_transf_matrix[1][1]    0.008091 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008091 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009891 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 0G7 H 1 1 1 0G7 0G7 . 
E 5 HOH L 1 380 380 HOH HOH . 
E 5 HOH L 2 382 382 HOH HOH . 
E 5 HOH L 3 414 414 HOH HOH . 
E 5 HOH L 4 417 417 HOH HOH . 
E 5 HOH L 5 456 456 HOH HOH . 
E 5 HOH L 6 484 484 HOH HOH . 
E 5 HOH L 7 486 486 HOH HOH . 
E 5 HOH L 8 494 494 HOH HOH . 
E 5 HOH L 9 496 496 HOH HOH . 
E 5 HOH L 10 498 498 HOH HOH . 
E 5 HOH L 11 503 503 HOH HOH . 
E 5 HOH L 12 504 504 HOH HOH . 
E 5 HOH L 13 514 514 HOH HOH . 
E 5 HOH L 14 517 517 HOH HOH . 
E 5 HOH L 15 527 527 HOH HOH . 
E 5 HOH L 16 532 532 HOH HOH . 
E 5 HOH L 17 560 560 HOH HOH . 
E 5 HOH L 18 561 561 HOH HOH . 
E 5 HOH L 19 573 573 HOH HOH . 
F 5 HOH H 1 381 381 HOH HOH . 
F 5 HOH H 2 383 383 HOH HOH . 
F 5 HOH H 3 384 384 HOH HOH . 
F 5 HOH H 4 385 385 HOH HOH . 
F 5 HOH H 5 386 386 HOH HOH . 
F 5 HOH H 6 387 387 HOH HOH . 
F 5 HOH H 7 388 388 HOH HOH . 
F 5 HOH H 8 389 389 HOH HOH . 
F 5 HOH H 9 390 390 HOH HOH . 
F 5 HOH H 10 391 391 HOH HOH . 
F 5 HOH H 11 392 392 HOH HOH . 
F 5 HOH H 12 393 393 HOH HOH . 
F 5 HOH H 13 398 398 HOH HOH . 
F 5 HOH H 14 399 399 HOH HOH . 
F 5 HOH H 15 400 400 HOH HOH . 
F 5 HOH H 16 402 402 HOH HOH . 
F 5 HOH H 17 403 403 HOH HOH . 
F 5 HOH H 18 409 409 HOH HOH . 
F 5 HOH H 19 411 411 HOH HOH . 
F 5 HOH H 20 415 415 HOH HOH . 
F 5 HOH H 21 420 420 HOH HOH . 
F 5 HOH H 22 422 422 HOH HOH . 
F 5 HOH H 23 423 423 HOH HOH . 
F 5 HOH H 24 428 428 HOH HOH . 
F 5 HOH H 25 430 430 HOH HOH . 
F 5 HOH H 26 432 432 HOH HOH . 
F 5 HOH H 27 437 437 HOH HOH . 
F 5 HOH H 28 441 441 HOH HOH . 
F 5 HOH H 29 442 442 HOH HOH . 
F 5 HOH H 30 443 443 HOH HOH . 
F 5 HOH H 31 446 446 HOH HOH . 
F 5 HOH H 32 447 447 HOH HOH . 
F 5 HOH H 33 449 449 HOH HOH . 
F 5 HOH H 34 454 454 HOH HOH . 
F 5 HOH H 35 458 458 HOH HOH . 
F 5 HOH H 36 463 463 HOH HOH . 
F 5 HOH H 37 464 464 HOH HOH . 
F 5 HOH H 38 465 465 HOH HOH . 
F 5 HOH H 39 467 467 HOH HOH . 
F 5 HOH H 40 472 472 HOH HOH . 
F 5 HOH H 41 477 477 HOH HOH . 
F 5 HOH H 42 479 479 HOH HOH . 
F 5 HOH H 43 485 485 HOH HOH . 
F 5 HOH H 44 500 500 HOH HOH . 
F 5 HOH H 45 502 502 HOH HOH . 
F 5 HOH H 46 505 505 HOH HOH . 
F 5 HOH H 47 509 509 HOH HOH . 
F 5 HOH H 48 510 510 HOH HOH . 
F 5 HOH H 49 512 512 HOH HOH . 
F 5 HOH H 50 513 513 HOH HOH . 
F 5 HOH H 51 515 515 HOH HOH . 
F 5 HOH H 52 522 522 HOH HOH . 
F 5 HOH H 53 523 523 HOH HOH . 
F 5 HOH H 54 524 524 HOH HOH . 
F 5 HOH H 55 525 525 HOH HOH . 
F 5 HOH H 56 529 529 HOH HOH . 
F 5 HOH H 57 531 531 HOH HOH . 
F 5 HOH H 58 535 535 HOH HOH . 
F 5 HOH H 59 545 545 HOH HOH . 
F 5 HOH H 60 547 547 HOH HOH . 
F 5 HOH H 61 548 548 HOH HOH . 
F 5 HOH H 62 552 552 HOH HOH . 
F 5 HOH H 63 553 553 HOH HOH . 
F 5 HOH H 64 554 554 HOH HOH . 
F 5 HOH H 65 555 555 HOH HOH . 
F 5 HOH H 66 565 565 HOH HOH . 
F 5 HOH H 67 566 566 HOH HOH . 
F 5 HOH H 68 568 568 HOH HOH . 
F 5 HOH H 69 569 569 HOH HOH . 
F 5 HOH H 70 571 571 HOH HOH . 
F 5 HOH H 71 574 574 HOH HOH . 
F 5 HOH H 72 587 587 HOH HOH . 
F 5 HOH H 73 590 590 HOH HOH . 
F 5 HOH H 74 591 591 HOH HOH . 
F 5 HOH H 75 594 594 HOH HOH . 
F 5 HOH H 76 596 596 HOH HOH . 
F 5 HOH H 77 597 597 HOH HOH . 
F 5 HOH H 78 601 601 HOH HOH . 
F 5 HOH H 79 606 606 HOH HOH . 
G 5 HOH P 1 394 394 HOH HOH . 
G 5 HOH P 2 395 395 HOH HOH . 
G 5 HOH P 3 396 396 HOH HOH . 
G 5 HOH P 4 397 397 HOH HOH . 
G 5 HOH P 5 406 406 HOH HOH . 
G 5 HOH P 6 407 407 HOH HOH . 
G 5 HOH P 7 408 408 HOH HOH . 
G 5 HOH P 8 410 410 HOH HOH . 
G 5 HOH P 9 499 499 HOH HOH . 
G 5 HOH P 10 516 516 HOH HOH . 
G 5 HOH P 11 519 519 HOH HOH . 
G 5 HOH P 12 526 526 HOH HOH . 
G 5 HOH P 13 541 541 HOH HOH . 
G 5 HOH P 14 549 549 HOH HOH . 
G 5 HOH P 15 550 550 HOH HOH . 
G 5 HOH P 16 551 551 HOH HOH . 
G 5 HOH P 17 557 557 HOH HOH . 
G 5 HOH P 18 559 559 HOH HOH . 
G 5 HOH P 19 570 570 HOH HOH . 
G 5 HOH P 20 577 577 HOH HOH . 
G 5 HOH P 21 578 578 HOH HOH . 
G 5 HOH P 22 586 586 HOH HOH . 
G 5 HOH P 23 588 588 HOH HOH . 
G 5 HOH P 24 592 592 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 0G7 . . . D 4 140.465 56.65 20.624 1 16.4 ? N 0G7 1 H 1 
HETATM 2 C CA 0G7 . . . D 4 140.942 55.752 21.608 1 16.47 ? CA 0G7 1 H 1 
HETATM 3 C C 0G7 . . . D 4 140.679 54.284 21.272 1 16.91 ? C 0G7 1 H 1 
HETATM 4 O O 0G7 . . . D 4 141.269 53.882 20.277 1 16.89 ? O 0G7 1 H 1 
HETATM 5 C CB 0G7 . . . D 4 142.459 55.674 21.762 1 15.77 ? CB 0G7 1 H 1 
HETATM 6 C CG 0G7 . . . D 4 142.851 55.134 23.117 1 16.06 ? CG 0G7 1 H 1 
HETATM 7 C CD1 0G7 . . . D 4 142.25 55.621 24.277 1 16.1 ? CD1 0G7 1 H 1 
HETATM 8 C CD2 0G7 . . . D 4 143.831 54.174 23.275 1 16.23 ? CD2 0G7 1 H 1 
HETATM 9 C CE1 0G7 . . . D 4 142.593 55.198 25.538 1 15.65 ? CE1 0G7 1 H 1 
HETATM 10 C CE2 0G7 . . . D 4 144.203 53.702 24.529 1 15.98 ? CE2 0G7 1 H 1 
HETATM 11 C CZ 0G7 . . . D 4 143.575 54.235 25.661 1 15.71 ? CZ 0G7 1 H 1 
HETATM 12 N N1 0G7 . . . D 4 139.897 53.675 22.137 1 17.37 ? N1 0G7 1 H 1 
HETATM 13 C CA1 0G7 . . . D 4 139.581 52.236 21.99 1 17.61 ? CA1 0G7 1 H 1 
HETATM 14 C C1 0G7 . . . D 4 138.733 52.103 20.733 1 17.77 ? C1 0G7 1 H 1 
HETATM 15 O O1 0G7 . . . D 4 138.027 53.132 20.529 1 18.13 ? O1 0G7 1 H 1 
HETATM 16 C CB1 0G7 . . . D 4 138.804 51.819 23.215 1 17.39 ? CB1 0G7 1 H 1 
HETATM 17 C CG1 0G7 . . . D 4 138.624 53.059 24.014 1 17.45 ? CG1 0G7 1 H 1 
HETATM 18 C CD 0G7 . . . D 4 139.284 54.242 23.34 1 17.36 ? CD 0G7 1 H 1 
HETATM 19 N N2 0G7 . . . D 4 138.809 50.994 20.03 1 17.76 ? N2 0G7 1 H 1 
HETATM 20 C CA2 0G7 . . . D 4 138.009 50.808 18.79 1 17.65 ? CA2 0G7 1 H 1 
HETATM 21 C C2 0G7 . . . D 4 136.98 49.683 18.959 1 17.51 ? C2 0G7 1 H 1 
HETATM 22 O O2 0G7 . . . D 4 136.116 49.428 18.087 1 17.84 ? O2 0G7 1 H 1 
HETATM 23 C CB2 0G7 . . . D 4 138.857 50.614 17.54 1 17.34 ? CB2 0G7 1 H 1 
HETATM 24 C CG2 0G7 . . . D 4 139.146 51.748 16.593 1 16.52 ? CG2 0G7 1 H 1 
HETATM 25 C CD3 0G7 . . . D 4 140.382 52.48 16.966 1 17.6 ? CD3 0G7 1 H 1 
HETATM 26 N NE 0G7 . . . D 4 140.986 53.279 15.904 1 18.46 ? NE 0G7 1 H 1 
HETATM 27 C CZ1 0G7 . . . D 4 141.747 52.868 14.876 1 18.75 ? CZ1 0G7 1 H 1 
HETATM 28 N NH1 0G7 . . . D 4 142.203 51.639 14.531 1 18.84 ? NH1 0G7 1 H 1 
HETATM 29 N NH2 0G7 . . . D 4 142.102 53.844 14.019 1 18.21 ? NH2 0G7 1 H 1 
HETATM 30 C C3 0G7 . . . D 4 137.029 49.013 20 1 17.13 ? C3 0G7 1 H 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           30 
#