data_2HQ9
#
_model_server_result.job_id            Ofm_IZuBqY-4SfLD1uju4w 
_model_server_result.datetime_utc      '2025-04-05 03:42:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hq9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    2HQ9 
#
_exptl.entry_id    2HQ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HQ9 
_cell.length_a            47.852 
_cell.length_b            74.895 
_cell.length_c            84.626 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HQ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 2 A MSE 1 1_555 A N LEU 3 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 A C SER 50 A SER 49 1_555 A N MSE 51 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale4 A C MSE 51 A MSE 50 1_555 A N PRO 52 A PRO 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C TRP 58 A TRP 57 1_555 A N MSE 59 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale6 A C MSE 59 A MSE 58 1_555 A N ARG 60 A ARG 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 B C MSE 2 B MSE 1 1_555 B N LEU 3 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale8 B C SER 50 B SER 49 1_555 B N MSE 51 B MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale9 B C MSE 51 B MSE 50 1_555 B N PRO 52 B PRO 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale10 B C TRP 58 B TRP 57 1_555 B N MSE 59 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 B C MSE 59 B MSE 58 1_555 B N ARG 60 B ARG 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     2HQ9 
_atom_sites.fract_transf_matrix[1][1]    0.020898 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 149 1 CL CL . 
D 3 FAD A 1 200 200 FAD FAD . 
E 4 EDO A 1 201 2 EDO EDO . 
F 3 FAD B 1 200 200 FAD FAD . 
G 5 HOH A 1 202 4 HOH HOH . 
G 5 HOH A 2 203 5 HOH HOH . 
G 5 HOH A 3 204 10 HOH HOH . 
G 5 HOH A 4 205 11 HOH HOH . 
G 5 HOH A 5 206 17 HOH HOH . 
G 5 HOH A 6 207 20 HOH HOH . 
G 5 HOH A 7 208 21 HOH HOH . 
G 5 HOH A 8 209 24 HOH HOH . 
G 5 HOH A 9 210 25 HOH HOH . 
G 5 HOH A 10 211 26 HOH HOH . 
G 5 HOH A 11 212 27 HOH HOH . 
G 5 HOH A 12 213 28 HOH HOH . 
G 5 HOH A 13 214 30 HOH HOH . 
G 5 HOH A 14 215 33 HOH HOH . 
G 5 HOH A 15 216 34 HOH HOH . 
G 5 HOH A 16 217 35 HOH HOH . 
G 5 HOH A 17 218 36 HOH HOH . 
G 5 HOH A 18 219 37 HOH HOH . 
G 5 HOH A 19 220 39 HOH HOH . 
G 5 HOH A 20 221 40 HOH HOH . 
G 5 HOH A 21 222 41 HOH HOH . 
G 5 HOH A 22 223 43 HOH HOH . 
G 5 HOH A 23 224 46 HOH HOH . 
G 5 HOH A 24 225 52 HOH HOH . 
G 5 HOH A 25 226 53 HOH HOH . 
G 5 HOH A 26 227 54 HOH HOH . 
G 5 HOH A 27 228 56 HOH HOH . 
G 5 HOH A 28 229 58 HOH HOH . 
G 5 HOH A 29 230 59 HOH HOH . 
G 5 HOH A 30 231 62 HOH HOH . 
G 5 HOH A 31 232 65 HOH HOH . 
G 5 HOH A 32 233 66 HOH HOH . 
G 5 HOH A 33 234 69 HOH HOH . 
G 5 HOH A 34 235 72 HOH HOH . 
G 5 HOH A 35 236 73 HOH HOH . 
G 5 HOH A 36 237 75 HOH HOH . 
G 5 HOH A 37 238 78 HOH HOH . 
G 5 HOH A 38 239 80 HOH HOH . 
G 5 HOH A 39 240 83 HOH HOH . 
G 5 HOH A 40 241 84 HOH HOH . 
G 5 HOH A 41 242 85 HOH HOH . 
G 5 HOH A 42 243 86 HOH HOH . 
G 5 HOH A 43 244 88 HOH HOH . 
G 5 HOH A 44 245 89 HOH HOH . 
G 5 HOH A 45 246 91 HOH HOH . 
G 5 HOH A 46 247 95 HOH HOH . 
G 5 HOH A 47 248 98 HOH HOH . 
G 5 HOH A 48 249 99 HOH HOH . 
G 5 HOH A 49 250 101 HOH HOH . 
G 5 HOH A 50 251 102 HOH HOH . 
G 5 HOH A 51 252 107 HOH HOH . 
G 5 HOH A 52 253 110 HOH HOH . 
G 5 HOH A 53 254 113 HOH HOH . 
G 5 HOH A 54 255 114 HOH HOH . 
G 5 HOH A 55 256 118 HOH HOH . 
G 5 HOH A 56 257 124 HOH HOH . 
G 5 HOH A 57 258 125 HOH HOH . 
G 5 HOH A 58 259 126 HOH HOH . 
G 5 HOH A 59 260 128 HOH HOH . 
G 5 HOH A 60 261 129 HOH HOH . 
G 5 HOH A 61 262 130 HOH HOH . 
G 5 HOH A 62 263 131 HOH HOH . 
G 5 HOH A 63 264 132 HOH HOH . 
G 5 HOH A 64 265 133 HOH HOH . 
G 5 HOH A 65 266 134 HOH HOH . 
G 5 HOH A 66 267 135 HOH HOH . 
G 5 HOH A 67 268 137 HOH HOH . 
G 5 HOH A 68 269 138 HOH HOH . 
G 5 HOH A 69 270 139 HOH HOH . 
G 5 HOH A 70 271 140 HOH HOH . 
G 5 HOH A 71 272 142 HOH HOH . 
G 5 HOH A 72 273 143 HOH HOH . 
G 5 HOH A 73 274 144 HOH HOH . 
G 5 HOH A 74 275 146 HOH HOH . 
G 5 HOH A 75 276 148 HOH HOH . 
G 5 HOH A 76 277 151 HOH HOH . 
G 5 HOH A 77 278 152 HOH HOH . 
G 5 HOH A 78 279 154 HOH HOH . 
G 5 HOH A 79 280 155 HOH HOH . 
G 5 HOH A 80 281 157 HOH HOH . 
G 5 HOH A 81 282 160 HOH HOH . 
G 5 HOH A 82 283 161 HOH HOH . 
G 5 HOH A 83 284 162 HOH HOH . 
G 5 HOH A 84 285 164 HOH HOH . 
G 5 HOH A 85 286 166 HOH HOH . 
G 5 HOH A 86 287 168 HOH HOH . 
G 5 HOH A 87 288 169 HOH HOH . 
G 5 HOH A 88 289 170 HOH HOH . 
G 5 HOH A 89 290 172 HOH HOH . 
G 5 HOH A 90 291 174 HOH HOH . 
G 5 HOH A 91 292 175 HOH HOH . 
G 5 HOH A 92 293 177 HOH HOH . 
G 5 HOH A 93 294 178 HOH HOH . 
G 5 HOH A 94 295 179 HOH HOH . 
G 5 HOH A 95 296 180 HOH HOH . 
H 5 HOH B 1 201 3 HOH HOH . 
H 5 HOH B 2 202 6 HOH HOH . 
H 5 HOH B 3 203 7 HOH HOH . 
H 5 HOH B 4 204 8 HOH HOH . 
H 5 HOH B 5 205 9 HOH HOH . 
H 5 HOH B 6 206 12 HOH HOH . 
H 5 HOH B 7 207 13 HOH HOH . 
H 5 HOH B 8 208 14 HOH HOH . 
H 5 HOH B 9 209 15 HOH HOH . 
H 5 HOH B 10 210 16 HOH HOH . 
H 5 HOH B 11 211 18 HOH HOH . 
H 5 HOH B 12 212 19 HOH HOH . 
H 5 HOH B 13 213 22 HOH HOH . 
H 5 HOH B 14 214 23 HOH HOH . 
H 5 HOH B 15 215 29 HOH HOH . 
H 5 HOH B 16 216 31 HOH HOH . 
H 5 HOH B 17 217 32 HOH HOH . 
H 5 HOH B 18 218 38 HOH HOH . 
H 5 HOH B 19 219 42 HOH HOH . 
H 5 HOH B 20 220 44 HOH HOH . 
H 5 HOH B 21 221 45 HOH HOH . 
H 5 HOH B 22 222 47 HOH HOH . 
H 5 HOH B 23 223 48 HOH HOH . 
H 5 HOH B 24 224 49 HOH HOH . 
H 5 HOH B 25 225 50 HOH HOH . 
H 5 HOH B 26 226 51 HOH HOH . 
H 5 HOH B 27 227 55 HOH HOH . 
H 5 HOH B 28 228 57 HOH HOH . 
H 5 HOH B 29 229 60 HOH HOH . 
H 5 HOH B 30 230 61 HOH HOH . 
H 5 HOH B 31 231 63 HOH HOH . 
H 5 HOH B 32 232 64 HOH HOH . 
H 5 HOH B 33 233 67 HOH HOH . 
H 5 HOH B 34 234 68 HOH HOH . 
H 5 HOH B 35 235 70 HOH HOH . 
H 5 HOH B 36 236 71 HOH HOH . 
H 5 HOH B 37 237 74 HOH HOH . 
H 5 HOH B 38 238 76 HOH HOH . 
H 5 HOH B 39 239 77 HOH HOH . 
H 5 HOH B 40 240 79 HOH HOH . 
H 5 HOH B 41 241 81 HOH HOH . 
H 5 HOH B 42 242 82 HOH HOH . 
H 5 HOH B 43 243 87 HOH HOH . 
H 5 HOH B 44 244 90 HOH HOH . 
H 5 HOH B 45 245 92 HOH HOH . 
H 5 HOH B 46 246 93 HOH HOH . 
H 5 HOH B 47 247 94 HOH HOH . 
H 5 HOH B 48 248 96 HOH HOH . 
H 5 HOH B 49 249 97 HOH HOH . 
H 5 HOH B 50 250 100 HOH HOH . 
H 5 HOH B 51 251 103 HOH HOH . 
H 5 HOH B 52 252 104 HOH HOH . 
H 5 HOH B 53 253 105 HOH HOH . 
H 5 HOH B 54 254 106 HOH HOH . 
H 5 HOH B 55 255 108 HOH HOH . 
H 5 HOH B 56 256 109 HOH HOH . 
H 5 HOH B 57 257 111 HOH HOH . 
H 5 HOH B 58 258 112 HOH HOH . 
H 5 HOH B 59 259 115 HOH HOH . 
H 5 HOH B 60 260 116 HOH HOH . 
H 5 HOH B 61 261 117 HOH HOH . 
H 5 HOH B 62 262 119 HOH HOH . 
H 5 HOH B 63 263 120 HOH HOH . 
H 5 HOH B 64 264 121 HOH HOH . 
H 5 HOH B 65 265 122 HOH HOH . 
H 5 HOH B 66 266 123 HOH HOH . 
H 5 HOH B 67 267 127 HOH HOH . 
H 5 HOH B 68 268 136 HOH HOH . 
H 5 HOH B 69 269 141 HOH HOH . 
H 5 HOH B 70 270 145 HOH HOH . 
H 5 HOH B 71 271 147 HOH HOH . 
H 5 HOH B 72 272 149 HOH HOH . 
H 5 HOH B 73 273 150 HOH HOH . 
H 5 HOH B 74 274 153 HOH HOH . 
H 5 HOH B 75 275 156 HOH HOH . 
H 5 HOH B 76 276 158 HOH HOH . 
H 5 HOH B 77 277 159 HOH HOH . 
H 5 HOH B 78 278 163 HOH HOH . 
H 5 HOH B 79 279 165 HOH HOH . 
H 5 HOH B 80 280 167 HOH HOH . 
H 5 HOH B 81 281 171 HOH HOH . 
H 5 HOH B 82 282 173 HOH HOH . 
H 5 HOH B 83 283 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 29.209 47.643 13.574 1 39.47 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . E 4 30.543 48.066 13.388 1 42.91 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . E 4 28.443 48.878 13.889 1 40.63 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . E 4 28.832 49.326 15.195 1 41.49 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#