data_2HR6 # _model_server_result.job_id ig_zC9yXqq1sr-UUS96LcA _model_server_result.datetime_utc '2024-11-24 03:29:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2HR6 # _exptl.entry_id 2HR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HR6 _cell.length_a 75.049 _cell.length_b 75.049 _cell.length_c 99.936 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 37.5245 64.994341 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -37.5245 64.994341 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O1B DUD . A DUD 777 1_555 B MN MN . A MN 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc2 C O1A DUD . A DUD 777 1_555 B MN MN . A MN 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 B MN MN . A MN 997 1_555 E O HOH . A HOH 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 B MN MN . A MN 997 1_555 E O HOH . A HOH 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 B MN MN . A MN 997 1_555 E O HOH . A HOH 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc6 B MN MN . A MN 997 1_555 E O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 122 n n C1 C2 EDO sing 123 n n C1 H11 EDO sing 124 n n C1 H12 EDO sing 125 n n O1 HO1 EDO sing 126 n n C2 O2 EDO sing 127 n n C2 H21 EDO sing 128 n n C2 H22 EDO sing 129 n n O2 HO2 EDO sing 130 n n # _atom_sites.entry_id 2HR6 _atom_sites.fract_transf_matrix[1][1] 0.013325 _atom_sites.fract_transf_matrix[1][2] 0.007693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 997 997 MN MN . C 3 DUD A 1 777 777 DUD DUD . D 4 EDO A 1 301 1 EDO EDO . E 5 HOH A 1 998 1 HOH HOH . E 5 HOH A 2 999 2 HOH HOH . E 5 HOH A 3 1000 3 HOH HOH . E 5 HOH A 4 1001 4 HOH HOH . E 5 HOH A 5 1002 5 HOH HOH . E 5 HOH A 6 1003 6 HOH HOH . E 5 HOH A 7 1004 7 HOH HOH . E 5 HOH A 8 1005 8 HOH HOH . E 5 HOH A 9 1006 9 HOH HOH . E 5 HOH A 10 1007 10 HOH HOH . E 5 HOH A 11 1008 11 HOH HOH . E 5 HOH A 12 1009 12 HOH HOH . E 5 HOH A 13 1010 13 HOH HOH . E 5 HOH A 14 1011 14 HOH HOH . E 5 HOH A 15 1012 15 HOH HOH . E 5 HOH A 16 1013 16 HOH HOH . E 5 HOH A 17 1014 18 HOH HOH . E 5 HOH A 18 1015 19 HOH HOH . E 5 HOH A 19 1016 20 HOH HOH . E 5 HOH A 20 1017 21 HOH HOH . E 5 HOH A 21 1018 22 HOH HOH . E 5 HOH A 22 1019 23 HOH HOH . E 5 HOH A 23 1020 24 HOH HOH . E 5 HOH A 24 1021 25 HOH HOH . E 5 HOH A 25 1022 26 HOH HOH . E 5 HOH A 26 1023 27 HOH HOH . E 5 HOH A 27 1024 28 HOH HOH . E 5 HOH A 28 1025 29 HOH HOH . E 5 HOH A 29 1026 30 HOH HOH . E 5 HOH A 30 1027 31 HOH HOH . E 5 HOH A 31 1028 32 HOH HOH . E 5 HOH A 32 1029 33 HOH HOH . E 5 HOH A 33 1030 34 HOH HOH . E 5 HOH A 34 1031 35 HOH HOH . E 5 HOH A 35 1032 36 HOH HOH . E 5 HOH A 36 1033 37 HOH HOH . E 5 HOH A 37 1034 38 HOH HOH . E 5 HOH A 38 1035 39 HOH HOH . E 5 HOH A 39 1036 40 HOH HOH . E 5 HOH A 40 1037 41 HOH HOH . E 5 HOH A 41 1038 42 HOH HOH . E 5 HOH A 42 1039 43 HOH HOH . E 5 HOH A 43 1040 44 HOH HOH . E 5 HOH A 44 1041 45 HOH HOH . E 5 HOH A 45 1042 46 HOH HOH . E 5 HOH A 46 1043 47 HOH HOH . E 5 HOH A 47 1044 48 HOH HOH . E 5 HOH A 48 1045 49 HOH HOH . E 5 HOH A 49 1046 50 HOH HOH . E 5 HOH A 50 1047 52 HOH HOH . E 5 HOH A 51 1048 53 HOH HOH . E 5 HOH A 52 1049 54 HOH HOH . E 5 HOH A 53 1050 55 HOH HOH . E 5 HOH A 54 1051 56 HOH HOH . E 5 HOH A 55 1052 57 HOH HOH . E 5 HOH A 56 1053 58 HOH HOH . E 5 HOH A 57 1054 59 HOH HOH . E 5 HOH A 58 1055 60 HOH HOH . E 5 HOH A 59 1056 61 HOH HOH . E 5 HOH A 60 1057 62 HOH HOH . E 5 HOH A 61 1058 63 HOH HOH . E 5 HOH A 62 1059 64 HOH HOH . E 5 HOH A 63 1060 65 HOH HOH . E 5 HOH A 64 1061 66 HOH HOH . E 5 HOH A 65 1062 68 HOH HOH . E 5 HOH A 66 1063 69 HOH HOH . E 5 HOH A 67 1064 70 HOH HOH . E 5 HOH A 68 1065 72 HOH HOH . E 5 HOH A 69 1066 75 HOH HOH . E 5 HOH A 70 1067 76 HOH HOH . E 5 HOH A 71 1068 77 HOH HOH . E 5 HOH A 72 1069 78 HOH HOH . E 5 HOH A 73 1070 79 HOH HOH . E 5 HOH A 74 1071 80 HOH HOH . E 5 HOH A 75 1072 81 HOH HOH . E 5 HOH A 76 1073 82 HOH HOH . E 5 HOH A 77 1074 83 HOH HOH . E 5 HOH A 78 1075 85 HOH HOH . E 5 HOH A 79 1076 86 HOH HOH . E 5 HOH A 80 1077 87 HOH HOH . E 5 HOH A 81 1078 88 HOH HOH . E 5 HOH A 82 1079 89 HOH HOH . E 5 HOH A 83 1080 90 HOH HOH . E 5 HOH A 84 1081 91 HOH HOH . E 5 HOH A 85 1082 93 HOH HOH . E 5 HOH A 86 1083 94 HOH HOH . E 5 HOH A 87 1084 95 HOH HOH . E 5 HOH A 88 1085 96 HOH HOH . E 5 HOH A 89 1086 97 HOH HOH . E 5 HOH A 90 1087 99 HOH HOH . E 5 HOH A 91 1088 101 HOH HOH . E 5 HOH A 92 1089 102 HOH HOH . E 5 HOH A 93 1090 103 HOH HOH . E 5 HOH A 94 1091 104 HOH HOH . E 5 HOH A 95 1092 106 HOH HOH . E 5 HOH A 96 1093 107 HOH HOH . E 5 HOH A 97 1094 109 HOH HOH . E 5 HOH A 98 1095 110 HOH HOH . E 5 HOH A 99 1096 111 HOH HOH . E 5 HOH A 100 1097 112 HOH HOH . E 5 HOH A 101 1098 113 HOH HOH . E 5 HOH A 102 1099 114 HOH HOH . E 5 HOH A 103 1100 115 HOH HOH . E 5 HOH A 104 1101 117 HOH HOH . E 5 HOH A 105 1102 118 HOH HOH . E 5 HOH A 106 1103 119 HOH HOH . E 5 HOH A 107 1104 123 HOH HOH . E 5 HOH A 108 1105 125 HOH HOH . E 5 HOH A 109 1106 127 HOH HOH . E 5 HOH A 110 1107 128 HOH HOH . E 5 HOH A 111 1108 130 HOH HOH . E 5 HOH A 112 1109 132 HOH HOH . E 5 HOH A 113 1110 134 HOH HOH . E 5 HOH A 114 1111 137 HOH HOH . E 5 HOH A 115 1112 138 HOH HOH . E 5 HOH A 116 1113 139 HOH HOH . E 5 HOH A 117 1114 141 HOH HOH . E 5 HOH A 118 1115 146 HOH HOH . E 5 HOH A 119 1116 147 HOH HOH . E 5 HOH A 120 1117 149 HOH HOH . E 5 HOH A 121 1118 150 HOH HOH . E 5 HOH A 122 1119 151 HOH HOH . E 5 HOH A 123 1120 154 HOH HOH . E 5 HOH A 124 1121 155 HOH HOH . E 5 HOH A 125 1122 156 HOH HOH . E 5 HOH A 126 1123 159 HOH HOH . E 5 HOH A 127 1124 160 HOH HOH . E 5 HOH A 128 1125 161 HOH HOH . E 5 HOH A 129 1126 162 HOH HOH . E 5 HOH A 130 1127 163 HOH HOH . E 5 HOH A 131 1128 167 HOH HOH . E 5 HOH A 132 1129 170 HOH HOH . E 5 HOH A 133 1130 172 HOH HOH . E 5 HOH A 134 1131 175 HOH HOH . E 5 HOH A 135 1132 176 HOH HOH . E 5 HOH A 136 1133 177 HOH HOH . E 5 HOH A 137 1134 178 HOH HOH . E 5 HOH A 138 1135 179 HOH HOH . E 5 HOH A 139 1136 180 HOH HOH . E 5 HOH A 140 1137 183 HOH HOH . E 5 HOH A 141 1138 187 HOH HOH . E 5 HOH A 142 1139 188 HOH HOH . E 5 HOH A 143 1140 189 HOH HOH . E 5 HOH A 144 1141 191 HOH HOH . E 5 HOH A 145 1142 193 HOH HOH . E 5 HOH A 146 1143 197 HOH HOH . E 5 HOH A 147 1144 198 HOH HOH . E 5 HOH A 148 1145 199 HOH HOH . E 5 HOH A 149 1146 200 HOH HOH . E 5 HOH A 150 1147 202 HOH HOH . E 5 HOH A 151 1148 203 HOH HOH . E 5 HOH A 152 1149 205 HOH HOH . E 5 HOH A 153 1150 206 HOH HOH . E 5 HOH A 154 1151 207 HOH HOH . E 5 HOH A 155 1152 208 HOH HOH . E 5 HOH A 156 1153 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -0.409 28.926 24.561 0.5 13.24 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . D 4 -1.631 28.16 24.45 0.5 27.87 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . D 4 0.633 28.616 25.621 0.5 29.29 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . D 4 1.961 28.297 25.168 0.5 56.18 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 963 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #