data_2HRL # _model_server_result.job_id UitDAB6hO9gNOSTOBwVFnQ _model_server_result.datetime_utc '2025-03-01 05:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hrl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2HRL # _exptl.entry_id 2HRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HRL _cell.length_a 46.021 _cell.length_b 46.021 _cell.length_c 106.474 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 SIA GAL C2 O2 . O3 HO3 . sing 3 ? 2 4 3 SIA SIA C2 O2 . O8 HO8 . sing 4 ? 2 5 2 NGA GAL C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC D 205 GLC 2 n B GAL 2 B 2 GAL D 203 GAL 2 n B SIA 3 B 3 SIA D 202 SIA 2 n B SIA 4 B 4 SIA D 201 SIA 2 n B NGA 5 B 5 NGA D 204 NGA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 46 1_555 A SG CYS 89 A CYS 106 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 29 A CYS 46 1_555 A SG CYS 89 A CYS 106 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 C C1 NAG . A NAG 1 1_555 A ND2 ASN 88 A ASN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 D C6 CEQ . A CEQ 206 1_555 B O1 BGC . B BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale4 B O3 GAL . B GAL 2 1_555 B C2 SIA . B SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 B O4 GAL . B GAL 2 1_555 B C1 NGA . B NGA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 B O8 SIA . B SIA 3 1_555 B C2 SIA . B SIA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 304 n n C1 O1 NAG sing 305 n n C1 O5 NAG sing 306 n n C1 H1 NAG sing 307 n n C2 C3 NAG sing 308 n n C2 N2 NAG sing 309 n n C2 H2 NAG sing 310 n n C3 C4 NAG sing 311 n n C3 O3 NAG sing 312 n n C3 H3 NAG sing 313 n n C4 C5 NAG sing 314 n n C4 O4 NAG sing 315 n n C4 H4 NAG sing 316 n n C5 C6 NAG sing 317 n n C5 O5 NAG sing 318 n n C5 H5 NAG sing 319 n n C6 O6 NAG sing 320 n n C6 H61 NAG sing 321 n n C6 H62 NAG sing 322 n n C7 C8 NAG sing 323 n n C7 N2 NAG sing 324 n n C7 O7 NAG doub 325 n n C8 H81 NAG sing 326 n n C8 H82 NAG sing 327 n n C8 H83 NAG sing 328 n n N2 HN2 NAG sing 329 n n O1 HO1 NAG sing 330 n n O3 HO3 NAG sing 331 n n O4 HO4 NAG sing 332 n n O6 HO6 NAG sing 333 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2HRL _atom_sites.fract_transf_matrix[1][1] 0.021729 _atom_sites.fract_transf_matrix[1][2] 0.012545 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1 1 NAG NAG . D 4 CEQ A 1 206 206 CEQ TMS . E 5 HOH A 1 207 1 HOH HOH . E 5 HOH A 2 208 2 HOH HOH . E 5 HOH A 3 209 4 HOH HOH . E 5 HOH A 4 210 5 HOH HOH . E 5 HOH A 5 211 6 HOH HOH . E 5 HOH A 6 212 8 HOH HOH . E 5 HOH A 7 213 9 HOH HOH . E 5 HOH A 8 214 10 HOH HOH . E 5 HOH A 9 215 11 HOH HOH . E 5 HOH A 10 216 12 HOH HOH . E 5 HOH A 11 217 13 HOH HOH . E 5 HOH A 12 218 14 HOH HOH . E 5 HOH A 13 219 15 HOH HOH . E 5 HOH A 14 220 17 HOH HOH . E 5 HOH A 15 221 19 HOH HOH . E 5 HOH A 16 222 20 HOH HOH . E 5 HOH A 17 223 21 HOH HOH . E 5 HOH A 18 224 22 HOH HOH . E 5 HOH A 19 225 26 HOH HOH . E 5 HOH A 20 226 27 HOH HOH . E 5 HOH A 21 227 28 HOH HOH . E 5 HOH A 22 228 29 HOH HOH . E 5 HOH A 23 229 31 HOH HOH . E 5 HOH A 24 230 32 HOH HOH . E 5 HOH A 25 231 36 HOH HOH . E 5 HOH A 26 232 38 HOH HOH . E 5 HOH A 27 233 39 HOH HOH . E 5 HOH A 28 234 40 HOH HOH . E 5 HOH A 29 235 41 HOH HOH . E 5 HOH A 30 236 45 HOH HOH . E 5 HOH A 31 237 46 HOH HOH . E 5 HOH A 32 238 47 HOH HOH . E 5 HOH A 33 239 56 HOH HOH . E 5 HOH A 34 240 57 HOH HOH . E 5 HOH A 35 241 59 HOH HOH . E 5 HOH A 36 242 60 HOH HOH . E 5 HOH A 37 243 61 HOH HOH . E 5 HOH A 38 244 62 HOH HOH . E 5 HOH A 39 245 63 HOH HOH . E 5 HOH A 40 246 64 HOH HOH . E 5 HOH A 41 247 65 HOH HOH . E 5 HOH A 42 248 66 HOH HOH . E 5 HOH A 43 249 67 HOH HOH . E 5 HOH A 44 250 68 HOH HOH . E 5 HOH A 45 251 69 HOH HOH . E 5 HOH A 46 252 70 HOH HOH . E 5 HOH A 47 253 71 HOH HOH . E 5 HOH A 48 254 72 HOH HOH . E 5 HOH A 49 255 73 HOH HOH . E 5 HOH A 50 256 74 HOH HOH . E 5 HOH A 51 257 75 HOH HOH . E 5 HOH A 52 258 76 HOH HOH . E 5 HOH A 53 259 77 HOH HOH . E 5 HOH A 54 260 78 HOH HOH . E 5 HOH A 55 261 79 HOH HOH . E 5 HOH A 56 262 80 HOH HOH . E 5 HOH A 57 263 81 HOH HOH . E 5 HOH A 58 264 82 HOH HOH . E 5 HOH A 59 265 83 HOH HOH . E 5 HOH A 60 266 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 42.724 18.079 2.527 1 30.41 ? C1 NAG 1 A 1 HETATM 2 C C2 NAG . . . C 3 44.11 17.412 2.473 1 33.23 ? C2 NAG 1 A 1 HETATM 3 C C3 NAG . . . C 3 44.662 17.226 1.049 1 34.29 ? C3 NAG 1 A 1 HETATM 4 C C4 NAG . . . C 3 43.598 16.838 0.019 1 34.73 ? C4 NAG 1 A 1 HETATM 5 C C5 NAG . . . C 3 42.293 17.607 0.284 1 32.88 ? C5 NAG 1 A 1 HETATM 6 C C6 NAG . . . C 3 41.186 17.17 -0.664 1 33.83 ? C6 NAG 1 A 1 HETATM 7 C C7 NAG . . . C 3 45.886 17.639 4.135 1 36.74 ? C7 NAG 1 A 1 HETATM 8 C C8 NAG . . . C 3 46.794 18.567 4.889 1 36.66 ? C8 NAG 1 A 1 HETATM 9 N N2 NAG . . . C 3 45.054 18.197 3.251 1 35.05 ? N2 NAG 1 A 1 HETATM 10 O O3 NAG . . . C 3 45.672 16.227 1.049 1 36.54 ? O3 NAG 1 A 1 HETATM 11 O O4 NAG . . . C 3 44.118 17.098 -1.281 1 34.51 ? O4 NAG 1 A 1 HETATM 12 O O5 NAG . . . C 3 41.872 17.402 1.626 1 30.37 ? O5 NAG 1 A 1 HETATM 13 O O6 NAG . . . C 3 40.862 15.821 -0.4 1 36.52 ? O6 NAG 1 A 1 HETATM 14 O O7 NAG . . . C 3 45.938 16.428 4.351 1 37.85 ? O7 NAG 1 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #