data_2HSD # _model_server_result.job_id WUhE64YymYLTXR4GYhmPOA _model_server_result.datetime_utc '2024-12-03 14:03:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":256}' # _entry.id 2HSD # _exptl.entry_id 2HSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HSD _cell.length_a 106.2 _cell.length_b 106.2 _cell.length_c 203.8 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 222 n n PA O2A NAD sing 223 n n PA O5B NAD sing 224 n n PA O3 NAD sing 225 n n O2A HOA2 NAD sing 226 n n O5B C5B NAD sing 227 n n C5B C4B NAD sing 228 n n C5B H51A NAD sing 229 n n C5B H52A NAD sing 230 n n C4B O4B NAD sing 231 n n C4B C3B NAD sing 232 n n C4B H4B NAD sing 233 n n O4B C1B NAD sing 234 n n C3B O3B NAD sing 235 n n C3B C2B NAD sing 236 n n C3B H3B NAD sing 237 n n O3B HO3A NAD sing 238 n n C2B O2B NAD sing 239 n n C2B C1B NAD sing 240 n n C2B H2B NAD sing 241 n n O2B HO2A NAD sing 242 n n C1B N9A NAD sing 243 n n C1B H1B NAD sing 244 n n N9A C8A NAD sing 245 n y N9A C4A NAD sing 246 n y C8A N7A NAD doub 247 n y C8A H8A NAD sing 248 n n N7A C5A NAD sing 249 n y C5A C6A NAD sing 250 n y C5A C4A NAD doub 251 n y C6A N6A NAD sing 252 n n C6A N1A NAD doub 253 n y N6A H61A NAD sing 254 n n N6A H62A NAD sing 255 n n N1A C2A NAD sing 256 n y C2A N3A NAD doub 257 n y C2A H2A NAD sing 258 n n N3A C4A NAD sing 259 n y O3 PN NAD sing 260 n n PN O1N NAD doub 261 n n PN O2N NAD sing 262 n n PN O5D NAD sing 263 n n O5D C5D NAD sing 264 n n C5D C4D NAD sing 265 n n C5D H51N NAD sing 266 n n C5D H52N NAD sing 267 n n C4D O4D NAD sing 268 n n C4D C3D NAD sing 269 n n C4D H4D NAD sing 270 n n O4D C1D NAD sing 271 n n C3D O3D NAD sing 272 n n C3D C2D NAD sing 273 n n C3D H3D NAD sing 274 n n O3D HO3N NAD sing 275 n n C2D O2D NAD sing 276 n n C2D C1D NAD sing 277 n n C2D H2D NAD sing 278 n n O2D HO2N NAD sing 279 n n C1D N1N NAD sing 280 n n C1D H1D NAD sing 281 n n N1N C2N NAD sing 282 n y N1N C6N NAD doub 283 n y C2N C3N NAD doub 284 n y C2N H2N NAD sing 285 n n C3N C7N NAD sing 286 n n C3N C4N NAD sing 287 n y C7N O7N NAD doub 288 n n C7N N7N NAD sing 289 n n N7N H71N NAD sing 290 n n N7N H72N NAD sing 291 n n C4N C5N NAD doub 292 n y C4N H4N NAD sing 293 n n C5N C6N NAD sing 294 n y C5N H5N NAD sing 295 n n C6N H6N NAD sing 296 n n # _atom_sites.entry_id 2HSD _atom_sites.fract_transf_matrix[1][1] 0.009416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 256 256 NAD NAD . F 2 NAD B 1 256 256 NAD NAD . G 2 NAD C 1 256 256 NAD NAD . H 2 NAD D 1 256 256 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 73.492 -12.042 90.641 1 72.57 ? PA NAD 256 A 1 HETATM 2 O O1A NAD . . . E 2 72.267 -11.233 90.4 1 72.7 ? O1A NAD 256 A 1 HETATM 3 O O2A NAD . . . E 2 73.338 -13.373 91.305 1 70.45 ? O2A NAD 256 A 1 HETATM 4 O O5B NAD . . . E 2 74.546 -11.118 91.477 1 66.35 ? O5B NAD 256 A 1 HETATM 5 C C5B NAD . . . E 2 74.908 -9.782 91.065 1 53.32 ? C5B NAD 256 A 1 HETATM 6 C C4B NAD . . . E 2 74.309 -8.692 91.944 1 44.28 ? C4B NAD 256 A 1 HETATM 7 O O4B NAD . . . E 2 73.454 -7.732 91.281 1 41.23 ? O4B NAD 256 A 1 HETATM 8 C C3B NAD . . . E 2 73.556 -9.172 93.189 1 39.66 ? C3B NAD 256 A 1 HETATM 9 O O3B NAD . . . E 2 74.383 -9.249 94.354 1 32.91 ? O3B NAD 256 A 1 HETATM 10 C C2B NAD . . . E 2 72.465 -8.124 93.343 1 36.68 ? C2B NAD 256 A 1 HETATM 11 O O2B NAD . . . E 2 72.268 -7.788 94.711 1 31.7 ? O2B NAD 256 A 1 HETATM 12 C C1B NAD . . . E 2 73.014 -7.024 92.455 1 37.4 ? C1B NAD 256 A 1 HETATM 13 N N9A NAD . . . E 2 72.14 -5.841 92.348 1 34.35 ? N9A NAD 256 A 1 HETATM 14 C C8A NAD . . . E 2 70.882 -5.773 91.863 1 31.8 ? C8A NAD 256 A 1 HETATM 15 N N7A NAD . . . E 2 70.377 -4.527 91.948 1 30.69 ? N7A NAD 256 A 1 HETATM 16 C C5A NAD . . . E 2 71.371 -3.851 92.514 1 30.75 ? C5A NAD 256 A 1 HETATM 17 C C6A NAD . . . E 2 71.34 -2.487 92.801 1 25.21 ? C6A NAD 256 A 1 HETATM 18 N N6A NAD . . . E 2 70.25 -1.781 92.563 1 16.93 ? N6A NAD 256 A 1 HETATM 19 N N1A NAD . . . E 2 72.46 -1.961 93.366 1 28.35 ? N1A NAD 256 A 1 HETATM 20 C C2A NAD . . . E 2 73.545 -2.725 93.628 1 29.57 ? C2A NAD 256 A 1 HETATM 21 N N3A NAD . . . E 2 73.572 -4.044 93.342 1 32.45 ? N3A NAD 256 A 1 HETATM 22 C C4A NAD . . . E 2 72.485 -4.635 92.782 1 32.2 ? C4A NAD 256 A 1 HETATM 23 O O3 NAD . . . E 2 74.22 -12.276 89.212 1 68.27 ? O3 NAD 256 A 1 HETATM 24 P PN NAD . . . E 2 75.708 -12.558 88.704 1 63.02 ? PN NAD 256 A 1 HETATM 25 O O1N NAD . . . E 2 75.764 -13.959 88.215 1 65.16 ? O1N NAD 256 A 1 HETATM 26 O O2N NAD . . . E 2 76.715 -12.136 89.703 1 64.2 ? O2N NAD 256 A 1 HETATM 27 O O5D NAD . . . E 2 75.836 -11.582 87.442 1 65.47 ? O5D NAD 256 A 1 HETATM 28 C C5D NAD . . . E 2 75.331 -10.248 87.528 1 66.94 ? C5D NAD 256 A 1 HETATM 29 C C4D NAD . . . E 2 75.484 -9.483 86.227 1 70.9 ? C4D NAD 256 A 1 HETATM 30 O O4D NAD . . . E 2 75.951 -10.364 85.195 1 75.75 ? O4D NAD 256 A 1 HETATM 31 C C3D NAD . . . E 2 74.125 -8.952 85.789 1 72.56 ? C3D NAD 256 A 1 HETATM 32 O O3D NAD . . . E 2 74.193 -7.773 84.959 1 69.2 ? O3D NAD 256 A 1 HETATM 33 C C2D NAD . . . E 2 73.61 -10.134 85 1 74.26 ? C2D NAD 256 A 1 HETATM 34 O O2D NAD . . . E 2 72.517 -9.66 84.225 1 74.78 ? O2D NAD 256 A 1 HETATM 35 C C1D NAD . . . E 2 74.886 -10.431 84.22 1 77.08 ? C1D NAD 256 A 1 HETATM 36 N N1N NAD . . . E 2 74.862 -11.712 83.477 1 79.14 ? N1N NAD 256 A 1 HETATM 37 C C2N NAD . . . E 2 74.834 -12.949 84.144 1 81.78 ? C2N NAD 256 A 1 HETATM 38 C C3N NAD . . . E 2 74.808 -14.14 83.413 1 84.13 ? C3N NAD 256 A 1 HETATM 39 C C7N NAD . . . E 2 74.789 -15.498 84.123 1 83.7 ? C7N NAD 256 A 1 HETATM 40 O O7N NAD . . . E 2 74.668 -16.551 83.495 1 79.16 ? O7N NAD 256 A 1 HETATM 41 N N7N NAD . . . E 2 74.932 -15.458 85.447 1 85.12 ? N7N NAD 256 A 1 HETATM 42 C C4N NAD . . . E 2 74.799 -14.099 82.018 1 84.24 ? C4N NAD 256 A 1 HETATM 43 C C5N NAD . . . E 2 74.822 -12.874 81.356 1 83.33 ? C5N NAD 256 A 1 HETATM 44 C C6N NAD . . . E 2 74.864 -11.682 82.078 1 80.67 ? C6N NAD 256 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #