data_2HSD # _model_server_result.job_id VGYqZ6yxuMyLe8bYWGwj2g _model_server_result.datetime_utc '2024-12-03 14:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":256}' # _entry.id 2HSD # _exptl.entry_id 2HSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HSD _cell.length_a 106.2 _cell.length_b 106.2 _cell.length_c 203.8 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 222 n n PA O2A NAD sing 223 n n PA O5B NAD sing 224 n n PA O3 NAD sing 225 n n O2A HOA2 NAD sing 226 n n O5B C5B NAD sing 227 n n C5B C4B NAD sing 228 n n C5B H51A NAD sing 229 n n C5B H52A NAD sing 230 n n C4B O4B NAD sing 231 n n C4B C3B NAD sing 232 n n C4B H4B NAD sing 233 n n O4B C1B NAD sing 234 n n C3B O3B NAD sing 235 n n C3B C2B NAD sing 236 n n C3B H3B NAD sing 237 n n O3B HO3A NAD sing 238 n n C2B O2B NAD sing 239 n n C2B C1B NAD sing 240 n n C2B H2B NAD sing 241 n n O2B HO2A NAD sing 242 n n C1B N9A NAD sing 243 n n C1B H1B NAD sing 244 n n N9A C8A NAD sing 245 n y N9A C4A NAD sing 246 n y C8A N7A NAD doub 247 n y C8A H8A NAD sing 248 n n N7A C5A NAD sing 249 n y C5A C6A NAD sing 250 n y C5A C4A NAD doub 251 n y C6A N6A NAD sing 252 n n C6A N1A NAD doub 253 n y N6A H61A NAD sing 254 n n N6A H62A NAD sing 255 n n N1A C2A NAD sing 256 n y C2A N3A NAD doub 257 n y C2A H2A NAD sing 258 n n N3A C4A NAD sing 259 n y O3 PN NAD sing 260 n n PN O1N NAD doub 261 n n PN O2N NAD sing 262 n n PN O5D NAD sing 263 n n O5D C5D NAD sing 264 n n C5D C4D NAD sing 265 n n C5D H51N NAD sing 266 n n C5D H52N NAD sing 267 n n C4D O4D NAD sing 268 n n C4D C3D NAD sing 269 n n C4D H4D NAD sing 270 n n O4D C1D NAD sing 271 n n C3D O3D NAD sing 272 n n C3D C2D NAD sing 273 n n C3D H3D NAD sing 274 n n O3D HO3N NAD sing 275 n n C2D O2D NAD sing 276 n n C2D C1D NAD sing 277 n n C2D H2D NAD sing 278 n n O2D HO2N NAD sing 279 n n C1D N1N NAD sing 280 n n C1D H1D NAD sing 281 n n N1N C2N NAD sing 282 n y N1N C6N NAD doub 283 n y C2N C3N NAD doub 284 n y C2N H2N NAD sing 285 n n C3N C7N NAD sing 286 n n C3N C4N NAD sing 287 n y C7N O7N NAD doub 288 n n C7N N7N NAD sing 289 n n N7N H71N NAD sing 290 n n N7N H72N NAD sing 291 n n C4N C5N NAD doub 292 n y C4N H4N NAD sing 293 n n C5N C6N NAD sing 294 n y C5N H5N NAD sing 295 n n C6N H6N NAD sing 296 n n # _atom_sites.entry_id 2HSD _atom_sites.fract_transf_matrix[1][1] 0.009416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 256 256 NAD NAD . F 2 NAD B 1 256 256 NAD NAD . G 2 NAD C 1 256 256 NAD NAD . H 2 NAD D 1 256 256 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . H 2 104.912 -8.945 59.173 1 65.4 ? PA NAD 256 D 1 HETATM 2 O O1A NAD . . . H 2 104.406 -8.823 57.78 1 68.36 ? O1A NAD 256 D 1 HETATM 3 O O2A NAD . . . H 2 106.255 -8.383 59.482 1 63.42 ? O2A NAD 256 D 1 HETATM 4 O O5B NAD . . . H 2 104.873 -10.518 59.562 1 59.5 ? O5B NAD 256 D 1 HETATM 5 C C5B NAD . . . H 2 104.03 -11.463 58.875 1 46.72 ? C5B NAD 256 D 1 HETATM 6 C C4B NAD . . . H 2 104.869 -12.714 58.695 1 39.39 ? C4B NAD 256 D 1 HETATM 7 O O4B NAD . . . H 2 104.214 -13.591 57.77 1 34.38 ? O4B NAD 256 D 1 HETATM 8 C C3B NAD . . . H 2 106.264 -12.465 58.094 1 37.7 ? C3B NAD 256 D 1 HETATM 9 O O3B NAD . . . H 2 107.338 -12.931 58.933 1 33.49 ? O3B NAD 256 D 1 HETATM 10 C C2B NAD . . . H 2 106.18 -13.145 56.72 1 36.31 ? C2B NAD 256 D 1 HETATM 11 O O2B NAD . . . H 2 107.404 -13.453 56.034 1 34.29 ? O2B NAD 256 D 1 HETATM 12 C C1B NAD . . . H 2 105.309 -14.294 57.135 1 30.14 ? C1B NAD 256 D 1 HETATM 13 N N9A NAD . . . H 2 104.801 -15.093 56.023 1 24.9 ? N9A NAD 256 D 1 HETATM 14 C C8A NAD . . . H 2 104.326 -14.635 54.846 1 25.27 ? C8A NAD 256 D 1 HETATM 15 N N7A NAD . . . H 2 103.922 -15.632 54.055 1 20.35 ? N7A NAD 256 D 1 HETATM 16 C C5A NAD . . . H 2 104.168 -16.695 54.807 1 20.39 ? C5A NAD 256 D 1 HETATM 17 C C6A NAD . . . H 2 103.91 -17.989 54.395 1 17.39 ? C6A NAD 256 D 1 HETATM 18 N N6A NAD . . . H 2 103.649 -18.22 53.106 1 5.1 ? N6A NAD 256 D 1 HETATM 19 N N1A NAD . . . H 2 104.213 -18.945 55.309 1 14.75 ? N1A NAD 256 D 1 HETATM 20 C C2A NAD . . . H 2 104.771 -18.672 56.498 1 10.39 ? C2A NAD 256 D 1 HETATM 21 N N3A NAD . . . H 2 105.043 -17.426 56.883 1 14.43 ? N3A NAD 256 D 1 HETATM 22 C C4A NAD . . . H 2 104.725 -16.413 56.04 1 22.7 ? C4A NAD 256 D 1 HETATM 23 O O3 NAD . . . H 2 103.778 -8.276 60.151 1 69.12 ? O3 NAD 256 D 1 HETATM 24 P PN NAD . . . H 2 103.303 -8.297 61.706 1 66.89 ? PN NAD 256 D 1 HETATM 25 O O1N NAD . . . H 2 103.301 -6.946 62.322 1 66.88 ? O1N NAD 256 D 1 HETATM 26 O O2N NAD . . . H 2 103.993 -9.386 62.442 1 69.72 ? O2N NAD 256 D 1 HETATM 27 O O5D NAD . . . H 2 101.785 -8.809 61.614 1 70.41 ? O5D NAD 256 D 1 HETATM 28 C C5D NAD . . . H 2 101.413 -10.19 61.777 1 72.39 ? C5D NAD 256 D 1 HETATM 29 C C4D NAD . . . H 2 99.931 -10.395 61.462 1 75.22 ? C4D NAD 256 D 1 HETATM 30 O O4D NAD . . . H 2 99.161 -9.26 61.937 1 78.14 ? O4D NAD 256 D 1 HETATM 31 C C3D NAD . . . H 2 99.683 -10.505 59.958 1 75.76 ? C3D NAD 256 D 1 HETATM 32 O O3D NAD . . . H 2 98.699 -11.499 59.644 1 69.8 ? O3D NAD 256 D 1 HETATM 33 C C2D NAD . . . H 2 99.283 -9.095 59.527 1 78.19 ? C2D NAD 256 D 1 HETATM 34 O O2D NAD . . . H 2 98.339 -9.241 58.462 1 74.56 ? O2D NAD 256 D 1 HETATM 35 C C1D NAD . . . H 2 98.678 -8.472 60.803 1 80.29 ? C1D NAD 256 D 1 HETATM 36 N N1N NAD . . . H 2 98.959 -7.01 60.997 1 82.95 ? N1N NAD 256 D 1 HETATM 37 C C2N NAD . . . H 2 100.211 -6.431 60.669 1 82.04 ? C2N NAD 256 D 1 HETATM 38 C C3N NAD . . . H 2 100.471 -5.072 60.868 1 81.33 ? C3N NAD 256 D 1 HETATM 39 C C7N NAD . . . H 2 101.849 -4.481 60.486 1 81.36 ? C7N NAD 256 D 1 HETATM 40 O O7N NAD . . . H 2 102.864 -5.177 60.402 1 80.56 ? O7N NAD 256 D 1 HETATM 41 N N7N NAD . . . H 2 101.886 -3.175 60.235 1 78.31 ? N7N NAD 256 D 1 HETATM 42 C C4N NAD . . . H 2 99.454 -4.276 61.407 1 80.92 ? C4N NAD 256 D 1 HETATM 43 C C5N NAD . . . H 2 98.21 -4.828 61.734 1 82.97 ? C5N NAD 256 D 1 HETATM 44 C C6N NAD . . . H 2 97.951 -6.185 61.535 1 82.97 ? C6N NAD 256 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #