data_2HT5 # _model_server_result.job_id 1glhPacipYc6iuLRZM4lcA _model_server_result.datetime_utc '2024-11-23 03:56:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ht5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":472}' # _entry.id 2HT5 # _exptl.entry_id 2HT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HT5 _cell.length_a 90.52 _cell.length_b 90.52 _cell.length_c 108.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 181.04 0 0 3 'crystal symmetry operation' 3_645 -y+1,x-1,z 0 -1 0 1 0 0 0 0 1 90.52 -90.52 0 4 'crystal symmetry operation' 4_665 y+1,-x+1,z 0 1 0 -1 0 0 0 0 1 90.52 90.52 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 92 1_555 A SG CYS 337 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 42 A CYS 124 1_555 A SG CYS 47 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 102 A CYS 183 1_555 A SG CYS 149 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 151 A CYS 232 1_555 A SG CYS 156 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 197 A CYS 278 1_555 A SG CYS 210 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 A SG CYS 199 A CYS 280 1_555 A SG CYS 208 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 236 A CYS 318 1_555 A SG CYS 255 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 341 A CYS 421 1_555 A SG CYS 366 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A O ASP 212 A ASP 293 1_555 C CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc2 A O GLY 216 A GLY 297 1_555 C CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc3 A OD1 ASP 242 A ASP 324 1_555 C CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A O TYR 264 A TYR 347 1_555 C CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc5 C CA CA . A CA 995 1_555 D O HOH . A HOH 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NDG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NDG sing 237 n n C1 O5 NDG sing 238 n n C1 O1 NDG sing 239 n n C1 H1 NDG sing 240 n n C2 C3 NDG sing 241 n n C2 N2 NDG sing 242 n n C2 H2 NDG sing 243 n n C3 C4 NDG sing 244 n n C3 O3 NDG sing 245 n n C3 H3 NDG sing 246 n n C4 C5 NDG sing 247 n n C4 O4 NDG sing 248 n n C4 H4 NDG sing 249 n n C5 C6 NDG sing 250 n n C5 O5 NDG sing 251 n n C5 H5 NDG sing 252 n n C6 O6 NDG sing 253 n n C6 H61 NDG sing 254 n n C6 H62 NDG sing 255 n n C7 C8 NDG sing 256 n n C7 O7 NDG doub 257 n n C7 N2 NDG sing 258 n n C8 H81 NDG sing 259 n n C8 H82 NDG sing 260 n n C8 H83 NDG sing 261 n n O3 HO3 NDG sing 262 n n O4 HO4 NDG sing 263 n n O6 HO6 NDG sing 264 n n N2 HN2 NDG sing 265 n n O1 HO1 NDG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2HT5 _atom_sites.fract_transf_matrix[1][1] 0.011047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDG A 1 472 156 NDG NAG . C 3 CA A 1 995 995 CA CA . D 4 HOH A 1 996 1 HOH HOH . D 4 HOH A 2 997 2 HOH HOH . D 4 HOH A 3 998 3 HOH HOH . D 4 HOH A 4 999 4 HOH HOH . D 4 HOH A 5 1000 5 HOH HOH . D 4 HOH A 6 1001 6 HOH HOH . D 4 HOH A 7 1002 7 HOH HOH . D 4 HOH A 8 1003 8 HOH HOH . D 4 HOH A 9 1004 9 HOH HOH . D 4 HOH A 10 1005 10 HOH HOH . D 4 HOH A 11 1006 11 HOH HOH . D 4 HOH A 12 1007 12 HOH HOH . D 4 HOH A 13 1008 13 HOH HOH . D 4 HOH A 14 1009 14 HOH HOH . D 4 HOH A 15 1010 15 HOH HOH . D 4 HOH A 16 1011 16 HOH HOH . D 4 HOH A 17 1012 17 HOH HOH . D 4 HOH A 18 1013 18 HOH HOH . D 4 HOH A 19 1014 19 HOH HOH . D 4 HOH A 20 1015 20 HOH HOH . D 4 HOH A 21 1016 21 HOH HOH . D 4 HOH A 22 1017 22 HOH HOH . D 4 HOH A 23 1018 23 HOH HOH . D 4 HOH A 24 1019 24 HOH HOH . D 4 HOH A 25 1020 25 HOH HOH . D 4 HOH A 26 1021 26 HOH HOH . D 4 HOH A 27 1022 27 HOH HOH . D 4 HOH A 28 1023 28 HOH HOH . D 4 HOH A 29 1024 29 HOH HOH . D 4 HOH A 30 1025 30 HOH HOH . D 4 HOH A 31 1026 31 HOH HOH . D 4 HOH A 32 1027 32 HOH HOH . D 4 HOH A 33 1028 33 HOH HOH . D 4 HOH A 34 1029 34 HOH HOH . D 4 HOH A 35 1030 35 HOH HOH . D 4 HOH A 36 1031 36 HOH HOH . D 4 HOH A 37 1032 37 HOH HOH . D 4 HOH A 38 1033 38 HOH HOH . D 4 HOH A 39 1034 39 HOH HOH . D 4 HOH A 40 1035 40 HOH HOH . D 4 HOH A 41 1036 41 HOH HOH . D 4 HOH A 42 1037 42 HOH HOH . D 4 HOH A 43 1038 43 HOH HOH . D 4 HOH A 44 1039 44 HOH HOH . D 4 HOH A 45 1040 45 HOH HOH . D 4 HOH A 46 1041 46 HOH HOH . D 4 HOH A 47 1042 47 HOH HOH . D 4 HOH A 48 1043 48 HOH HOH . D 4 HOH A 49 1044 49 HOH HOH . D 4 HOH A 50 1045 50 HOH HOH . D 4 HOH A 51 1046 51 HOH HOH . D 4 HOH A 52 1047 52 HOH HOH . D 4 HOH A 53 1048 53 HOH HOH . D 4 HOH A 54 1049 54 HOH HOH . D 4 HOH A 55 1050 55 HOH HOH . D 4 HOH A 56 1051 56 HOH HOH . D 4 HOH A 57 1052 57 HOH HOH . D 4 HOH A 58 1053 58 HOH HOH . D 4 HOH A 59 1054 59 HOH HOH . D 4 HOH A 60 1055 60 HOH HOH . D 4 HOH A 61 1056 61 HOH HOH . D 4 HOH A 62 1057 62 HOH HOH . D 4 HOH A 63 1058 63 HOH HOH . D 4 HOH A 64 1059 64 HOH HOH . D 4 HOH A 65 1060 65 HOH HOH . D 4 HOH A 66 1061 66 HOH HOH . D 4 HOH A 67 1062 67 HOH HOH . D 4 HOH A 68 1063 68 HOH HOH . D 4 HOH A 69 1064 69 HOH HOH . D 4 HOH A 70 1065 70 HOH HOH . D 4 HOH A 71 1066 71 HOH HOH . D 4 HOH A 72 1067 72 HOH HOH . D 4 HOH A 73 1068 73 HOH HOH . D 4 HOH A 74 1069 74 HOH HOH . D 4 HOH A 75 1070 75 HOH HOH . D 4 HOH A 76 1071 76 HOH HOH . D 4 HOH A 77 1072 77 HOH HOH . D 4 HOH A 78 1073 78 HOH HOH . D 4 HOH A 79 1074 79 HOH HOH . D 4 HOH A 80 1075 80 HOH HOH . D 4 HOH A 81 1076 81 HOH HOH . D 4 HOH A 82 1077 82 HOH HOH . D 4 HOH A 83 1078 83 HOH HOH . D 4 HOH A 84 1079 84 HOH HOH . D 4 HOH A 85 1080 85 HOH HOH . D 4 HOH A 86 1081 86 HOH HOH . D 4 HOH A 87 1082 87 HOH HOH . D 4 HOH A 88 1083 88 HOH HOH . D 4 HOH A 89 1084 89 HOH HOH . D 4 HOH A 90 1085 90 HOH HOH . D 4 HOH A 91 1086 91 HOH HOH . D 4 HOH A 92 1087 92 HOH HOH . D 4 HOH A 93 1088 93 HOH HOH . D 4 HOH A 94 1089 94 HOH HOH . D 4 HOH A 95 1090 95 HOH HOH . D 4 HOH A 96 1091 96 HOH HOH . D 4 HOH A 97 1092 97 HOH HOH . D 4 HOH A 98 1093 98 HOH HOH . D 4 HOH A 99 1094 99 HOH HOH . D 4 HOH A 100 1095 100 HOH HOH . D 4 HOH A 101 1096 101 HOH HOH . D 4 HOH A 102 1097 102 HOH HOH . D 4 HOH A 103 1098 103 HOH HOH . D 4 HOH A 104 1099 104 HOH HOH . D 4 HOH A 105 1100 105 HOH HOH . D 4 HOH A 106 1101 106 HOH HOH . D 4 HOH A 107 1102 107 HOH HOH . D 4 HOH A 108 1103 108 HOH HOH . D 4 HOH A 109 1104 109 HOH HOH . D 4 HOH A 110 1105 110 HOH HOH . D 4 HOH A 111 1106 111 HOH HOH . D 4 HOH A 112 1107 112 HOH HOH . D 4 HOH A 113 1108 113 HOH HOH . D 4 HOH A 114 1109 114 HOH HOH . D 4 HOH A 115 1110 115 HOH HOH . D 4 HOH A 116 1111 116 HOH HOH . D 4 HOH A 117 1112 117 HOH HOH . D 4 HOH A 118 1113 118 HOH HOH . D 4 HOH A 119 1114 119 HOH HOH . D 4 HOH A 120 1115 120 HOH HOH . D 4 HOH A 121 1116 121 HOH HOH . D 4 HOH A 122 1117 122 HOH HOH . D 4 HOH A 123 1118 123 HOH HOH . D 4 HOH A 124 1119 124 HOH HOH . D 4 HOH A 125 1120 125 HOH HOH . D 4 HOH A 126 1121 126 HOH HOH . D 4 HOH A 127 1122 127 HOH HOH . D 4 HOH A 128 1123 128 HOH HOH . D 4 HOH A 129 1124 129 HOH HOH . D 4 HOH A 130 1125 130 HOH HOH . D 4 HOH A 131 1126 131 HOH HOH . D 4 HOH A 132 1127 132 HOH HOH . D 4 HOH A 133 1128 133 HOH HOH . D 4 HOH A 134 1129 134 HOH HOH . D 4 HOH A 135 1130 135 HOH HOH . D 4 HOH A 136 1131 136 HOH HOH . D 4 HOH A 137 1132 137 HOH HOH . D 4 HOH A 138 1133 138 HOH HOH . D 4 HOH A 139 1134 139 HOH HOH . D 4 HOH A 140 1135 140 HOH HOH . D 4 HOH A 141 1136 141 HOH HOH . D 4 HOH A 142 1137 142 HOH HOH . D 4 HOH A 143 1138 143 HOH HOH . D 4 HOH A 144 1139 144 HOH HOH . D 4 HOH A 145 1140 145 HOH HOH . D 4 HOH A 146 1141 146 HOH HOH . D 4 HOH A 147 1142 147 HOH HOH . D 4 HOH A 148 1143 148 HOH HOH . D 4 HOH A 149 1144 149 HOH HOH . D 4 HOH A 150 1145 150 HOH HOH . D 4 HOH A 151 1146 151 HOH HOH . D 4 HOH A 152 1147 152 HOH HOH . D 4 HOH A 153 1148 153 HOH HOH . D 4 HOH A 154 1149 154 HOH HOH . D 4 HOH A 155 1150 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDG . . . B 2 108.676 9.442 145.847 1 83.07 ? C1 NDG 472 A 1 HETATM 2 C C2 NDG . . . B 2 107.982 8.859 147.084 1 81.88 ? C2 NDG 472 A 1 HETATM 3 C C3 NDG . . . B 2 108.719 9.33 148.34 1 82.38 ? C3 NDG 472 A 1 HETATM 4 C C4 NDG . . . B 2 110.189 8.92 148.253 1 82.61 ? C4 NDG 472 A 1 HETATM 5 C C5 NDG . . . B 2 110.833 9.377 146.918 1 83.18 ? C5 NDG 472 A 1 HETATM 6 C C6 NDG . . . B 2 112.286 8.9 146.734 1 81.94 ? C6 NDG 472 A 1 HETATM 7 C C7 NDG . . . B 2 105.629 8.343 147.22 1 81.31 ? C7 NDG 472 A 1 HETATM 8 C C8 NDG . . . B 2 104.25 8.859 147.605 1 80.41 ? C8 NDG 472 A 1 HETATM 9 O O5 NDG . . . B 2 110.031 8.923 145.779 1 83.2 ? O5 NDG 472 A 1 HETATM 10 O O3 NDG . . . B 2 108.124 8.724 149.482 1 83.01 ? O3 NDG 472 A 1 HETATM 11 O O4 NDG . . . B 2 110.925 9.447 149.349 1 83.34 ? O4 NDG 472 A 1 HETATM 12 O O6 NDG . . . B 2 112.38 7.549 146.292 1 79.83 ? O6 NDG 472 A 1 HETATM 13 O O7 NDG . . . B 2 105.804 7.131 146.984 1 80.65 ? O7 NDG 472 A 1 HETATM 14 N N2 NDG . . . B 2 106.592 9.262 147.14 1 82.43 ? N2 NDG 472 A 1 HETATM 15 O O1 NDG . . . B 2 108.754 10.832 145.977 1 81.5 ? O1 NDG 472 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #