data_2HTO # _model_server_result.job_id oWIQ50Ae8t7YluRVsppWdA _model_server_result.datetime_utc '2025-03-28 13:21:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":13}' # _entry.id 2HTO # _exptl.entry_id 2HTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 203.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUTHENIUM (III) HEXAAMINE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HTO _cell.length_a 17.953 _cell.length_b 30.821 _cell.length_c 44.596 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 1 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'H18 N6 Ru 3' _chem_comp.formula_weight 203.253 _chem_comp.id NRU _chem_comp.mon_nstd_flag . _chem_comp.name 'RUTHENIUM (III) HEXAAMINE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEXAAMINORUTHENIUM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 RU NRU sing 152 n n N1 HN11 NRU sing 153 n n N1 HN1 NRU sing 154 n n N1 HN12 NRU sing 155 n n RU N4 NRU sing 156 n n RU N5 NRU sing 157 n n RU N2 NRU sing 158 n n RU N3 NRU sing 159 n n RU N6 NRU sing 160 n n N4 HN4 NRU sing 161 n n N4 HN41 NRU sing 162 n n N4 HN42 NRU sing 163 n n N5 HN5 NRU sing 164 n n N5 HN51 NRU sing 165 n n N5 HN52 NRU sing 166 n n N2 HN2 NRU sing 167 n n N2 HN21 NRU sing 168 n n N2 HN22 NRU sing 169 n n N3 HN3 NRU sing 170 n n N3 HN31 NRU sing 171 n n N3 HN32 NRU sing 172 n n N6 HN6 NRU sing 173 n n N6 HN61 NRU sing 174 n n N6 HN62 NRU sing 175 n n # _atom_sites.entry_id 2HTO _atom_sites.fract_transf_matrix[1][1] 0.055701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NRU A 1 13 13 NRU NRU . D 4 HOH A 1 15 15 HOH HOH . D 4 HOH A 2 18 18 HOH HOH . D 4 HOH A 3 19 19 HOH HOH . D 4 HOH A 4 21 21 HOH HOH . D 4 HOH A 5 24 24 HOH HOH . D 4 HOH A 6 25 25 HOH HOH . D 4 HOH A 7 26 26 HOH HOH . D 4 HOH A 8 28 28 HOH HOH . D 4 HOH A 9 29 29 HOH HOH . D 4 HOH A 10 33 33 HOH HOH . D 4 HOH A 11 36 36 HOH HOH . D 4 HOH A 12 37 37 HOH HOH . D 4 HOH A 13 38 38 HOH HOH . D 4 HOH A 14 43 43 HOH HOH . D 4 HOH A 15 48 48 HOH HOH . D 4 HOH A 16 54 54 HOH HOH . D 4 HOH A 17 59 59 HOH HOH . D 4 HOH A 18 61 61 HOH HOH . E 4 HOH B 1 14 14 HOH HOH . E 4 HOH B 2 16 16 HOH HOH . E 4 HOH B 3 17 17 HOH HOH . E 4 HOH B 4 20 20 HOH HOH . E 4 HOH B 5 22 22 HOH HOH . E 4 HOH B 6 23 23 HOH HOH . E 4 HOH B 7 27 27 HOH HOH . E 4 HOH B 8 30 30 HOH HOH . E 4 HOH B 9 31 31 HOH HOH . E 4 HOH B 10 32 32 HOH HOH . E 4 HOH B 11 34 34 HOH HOH . E 4 HOH B 12 35 35 HOH HOH . E 4 HOH B 13 39 39 HOH HOH . E 4 HOH B 14 40 40 HOH HOH . E 4 HOH B 15 41 41 HOH HOH . E 4 HOH B 16 42 42 HOH HOH . E 4 HOH B 17 44 44 HOH HOH . E 4 HOH B 18 45 45 HOH HOH . E 4 HOH B 19 46 46 HOH HOH . E 4 HOH B 20 47 47 HOH HOH . E 4 HOH B 21 49 49 HOH HOH . E 4 HOH B 22 50 50 HOH HOH . E 4 HOH B 23 51 51 HOH HOH . E 4 HOH B 24 52 52 HOH HOH . E 4 HOH B 25 53 53 HOH HOH . E 4 HOH B 26 55 55 HOH HOH . E 4 HOH B 27 56 56 HOH HOH . E 4 HOH B 28 57 57 HOH HOH . E 4 HOH B 29 58 58 HOH HOH . E 4 HOH B 30 60 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NRU . . . C 3 -1.585 6.592 -3.511 0.7 28.53 ? N1 NRU 13 A 1 HETATM 2 RU RU NRU . . . C 3 0.289 7.363 -3.918 0.7 30.18 ? RU NRU 13 A 1 HETATM 3 N N4 NRU . . . C 3 1.152 6.125 -2.45 0.7 30.75 ? N4 NRU 13 A 1 HETATM 4 N N5 NRU . . . C 3 0.015 8.988 -2.626 0.7 29.16 ? N5 NRU 13 A 1 HETATM 5 N N2 NRU . . . C 3 2.196 8.093 -4.426 0.7 28.96 ? N2 NRU 13 A 1 HETATM 6 N N3 NRU . . . C 3 -0.665 8.53 -5.39 0.7 27.4 ? N3 NRU 13 A 1 HETATM 7 N N6 NRU . . . C 3 0.533 5.821 -5.299 0.7 32.13 ? N6 NRU 13 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #