data_2HTR # _model_server_result.job_id k62CzF-jeWA3Zo2JIBRDVw _model_server_result.datetime_utc '2024-11-28 20:25:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2htr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1850}' # _entry.id 2HTR # _exptl.entry_id 2HTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.255 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HTR _cell.length_a 90.37 _cell.length_b 90.37 _cell.length_c 111.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1,2,3,4 A,B 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 92 1_555 A SG CYS 337 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 42 A CYS 124 1_555 A SG CYS 47 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 102 A CYS 183 1_555 A SG CYS 149 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 151 A CYS 232 1_555 A SG CYS 156 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 197 A CYS 278 1_555 A SG CYS 210 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 199 A CYS 280 1_555 A SG CYS 208 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 236 A CYS 318 1_555 A SG CYS 255 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 A SG CYS 341 A CYS 421 1_555 A SG CYS 366 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C11 H17 N O8' _chem_comp.formula_weight 291.255 _chem_comp.id DAN _chem_comp.mon_nstd_flag . _chem_comp.name '2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms Neu5Ac2en # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DAN sing 83 n n C1 O1A DAN doub 84 n n C1 O1B DAN sing 85 n n C2 C3 DAN doub 86 n n C2 O6 DAN sing 87 n n C3 C4 DAN sing 88 n n C3 H3 DAN sing 89 n n C4 C5 DAN sing 90 n n C4 O4 DAN sing 91 n n C4 H4 DAN sing 92 n n C5 C6 DAN sing 93 n n C5 N5 DAN sing 94 n n C5 H5 DAN sing 95 n n C6 C7 DAN sing 96 n n C6 O6 DAN sing 97 n n C6 H6 DAN sing 98 n n C7 C8 DAN sing 99 n n C7 O7 DAN sing 100 n n C7 H7 DAN sing 101 n n C8 C9 DAN sing 102 n n C8 O8 DAN sing 103 n n C8 H8 DAN sing 104 n n C9 O9 DAN sing 105 n n C9 H91 DAN sing 106 n n C9 H92 DAN sing 107 n n C10 C11 DAN sing 108 n n C10 N5 DAN sing 109 n n C10 O10 DAN doub 110 n n C11 H111 DAN sing 111 n n C11 H112 DAN sing 112 n n C11 H113 DAN sing 113 n n N5 HN5 DAN sing 114 n n O1B HO1B DAN sing 115 n n O4 HO4 DAN sing 116 n n O7 HO7 DAN sing 117 n n O8 HO8 DAN sing 118 n n O9 HO9 DAN sing 119 n n # _atom_sites.entry_id 2HTR _atom_sites.fract_transf_matrix[1][1] 0.011066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DAN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1850 _pdbx_nonpoly_scheme.auth_seq_num 1850 _pdbx_nonpoly_scheme.pdb_mon_id DAN _pdbx_nonpoly_scheme.auth_mon_id DAN _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DAN . . . B 2 22.089 21.267 18.333 1 18.85 ? C1 DAN 1850 A 1 HETATM 2 C C2 DAN . . . B 2 22.806 20.237 17.648 1 19.1 ? C2 DAN 1850 A 1 HETATM 3 C C3 DAN . . . B 2 22.144 18.902 17.39 1 16.99 ? C3 DAN 1850 A 1 HETATM 4 C C4 DAN . . . B 2 22.872 18.116 16.261 1 17.47 ? C4 DAN 1850 A 1 HETATM 5 C C5 DAN . . . B 2 24.381 18.329 16.303 1 16.25 ? C5 DAN 1850 A 1 HETATM 6 C C6 DAN . . . B 2 24.648 19.838 16.175 1 16.6 ? C6 DAN 1850 A 1 HETATM 7 C C7 DAN . . . B 2 26.133 20.203 16.222 1 16.82 ? C7 DAN 1850 A 1 HETATM 8 C C8 DAN . . . B 2 26.364 21.707 16.077 1 17.45 ? C8 DAN 1850 A 1 HETATM 9 C C9 DAN . . . B 2 27.86 22.084 16.133 1 17.28 ? C9 DAN 1850 A 1 HETATM 10 C C10 DAN . . . B 2 25.66 16.429 15.377 1 12.86 ? C10 DAN 1850 A 1 HETATM 11 C C11 DAN . . . B 2 26.203 15.71 14.168 1 12.48 ? C11 DAN 1850 A 1 HETATM 12 N N5 DAN . . . B 2 24.954 17.547 15.212 1 12.34 ? N5 DAN 1850 A 1 HETATM 13 O O1A DAN . . . B 2 20.837 21.072 18.855 1 19.8 ? O1A DAN 1850 A 1 HETATM 14 O O1B DAN . . . B 2 22.633 22.437 18.466 1 16.63 ? O1B DAN 1850 A 1 HETATM 15 O O4 DAN . . . B 2 22.546 16.728 16.402 1 17.13 ? O4 DAN 1850 A 1 HETATM 16 O O6 DAN . . . B 2 24.014 20.535 17.279 1 18.9 ? O6 DAN 1850 A 1 HETATM 17 O O7 DAN . . . B 2 26.694 19.832 17.483 1 16.53 ? O7 DAN 1850 A 1 HETATM 18 O O8 DAN . . . B 2 25.83 22.148 14.829 1 18.98 ? O8 DAN 1850 A 1 HETATM 19 O O9 DAN . . . B 2 28.657 21.409 15.19 1 19.47 ? O9 DAN 1850 A 1 HETATM 20 O O10 DAN . . . B 2 25.922 15.888 16.611 1 14.13 ? O10 DAN 1850 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #