data_2HTW # _model_server_result.job_id L3giD64slWBUn7UiqbWFsg _model_server_result.datetime_utc '2024-11-26 18:54:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2htw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1850}' # _entry.id 2HTW # _exptl.entry_id 2HTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.255 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HTW _cell.length_a 193.4 _cell.length_b 193.4 _cell.length_c 193.4 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 92 1_555 A SG CYS 338 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 43 A CYS 124 1_555 A SG CYS 48 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 103 A CYS 183 1_555 A SG CYS 150 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 152 A CYS 232 1_555 A SG CYS 157 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 198 A CYS 278 1_555 A SG CYS 211 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 200 A CYS 280 1_555 A SG CYS 209 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 237 A CYS 318 1_555 A SG CYS 254 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 342 A CYS 421 1_555 A SG CYS 367 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C11 H17 N O8' _chem_comp.formula_weight 291.255 _chem_comp.id DAN _chem_comp.mon_nstd_flag . _chem_comp.name '2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms Neu5Ac2en # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DAN sing 83 n n C1 O1A DAN doub 84 n n C1 O1B DAN sing 85 n n C2 C3 DAN doub 86 n n C2 O6 DAN sing 87 n n C3 C4 DAN sing 88 n n C3 H3 DAN sing 89 n n C4 C5 DAN sing 90 n n C4 O4 DAN sing 91 n n C4 H4 DAN sing 92 n n C5 C6 DAN sing 93 n n C5 N5 DAN sing 94 n n C5 H5 DAN sing 95 n n C6 C7 DAN sing 96 n n C6 O6 DAN sing 97 n n C6 H6 DAN sing 98 n n C7 C8 DAN sing 99 n n C7 O7 DAN sing 100 n n C7 H7 DAN sing 101 n n C8 C9 DAN sing 102 n n C8 O8 DAN sing 103 n n C8 H8 DAN sing 104 n n C9 O9 DAN sing 105 n n C9 H91 DAN sing 106 n n C9 H92 DAN sing 107 n n C10 C11 DAN sing 108 n n C10 N5 DAN sing 109 n n C10 O10 DAN doub 110 n n C11 H111 DAN sing 111 n n C11 H112 DAN sing 112 n n C11 H113 DAN sing 113 n n N5 HN5 DAN sing 114 n n O1B HO1B DAN sing 115 n n O4 HO4 DAN sing 116 n n O7 HO7 DAN sing 117 n n O8 HO8 DAN sing 118 n n O9 HO9 DAN sing 119 n n # _atom_sites.entry_id 2HTW _atom_sites.fract_transf_matrix[1][1] 0.005171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DAN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1850 _pdbx_nonpoly_scheme.auth_seq_num 1850 _pdbx_nonpoly_scheme.pdb_mon_id DAN _pdbx_nonpoly_scheme.auth_mon_id DAN _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DAN . . . B 2 2.529 -30.645 -59.295 1 25.26 ? C1 DAN 1850 A 1 HETATM 2 C C2 DAN . . . B 2 1.473 -30.626 -60.242 1 24.51 ? C2 DAN 1850 A 1 HETATM 3 C C3 DAN . . . B 2 0.908 -29.288 -60.62 1 23.33 ? C3 DAN 1850 A 1 HETATM 4 C C4 DAN . . . B 2 -0.106 -29.39 -61.776 1 20.86 ? C4 DAN 1850 A 1 HETATM 5 C C5 DAN . . . B 2 -0.853 -30.702 -61.779 1 20.4 ? C5 DAN 1850 A 1 HETATM 6 C C6 DAN . . . B 2 0.17 -31.849 -61.875 1 21.06 ? C6 DAN 1850 A 1 HETATM 7 C C7 DAN . . . B 2 -0.497 -33.243 -61.895 1 19.13 ? C7 DAN 1850 A 1 HETATM 8 C C8 DAN . . . B 2 0.487 -34.408 -62.011 1 16.87 ? C8 DAN 1850 A 1 HETATM 9 C C9 DAN . . . B 2 -0.237 -35.764 -62.054 1 16 ? C9 DAN 1850 A 1 HETATM 10 C C10 DAN . . . B 2 -3.094 -30.655 -62.738 1 18.19 ? C10 DAN 1850 A 1 HETATM 11 C C11 DAN . . . B 2 -3.989 -30.583 -63.946 1 19.5 ? C11 DAN 1850 A 1 HETATM 12 N N5 DAN . . . B 2 -1.778 -30.64 -62.9 1 18.43 ? N5 DAN 1850 A 1 HETATM 13 O O1A DAN . . . B 2 2.3 -30.819 -57.944 1 25.52 ? O1A DAN 1850 A 1 HETATM 14 O O1B DAN . . . B 2 3.742 -30.47 -59.71 1 21.26 ? O1B DAN 1850 A 1 HETATM 15 O O4 DAN . . . B 2 -1.006 -28.292 -61.671 1 20.13 ? O4 DAN 1850 A 1 HETATM 16 O O6 DAN . . . B 2 1.058 -31.786 -60.713 1 24.44 ? O6 DAN 1850 A 1 HETATM 17 O O7 DAN . . . B 2 -1.235 -33.464 -60.681 1 20.1 ? O7 DAN 1850 A 1 HETATM 18 O O8 DAN . . . B 2 1.259 -34.284 -63.197 1 13.73 ? O8 DAN 1850 A 1 HETATM 19 O O9 DAN . . . B 2 -1.105 -35.902 -63.159 1 15.25 ? O9 DAN 1850 A 1 HETATM 20 O O10 DAN . . . B 2 -3.685 -30.733 -61.495 1 16.53 ? O10 DAN 1850 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #