data_2HUB # _model_server_result.job_id R4zeAzFz0WOfhQmOcpY4JA _model_server_result.datetime_utc '2025-04-28 03:45:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 2HUB # _exptl.entry_id 2HUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HUB _cell.length_a 76.861 _cell.length_b 76.861 _cell.length_c 35.867 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A O GLY 49 A GLY 49 1_555 B NA NA . A NA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc2 A OG1 THR 51 A THR 51 1_555 B NA NA . A NA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc3 A OD2 ASP 66 A ASP 66 1_555 B NA NA . A NA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc4 A NE ARG 68 A ARG 68 1_555 B NA NA . A NA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 92 n n N1 C6 EPE sing 93 n n N1 C9 EPE sing 94 n n C2 C3 EPE sing 95 n n C2 H21 EPE sing 96 n n C2 H22 EPE sing 97 n n C3 N4 EPE sing 98 n n C3 H31 EPE sing 99 n n C3 H32 EPE sing 100 n n N4 C5 EPE sing 101 n n N4 C7 EPE sing 102 n n C5 C6 EPE sing 103 n n C5 H51 EPE sing 104 n n C5 H52 EPE sing 105 n n C6 H61 EPE sing 106 n n C6 H62 EPE sing 107 n n C7 C8 EPE sing 108 n n C7 H71 EPE sing 109 n n C7 H72 EPE sing 110 n n C8 O8 EPE sing 111 n n C8 H81 EPE sing 112 n n C8 H82 EPE sing 113 n n O8 HO8 EPE sing 114 n n C9 C10 EPE sing 115 n n C9 H91 EPE sing 116 n n C9 H92 EPE sing 117 n n C10 S EPE sing 118 n n C10 H101 EPE sing 119 n n C10 H102 EPE sing 120 n n S O1S EPE doub 121 n n S O2S EPE doub 122 n n S O3S EPE sing 123 n n O3S HOS3 EPE sing 124 n n # _atom_sites.entry_id 2HUB _atom_sites.fract_transf_matrix[1][1] 0.01301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 6001 6001 NA NA . C 3 EDO A 1 1001 1001 EDO EDO . D 4 EPE A 1 2001 2001 EPE EPE . E 5 PPI A 1 5001 5001 PPI PPI . F 6 TAR A 1 3001 3001 TAR TAR . G 7 FMT A 1 4001 4001 FMT FMT . H 8 HOH A 1 6002 1 HOH HOH . H 8 HOH A 2 6003 3 HOH HOH . H 8 HOH A 3 6004 5 HOH HOH . H 8 HOH A 4 6005 6 HOH HOH . H 8 HOH A 5 6006 7 HOH HOH . H 8 HOH A 6 6007 8 HOH HOH . H 8 HOH A 7 6008 10 HOH HOH . H 8 HOH A 8 6009 11 HOH HOH . H 8 HOH A 9 6010 12 HOH HOH . H 8 HOH A 10 6011 13 HOH HOH . H 8 HOH A 11 6012 14 HOH HOH . H 8 HOH A 12 6013 15 HOH HOH . H 8 HOH A 13 6014 16 HOH HOH . H 8 HOH A 14 6015 17 HOH HOH . H 8 HOH A 15 6016 18 HOH HOH . H 8 HOH A 16 6017 19 HOH HOH . H 8 HOH A 17 6018 20 HOH HOH . H 8 HOH A 18 6019 21 HOH HOH . H 8 HOH A 19 6020 22 HOH HOH . H 8 HOH A 20 6021 23 HOH HOH . H 8 HOH A 21 6022 24 HOH HOH . H 8 HOH A 22 6023 25 HOH HOH . H 8 HOH A 23 6024 26 HOH HOH . H 8 HOH A 24 6025 27 HOH HOH . H 8 HOH A 25 6026 28 HOH HOH . H 8 HOH A 26 6027 29 HOH HOH . H 8 HOH A 27 6028 30 HOH HOH . H 8 HOH A 28 6029 31 HOH HOH . H 8 HOH A 29 6030 32 HOH HOH . H 8 HOH A 30 6031 33 HOH HOH . H 8 HOH A 31 6032 34 HOH HOH . H 8 HOH A 32 6033 35 HOH HOH . H 8 HOH A 33 6034 36 HOH HOH . H 8 HOH A 34 6035 37 HOH HOH . H 8 HOH A 35 6036 38 HOH HOH . H 8 HOH A 36 6037 39 HOH HOH . H 8 HOH A 37 6038 40 HOH HOH . H 8 HOH A 38 6039 41 HOH HOH . H 8 HOH A 39 6040 42 HOH HOH . H 8 HOH A 40 6041 43 HOH HOH . H 8 HOH A 41 6042 44 HOH HOH . H 8 HOH A 42 6043 45 HOH HOH . H 8 HOH A 43 6044 46 HOH HOH . H 8 HOH A 44 6045 47 HOH HOH . H 8 HOH A 45 6046 48 HOH HOH . H 8 HOH A 46 6047 49 HOH HOH . H 8 HOH A 47 6048 50 HOH HOH . H 8 HOH A 48 6049 51 HOH HOH . H 8 HOH A 49 6050 52 HOH HOH . H 8 HOH A 50 6051 53 HOH HOH . H 8 HOH A 51 6052 54 HOH HOH . H 8 HOH A 52 6053 55 HOH HOH . H 8 HOH A 53 6054 56 HOH HOH . H 8 HOH A 54 6055 57 HOH HOH . H 8 HOH A 55 6056 58 HOH HOH . H 8 HOH A 56 6057 59 HOH HOH . H 8 HOH A 57 6058 60 HOH HOH . H 8 HOH A 58 6059 61 HOH HOH . H 8 HOH A 59 6060 62 HOH HOH . H 8 HOH A 60 6061 63 HOH HOH . H 8 HOH A 61 6062 64 HOH HOH . H 8 HOH A 62 6063 65 HOH HOH . H 8 HOH A 63 6064 66 HOH HOH . H 8 HOH A 64 6065 67 HOH HOH . H 8 HOH A 65 6066 68 HOH HOH . H 8 HOH A 66 6067 69 HOH HOH . H 8 HOH A 67 6068 70 HOH HOH . H 8 HOH A 68 6069 71 HOH HOH . H 8 HOH A 69 6070 72 HOH HOH . H 8 HOH A 70 6071 73 HOH HOH . H 8 HOH A 71 6072 74 HOH HOH . H 8 HOH A 72 6073 75 HOH HOH . H 8 HOH A 73 6074 76 HOH HOH . H 8 HOH A 74 6075 77 HOH HOH . H 8 HOH A 75 6076 78 HOH HOH . H 8 HOH A 76 6077 80 HOH HOH . H 8 HOH A 77 6078 81 HOH HOH . H 8 HOH A 78 6079 82 HOH HOH . H 8 HOH A 79 6080 83 HOH HOH . H 8 HOH A 80 6081 84 HOH HOH . H 8 HOH A 81 6082 85 HOH HOH . H 8 HOH A 82 6083 86 HOH HOH . H 8 HOH A 83 6084 88 HOH HOH . H 8 HOH A 84 6085 89 HOH HOH . H 8 HOH A 85 6086 90 HOH HOH . H 8 HOH A 86 6087 91 HOH HOH . H 8 HOH A 87 6088 92 HOH HOH . H 8 HOH A 88 6089 93 HOH HOH . H 8 HOH A 89 6090 94 HOH HOH . H 8 HOH A 90 6091 95 HOH HOH . H 8 HOH A 91 6092 96 HOH HOH . H 8 HOH A 92 6093 97 HOH HOH . H 8 HOH A 93 6094 98 HOH HOH . H 8 HOH A 94 6095 99 HOH HOH . H 8 HOH A 95 6096 100 HOH HOH . H 8 HOH A 96 6097 101 HOH HOH . H 8 HOH A 97 6098 102 HOH HOH . H 8 HOH A 98 6099 103 HOH HOH . H 8 HOH A 99 6100 104 HOH HOH . H 8 HOH A 100 6101 105 HOH HOH . H 8 HOH A 101 6102 106 HOH HOH . H 8 HOH A 102 6103 107 HOH HOH . H 8 HOH A 103 6104 108 HOH HOH . H 8 HOH A 104 6105 109 HOH HOH . H 8 HOH A 105 6106 110 HOH HOH . H 8 HOH A 106 6107 111 HOH HOH . H 8 HOH A 107 6108 114 HOH HOH . H 8 HOH A 108 6109 115 HOH HOH . H 8 HOH A 109 6110 117 HOH HOH . H 8 HOH A 110 6111 118 HOH HOH . H 8 HOH A 111 6112 119 HOH HOH . H 8 HOH A 112 6113 120 HOH HOH . H 8 HOH A 113 6114 121 HOH HOH . H 8 HOH A 114 6115 122 HOH HOH . H 8 HOH A 115 6116 123 HOH HOH . H 8 HOH A 116 6117 124 HOH HOH . H 8 HOH A 117 6118 125 HOH HOH . H 8 HOH A 118 6119 128 HOH HOH . H 8 HOH A 119 6120 129 HOH HOH . H 8 HOH A 120 6121 130 HOH HOH . H 8 HOH A 121 6122 131 HOH HOH . H 8 HOH A 122 6123 133 HOH HOH . H 8 HOH A 123 6124 134 HOH HOH . H 8 HOH A 124 6125 135 HOH HOH . H 8 HOH A 125 6126 137 HOH HOH . H 8 HOH A 126 6127 138 HOH HOH . H 8 HOH A 127 6128 139 HOH HOH . H 8 HOH A 128 6129 140 HOH HOH . H 8 HOH A 129 6130 141 HOH HOH . H 8 HOH A 130 6131 142 HOH HOH . H 8 HOH A 131 6132 143 HOH HOH . H 8 HOH A 132 6133 144 HOH HOH . H 8 HOH A 133 6134 145 HOH HOH . H 8 HOH A 134 6135 146 HOH HOH . H 8 HOH A 135 6136 147 HOH HOH . H 8 HOH A 136 6137 148 HOH HOH . H 8 HOH A 137 6138 149 HOH HOH . H 8 HOH A 138 6139 150 HOH HOH . H 8 HOH A 139 6140 151 HOH HOH . H 8 HOH A 140 6141 152 HOH HOH . H 8 HOH A 141 6142 153 HOH HOH . H 8 HOH A 142 6143 154 HOH HOH . H 8 HOH A 143 6144 155 HOH HOH . H 8 HOH A 144 6145 156 HOH HOH . H 8 HOH A 145 6146 157 HOH HOH . H 8 HOH A 146 6147 158 HOH HOH . H 8 HOH A 147 6148 159 HOH HOH . H 8 HOH A 148 6149 160 HOH HOH . H 8 HOH A 149 6150 161 HOH HOH . H 8 HOH A 150 6151 162 HOH HOH . H 8 HOH A 151 6152 163 HOH HOH . H 8 HOH A 152 6153 164 HOH HOH . H 8 HOH A 153 6154 165 HOH HOH . H 8 HOH A 154 6155 166 HOH HOH . H 8 HOH A 155 6156 167 HOH HOH . H 8 HOH A 156 6157 168 HOH HOH . H 8 HOH A 157 6158 169 HOH HOH . H 8 HOH A 158 6159 170 HOH HOH . H 8 HOH A 159 6160 171 HOH HOH . H 8 HOH A 160 6161 172 HOH HOH . H 8 HOH A 161 6162 173 HOH HOH . H 8 HOH A 162 6163 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 4 9.335 24.499 22.953 1 16.36 ? N1 EPE 2001 A 1 HETATM 2 C C2 EPE . . . D 4 8.881 23.323 23.733 1 16.79 ? C2 EPE 2001 A 1 HETATM 3 C C3 EPE . . . D 4 7.343 23.147 23.754 1 13.64 ? C3 EPE 2001 A 1 HETATM 4 N N4 EPE . . . D 4 6.844 23.224 22.399 1 12.12 ? N4 EPE 2001 A 1 HETATM 5 C C5 EPE . . . D 4 7.299 24.438 21.726 1 14.26 ? C5 EPE 2001 A 1 HETATM 6 C C6 EPE . . . D 4 8.791 24.577 21.615 1 17.24 ? C6 EPE 2001 A 1 HETATM 7 C C7 EPE . . . D 4 5.377 23.107 22.324 1 10.46 ? C7 EPE 2001 A 1 HETATM 8 C C8 EPE . . . D 4 4.86 23.061 20.874 1 11.3 ? C8 EPE 2001 A 1 HETATM 9 O O8 EPE . . . D 4 4.718 24.414 20.472 1 10.67 ? O8 EPE 2001 A 1 HETATM 10 C C9 EPE . . . D 4 10.799 24.603 22.772 1 17.36 ? C9 EPE 2001 A 1 HETATM 11 C C10 EPE . . . D 4 11.491 24.647 24.114 1 17.64 ? C10 EPE 2001 A 1 HETATM 12 S S EPE . . . D 4 13.281 24.878 23.971 1 11.94 ? S EPE 2001 A 1 HETATM 13 O O1S EPE . . . D 4 13.69 24.169 22.737 1 11.44 ? O1S EPE 2001 A 1 HETATM 14 O O2S EPE . . . D 4 13.767 24.258 25.205 1 12.53 ? O2S EPE 2001 A 1 HETATM 15 O O3S EPE . . . D 4 13.643 26.274 23.836 1 13.96 ? O3S EPE 2001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #