data_2HV9 # _model_server_result.job_id iXfym0x3NI_M1L8TGCF87A _model_server_result.datetime_utc '2025-07-16 22:39:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 2HV9 # _exptl.entry_id 2HV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HV9 _cell.length_a 63.81 _cell.length_b 63.81 _cell.length_c 112.124 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 290 n n N HN1 SFG sing 291 n n N HN2 SFG sing 292 n n CA C SFG sing 293 n n CA CB SFG sing 294 n n CA HA SFG sing 295 n n C O SFG doub 296 n n C OXT SFG sing 297 n n OXT HXT SFG sing 298 n n CB CG SFG sing 299 n n CB HB1 SFG sing 300 n n CB HB2 SFG sing 301 n n CG CD SFG sing 302 n n CG HG1 SFG sing 303 n n CG HG2 SFG sing 304 n n CD NE SFG sing 305 n n CD C5' SFG sing 306 n n CD HD SFG sing 307 n n NE HNE1 SFG sing 308 n n NE HNE2 SFG sing 309 n n C5' C4' SFG sing 310 n n C5' "H5'1" SFG sing 311 n n C5' "H5'2" SFG sing 312 n n C4' O4' SFG sing 313 n n C4' C3' SFG sing 314 n n C4' H4' SFG sing 315 n n O4' C1' SFG sing 316 n n C3' O3' SFG sing 317 n n C3' C2' SFG sing 318 n n C3' H3' SFG sing 319 n n O3' HO3' SFG sing 320 n n C2' O2' SFG sing 321 n n C2' C1' SFG sing 322 n n C2' H2' SFG sing 323 n n O2' HO2' SFG sing 324 n n C1' N9 SFG sing 325 n n C1' H1' SFG sing 326 n n N9 C8 SFG sing 327 n y N9 C4 SFG sing 328 n y C8 N7 SFG doub 329 n y C8 H8 SFG sing 330 n n N7 C5 SFG sing 331 n y C5 C6 SFG sing 332 n y C5 C4 SFG doub 333 n y C6 N6 SFG sing 334 n n C6 N1 SFG doub 335 n y N6 HN61 SFG sing 336 n n N6 HN62 SFG sing 337 n n N1 C2 SFG sing 338 n y C2 N3 SFG doub 339 n y C2 H2 SFG sing 340 n n N3 C4 SFG sing 341 n y # _atom_sites.entry_id 2HV9 _atom_sites.fract_transf_matrix[1][1] 0.015672 _atom_sites.fract_transf_matrix[1][2] 0.009048 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFG A 1 299 1 SFG INH . C 3 HOH A 1 300 1 HOH WAT . C 3 HOH A 2 301 2 HOH WAT . C 3 HOH A 3 302 3 HOH WAT . C 3 HOH A 4 303 4 HOH WAT . C 3 HOH A 5 304 5 HOH WAT . C 3 HOH A 6 305 6 HOH WAT . C 3 HOH A 7 306 7 HOH WAT . C 3 HOH A 8 307 8 HOH WAT . C 3 HOH A 9 308 9 HOH WAT . C 3 HOH A 10 309 10 HOH WAT . C 3 HOH A 11 310 11 HOH WAT . C 3 HOH A 12 311 12 HOH WAT . C 3 HOH A 13 312 13 HOH WAT . C 3 HOH A 14 313 14 HOH WAT . C 3 HOH A 15 314 15 HOH WAT . C 3 HOH A 16 315 16 HOH WAT . C 3 HOH A 17 316 17 HOH WAT . C 3 HOH A 18 317 18 HOH WAT . C 3 HOH A 19 318 19 HOH WAT . C 3 HOH A 20 319 20 HOH WAT . C 3 HOH A 21 320 21 HOH WAT . C 3 HOH A 22 321 22 HOH WAT . C 3 HOH A 23 322 23 HOH WAT . C 3 HOH A 24 323 24 HOH WAT . C 3 HOH A 25 324 25 HOH WAT . C 3 HOH A 26 325 26 HOH WAT . C 3 HOH A 27 326 27 HOH WAT . C 3 HOH A 28 327 28 HOH WAT . C 3 HOH A 29 328 29 HOH WAT . C 3 HOH A 30 329 30 HOH WAT . C 3 HOH A 31 330 31 HOH WAT . C 3 HOH A 32 331 32 HOH WAT . C 3 HOH A 33 332 33 HOH WAT . C 3 HOH A 34 333 34 HOH WAT . C 3 HOH A 35 334 35 HOH WAT . C 3 HOH A 36 335 36 HOH WAT . C 3 HOH A 37 336 37 HOH WAT . C 3 HOH A 38 337 38 HOH WAT . C 3 HOH A 39 338 39 HOH WAT . C 3 HOH A 40 339 40 HOH WAT . C 3 HOH A 41 340 41 HOH WAT . C 3 HOH A 42 341 42 HOH WAT . C 3 HOH A 43 342 43 HOH WAT . C 3 HOH A 44 343 44 HOH WAT . C 3 HOH A 45 344 45 HOH WAT . C 3 HOH A 46 345 46 HOH WAT . C 3 HOH A 47 346 47 HOH WAT . C 3 HOH A 48 347 48 HOH WAT . C 3 HOH A 49 348 49 HOH WAT . C 3 HOH A 50 349 50 HOH WAT . C 3 HOH A 51 350 51 HOH WAT . C 3 HOH A 52 351 52 HOH WAT . C 3 HOH A 53 352 53 HOH WAT . C 3 HOH A 54 353 54 HOH WAT . C 3 HOH A 55 354 55 HOH WAT . C 3 HOH A 56 355 56 HOH WAT . C 3 HOH A 57 356 57 HOH WAT . C 3 HOH A 58 357 58 HOH WAT . C 3 HOH A 59 358 59 HOH WAT . C 3 HOH A 60 359 60 HOH WAT . C 3 HOH A 61 360 61 HOH WAT . C 3 HOH A 62 361 62 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . B 2 13.837 30.457 91.533 1 33.63 ? N SFG 299 A 1 HETATM 2 C CA SFG . . . B 2 14.61 31.489 92.294 1 36.85 ? CA SFG 299 A 1 HETATM 3 C C SFG . . . B 2 13.906 32.839 92.285 1 37.92 ? C SFG 299 A 1 HETATM 4 O O SFG . . . B 2 12.828 32.96 91.687 1 38.35 ? O SFG 299 A 1 HETATM 5 O OXT SFG . . . B 2 14.556 33.816 92.952 1 42.29 ? OXT SFG 299 A 1 HETATM 6 C CB SFG . . . B 2 16.017 31.73 91.732 1 34.63 ? CB SFG 299 A 1 HETATM 7 C CG SFG . . . B 2 16.403 30.813 90.653 1 30.17 ? CG SFG 299 A 1 HETATM 8 C CD SFG . . . B 2 17.746 30.999 89.989 1 28.66 ? CD SFG 299 A 1 HETATM 9 N NE SFG . . . B 2 17.578 32.167 89.103 1 28.43 ? NE SFG 299 A 1 HETATM 10 C C5' SFG . . . B 2 17.798 29.829 89.083 1 27.89 ? C5' SFG 299 A 1 HETATM 11 C C4' SFG . . . B 2 18.063 28.48 89.761 1 29.85 ? C4' SFG 299 A 1 HETATM 12 O O4' SFG . . . B 2 18.049 27.503 88.711 1 31.15 ? O4' SFG 299 A 1 HETATM 13 C C3' SFG . . . B 2 19.469 28.326 90.372 1 30.75 ? C3' SFG 299 A 1 HETATM 14 O O3' SFG . . . B 2 19.26 28.376 91.83 1 32.17 ? O3' SFG 299 A 1 HETATM 15 C C2' SFG . . . B 2 19.96 26.963 89.966 1 32.48 ? C2' SFG 299 A 1 HETATM 16 O O2' SFG . . . B 2 20.55 26.072 90.879 1 38.63 ? O2' SFG 299 A 1 HETATM 17 C C1' SFG . . . B 2 18.738 26.416 89.198 1 31.98 ? C1' SFG 299 A 1 HETATM 18 N N9 SFG . . . B 2 19.099 25.568 88.11 1 32.46 ? N9 SFG 299 A 1 HETATM 19 C C8 SFG . . . B 2 19.936 25.797 87.034 1 37.52 ? C8 SFG 299 A 1 HETATM 20 N N7 SFG . . . B 2 20.042 24.794 86.216 1 37.2 ? N7 SFG 299 A 1 HETATM 21 C C5 SFG . . . B 2 19.225 23.838 86.789 1 35.93 ? C5 SFG 299 A 1 HETATM 22 C C6 SFG . . . B 2 18.89 22.515 86.407 1 35.5 ? C6 SFG 299 A 1 HETATM 23 N N6 SFG . . . B 2 19.41 21.969 85.289 1 34.84 ? N6 SFG 299 A 1 HETATM 24 N N1 SFG . . . B 2 18.015 21.773 87.201 1 36.57 ? N1 SFG 299 A 1 HETATM 25 C C2 SFG . . . B 2 17.493 22.355 88.343 1 36.93 ? C2 SFG 299 A 1 HETATM 26 N N3 SFG . . . B 2 17.745 23.613 88.802 1 33.15 ? N3 SFG 299 A 1 HETATM 27 C C4 SFG . . . B 2 18.625 24.305 87.969 1 34.47 ? C4 SFG 299 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 545 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #