data_2HVJ # _model_server_result.job_id 0e5b9VLIxXYc1BFKNY9wpw _model_server_result.datetime_utc '2024-11-05 19:49:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 2HVJ # _exptl.entry_id 2HVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.619 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-HYDROXY-2-(NONANOYLOXY)PROPYL LAURATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HVJ _cell.length_a 156.423 _cell.length_b 156.423 _cell.length_c 75.797 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 312.846 312.846 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 312.846 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 312.846 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 C O THR 75 C THR 75 1_555 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc2 C OG1 THR 75 C THR 75 1_555 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.391 ? metalc ? metalc3 C OG1 THR 75 C THR 75 3_755 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? metalc ? metalc4 C OG1 THR 75 C THR 75 4_575 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? metalc ? metalc5 C O THR 75 C THR 75 4_575 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc6 C O THR 75 C THR 75 3_755 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc7 C OG1 THR 75 C THR 75 2_775 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.398 ? metalc ? metalc8 C O THR 75 C THR 75 2_775 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc9 C O GLY 77 C GLY 77 1_555 E K K . C K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc10 C O GLY 77 C GLY 77 3_755 E K K . C K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc11 C O GLY 77 C GLY 77 2_775 E K K . C K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc12 C O GLY 77 C GLY 77 4_575 E K K . C K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? # _chem_comp.formula 'C24 H46 O5' _chem_comp.formula_weight 414.619 _chem_comp.id L2C _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-HYDROXY-2-(NONANOYLOXY)PROPYL LAURATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C11 L2C doub 202 n n C11 C12 L2C sing 203 n n C11 O42 L2C sing 204 n n C12 C13 L2C sing 205 n n C12 H121 L2C sing 206 n n C12 H122 L2C sing 207 n n C13 C14 L2C sing 208 n n C13 H131 L2C sing 209 n n C13 H132 L2C sing 210 n n C14 C15 L2C sing 211 n n C14 H141 L2C sing 212 n n C14 H142 L2C sing 213 n n C15 C16 L2C sing 214 n n C15 H151 L2C sing 215 n n C15 H152 L2C sing 216 n n C16 C17 L2C sing 217 n n C16 H161 L2C sing 218 n n C16 H162 L2C sing 219 n n C17 C18 L2C sing 220 n n C17 H171 L2C sing 221 n n C17 H172 L2C sing 222 n n C18 C19 L2C sing 223 n n C18 H181 L2C sing 224 n n C18 H182 L2C sing 225 n n C19 H191 L2C sing 226 n n C19 H192 L2C sing 227 n n C19 H193 L2C sing 228 n n O21 C21 L2C doub 229 n n C21 C22 L2C sing 230 n n C21 O41 L2C sing 231 n n C22 C23 L2C sing 232 n n C22 H221 L2C sing 233 n n C22 H222 L2C sing 234 n n C23 C24 L2C sing 235 n n C23 H231 L2C sing 236 n n C23 H232 L2C sing 237 n n C24 C25 L2C sing 238 n n C24 H241 L2C sing 239 n n C24 H242 L2C sing 240 n n C25 C26 L2C sing 241 n n C25 H251 L2C sing 242 n n C25 H252 L2C sing 243 n n C26 C27 L2C sing 244 n n C26 H261 L2C sing 245 n n C26 H262 L2C sing 246 n n C27 C28 L2C sing 247 n n C27 H271 L2C sing 248 n n C27 H272 L2C sing 249 n n C28 C29 L2C sing 250 n n C28 H281 L2C sing 251 n n C28 H282 L2C sing 252 n n C29 C30 L2C sing 253 n n C29 H291 L2C sing 254 n n C29 H292 L2C sing 255 n n C30 C31 L2C sing 256 n n C30 H301 L2C sing 257 n n C30 H302 L2C sing 258 n n C31 C32 L2C sing 259 n n C31 H311 L2C sing 260 n n C31 H312 L2C sing 261 n n C32 H321 L2C sing 262 n n C32 H322 L2C sing 263 n n C32 H323 L2C sing 264 n n C41 O41 L2C sing 265 n n C41 C42 L2C sing 266 n n C41 H411 L2C sing 267 n n C41 H412 L2C sing 268 n n C42 O42 L2C sing 269 n n C42 C43 L2C sing 270 n n C42 H42 L2C sing 271 n n C43 O43 L2C sing 272 n n C43 H431 L2C sing 273 n n C43 H432 L2C sing 274 n n O43 HO43 L2C sing 275 n n # _atom_sites.entry_id 2HVJ _atom_sites.fract_transf_matrix[1][1] 0.006393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 A 1 220 202 F09 F09 . E 5 K C 1 3001 3001 K K . F 5 K C 1 3002 3002 K K . G 6 L2C C 1 201 201 L2C L2C . H 7 TBA C 1 4001 4001 TBA TBA . I 8 HOH A 1 221 9 HOH HOH . I 8 HOH A 2 222 12 HOH HOH . I 8 HOH A 3 223 14 HOH HOH . I 8 HOH A 4 224 17 HOH HOH . I 8 HOH A 5 225 18 HOH HOH . I 8 HOH A 6 226 22 HOH HOH . I 8 HOH A 7 227 23 HOH HOH . I 8 HOH A 8 228 28 HOH HOH . I 8 HOH A 9 229 30 HOH HOH . I 8 HOH A 10 230 31 HOH HOH . I 8 HOH A 11 231 34 HOH HOH . I 8 HOH A 12 232 36 HOH HOH . I 8 HOH A 13 233 37 HOH HOH . I 8 HOH A 14 234 38 HOH HOH . I 8 HOH A 15 235 39 HOH HOH . I 8 HOH A 16 236 42 HOH HOH . I 8 HOH A 17 237 43 HOH HOH . I 8 HOH A 18 238 48 HOH HOH . I 8 HOH A 19 239 50 HOH HOH . I 8 HOH A 20 240 52 HOH HOH . I 8 HOH A 21 241 53 HOH HOH . I 8 HOH A 22 242 54 HOH HOH . I 8 HOH A 23 243 55 HOH HOH . I 8 HOH A 24 244 60 HOH HOH . I 8 HOH A 25 245 61 HOH HOH . I 8 HOH A 26 246 65 HOH HOH . J 8 HOH B 1 213 1 HOH HOH . J 8 HOH B 2 214 2 HOH HOH . J 8 HOH B 3 215 3 HOH HOH . J 8 HOH B 4 216 4 HOH HOH . J 8 HOH B 5 217 5 HOH HOH . J 8 HOH B 6 218 8 HOH HOH . J 8 HOH B 7 219 10 HOH HOH . J 8 HOH B 8 220 13 HOH HOH . J 8 HOH B 9 221 20 HOH HOH . J 8 HOH B 10 222 21 HOH HOH . J 8 HOH B 11 223 24 HOH HOH . J 8 HOH B 12 224 25 HOH HOH . J 8 HOH B 13 225 26 HOH HOH . J 8 HOH B 14 226 27 HOH HOH . J 8 HOH B 15 227 29 HOH HOH . J 8 HOH B 16 228 32 HOH HOH . J 8 HOH B 17 229 35 HOH HOH . J 8 HOH B 18 230 41 HOH HOH . J 8 HOH B 19 231 46 HOH HOH . J 8 HOH B 20 232 47 HOH HOH . J 8 HOH B 21 233 51 HOH HOH . J 8 HOH B 22 234 56 HOH HOH . J 8 HOH B 23 235 57 HOH HOH . J 8 HOH B 24 236 58 HOH HOH . J 8 HOH B 25 237 59 HOH HOH . J 8 HOH B 26 238 62 HOH HOH . K 8 HOH C 1 4002 6 HOH HOH . K 8 HOH C 2 4003 7 HOH HOH . K 8 HOH C 3 4004 11 HOH HOH . K 8 HOH C 4 4005 15 HOH HOH . K 8 HOH C 5 4006 16 HOH HOH . K 8 HOH C 6 4007 19 HOH HOH . K 8 HOH C 7 4008 33 HOH HOH . K 8 HOH C 8 4009 40 HOH HOH . K 8 HOH C 9 4010 44 HOH HOH . K 8 HOH C 10 4011 45 HOH HOH . K 8 HOH C 11 4012 49 HOH HOH . K 8 HOH C 12 4013 63 HOH HOH . K 8 HOH C 13 4014 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 L2C . . . G 6 164.928 138.994 -28.827 1 99.65 ? O11 L2C 201 C 1 HETATM 2 C C11 L2C . . . G 6 166.042 139.492 -28.643 1 99.28 ? C11 L2C 201 C 1 HETATM 3 C C12 L2C . . . G 6 166.581 140.533 -29.682 1 97.84 ? C12 L2C 201 C 1 HETATM 4 C C13 L2C . . . G 6 166.304 140.03 -31.091 1 95.74 ? C13 L2C 201 C 1 HETATM 5 C C14 L2C . . . G 6 166.584 141.04 -32.192 1 94.72 ? C14 L2C 201 C 1 HETATM 6 C C15 L2C . . . G 6 165.815 140.618 -33.442 1 93.34 ? C15 L2C 201 C 1 HETATM 7 C C16 L2C . . . G 6 166.253 141.315 -34.715 1 93.36 ? C16 L2C 201 C 1 HETATM 8 C C17 L2C . . . G 6 165.374 140.878 -35.885 1 92.28 ? C17 L2C 201 C 1 HETATM 9 C C18 L2C . . . G 6 165.901 141.371 -37.224 1 92.96 ? C18 L2C 201 C 1 HETATM 10 C C19 L2C . . . G 6 164.968 140.957 -38.349 1 91.89 ? C19 L2C 201 C 1 HETATM 11 O O21 L2C . . . G 6 170.972 135.472 -29.365 1 100.11 ? O21 L2C 201 C 1 HETATM 12 C C21 L2C . . . G 6 170.18 136.396 -29.565 1 100.84 ? C21 L2C 201 C 1 HETATM 13 C C22 L2C . . . G 6 169.695 136.715 -30.995 1 99.39 ? C22 L2C 201 C 1 HETATM 14 C C23 L2C . . . G 6 170.801 137.38 -31.788 1 98.84 ? C23 L2C 201 C 1 HETATM 15 C C24 L2C . . . G 6 170.251 138.374 -32.805 1 97.83 ? C24 L2C 201 C 1 HETATM 16 C C25 L2C . . . G 6 171.071 139.08 -33.718 1 97.59 ? C25 L2C 201 C 1 HETATM 17 C C26 L2C . . . G 6 172.608 138.932 -33.799 1 97.09 ? C26 L2C 201 C 1 HETATM 18 C C27 L2C . . . G 6 173.363 139.928 -32.915 1 96.6 ? C27 L2C 201 C 1 HETATM 19 C C28 L2C . . . G 6 173.367 141.34 -33.489 1 96.11 ? C28 L2C 201 C 1 HETATM 20 C C29 L2C . . . G 6 174.566 141.579 -34.398 1 95.85 ? C29 L2C 201 C 1 HETATM 21 C C30 L2C . . . G 6 174.557 143.001 -34.962 1 95.74 ? C30 L2C 201 C 1 HETATM 22 C C31 L2C . . . G 6 175.818 143.325 -35.774 1 95.36 ? C31 L2C 201 C 1 HETATM 23 C C32 L2C . . . G 6 177.038 143.599 -34.893 1 93.8 ? C32 L2C 201 C 1 HETATM 24 C C41 L2C . . . G 6 168.399 137.45 -28.302 1 101.15 ? C41 L2C 201 C 1 HETATM 25 O O41 L2C . . . G 6 169.836 137.268 -28.484 1 101.55 ? O41 L2C 201 C 1 HETATM 26 C C42 L2C . . . G 6 168.182 138.741 -27.49 1 100.58 ? C42 L2C 201 C 1 HETATM 27 O O42 L2C . . . G 6 166.786 139.15 -27.372 1 101.19 ? O42 L2C 201 C 1 HETATM 28 C C43 L2C . . . G 6 168.812 138.612 -26.096 1 101.23 ? C43 L2C 201 C 1 HETATM 29 O O43 L2C . . . G 6 168.501 137.356 -25.457 1 101 ? O43 L2C 201 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #