data_2HVJ # _model_server_result.job_id 4vPrcAWAyWHVZNLKQ85SJg _model_server_result.datetime_utc '2024-11-05 19:50:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":220}' # _entry.id 2HVJ # _exptl.entry_id 2HVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.254 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NONAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HVJ _cell.length_a 156.423 _cell.length_b 156.423 _cell.length_c 75.797 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 312.846 312.846 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 312.846 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 312.846 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 C O THR 75 C THR 75 1_555 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc2 C OG1 THR 75 C THR 75 1_555 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.391 ? metalc ? metalc3 C OG1 THR 75 C THR 75 3_755 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? metalc ? metalc4 C OG1 THR 75 C THR 75 4_575 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? metalc ? metalc5 C O THR 75 C THR 75 4_575 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc6 C O THR 75 C THR 75 3_755 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc7 C OG1 THR 75 C THR 75 2_775 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.398 ? metalc ? metalc8 C O THR 75 C THR 75 2_775 F K K . C K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc9 C O GLY 77 C GLY 77 1_555 E K K . C K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc10 C O GLY 77 C GLY 77 3_755 E K K . C K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc11 C O GLY 77 C GLY 77 2_775 E K K . C K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc12 C O GLY 77 C GLY 77 4_575 E K K . C K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? # _chem_comp.formula 'C9 H20 O' _chem_comp.formula_weight 144.254 _chem_comp.id F09 _chem_comp.mon_nstd_flag . _chem_comp.name NONAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 F09 sing 83 n n C1 H11 F09 sing 84 n n C1 H12 F09 sing 85 n n C1 H13 F09 sing 86 n n C2 C3 F09 sing 87 n n C2 H21 F09 sing 88 n n C2 H22 F09 sing 89 n n C3 C4 F09 sing 90 n n C3 H31 F09 sing 91 n n C3 H32 F09 sing 92 n n C4 C5 F09 sing 93 n n C4 H41 F09 sing 94 n n C4 H42 F09 sing 95 n n C5 C6 F09 sing 96 n n C5 H51 F09 sing 97 n n C5 H52 F09 sing 98 n n C6 C7 F09 sing 99 n n C6 H61 F09 sing 100 n n C6 H62 F09 sing 101 n n C7 C8 F09 sing 102 n n C7 H71 F09 sing 103 n n C7 H72 F09 sing 104 n n C8 C9 F09 sing 105 n n C8 H81 F09 sing 106 n n C8 H82 F09 sing 107 n n C9 OXT F09 sing 108 n n C9 H91 F09 sing 109 n n C9 H92 F09 sing 110 n n OXT HXT F09 sing 111 n n # _atom_sites.entry_id 2HVJ _atom_sites.fract_transf_matrix[1][1] 0.006393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 A 1 220 202 F09 F09 . E 5 K C 1 3001 3001 K K . F 5 K C 1 3002 3002 K K . G 6 L2C C 1 201 201 L2C L2C . H 7 TBA C 1 4001 4001 TBA TBA . I 8 HOH A 1 221 9 HOH HOH . I 8 HOH A 2 222 12 HOH HOH . I 8 HOH A 3 223 14 HOH HOH . I 8 HOH A 4 224 17 HOH HOH . I 8 HOH A 5 225 18 HOH HOH . I 8 HOH A 6 226 22 HOH HOH . I 8 HOH A 7 227 23 HOH HOH . I 8 HOH A 8 228 28 HOH HOH . I 8 HOH A 9 229 30 HOH HOH . I 8 HOH A 10 230 31 HOH HOH . I 8 HOH A 11 231 34 HOH HOH . I 8 HOH A 12 232 36 HOH HOH . I 8 HOH A 13 233 37 HOH HOH . I 8 HOH A 14 234 38 HOH HOH . I 8 HOH A 15 235 39 HOH HOH . I 8 HOH A 16 236 42 HOH HOH . I 8 HOH A 17 237 43 HOH HOH . I 8 HOH A 18 238 48 HOH HOH . I 8 HOH A 19 239 50 HOH HOH . I 8 HOH A 20 240 52 HOH HOH . I 8 HOH A 21 241 53 HOH HOH . I 8 HOH A 22 242 54 HOH HOH . I 8 HOH A 23 243 55 HOH HOH . I 8 HOH A 24 244 60 HOH HOH . I 8 HOH A 25 245 61 HOH HOH . I 8 HOH A 26 246 65 HOH HOH . J 8 HOH B 1 213 1 HOH HOH . J 8 HOH B 2 214 2 HOH HOH . J 8 HOH B 3 215 3 HOH HOH . J 8 HOH B 4 216 4 HOH HOH . J 8 HOH B 5 217 5 HOH HOH . J 8 HOH B 6 218 8 HOH HOH . J 8 HOH B 7 219 10 HOH HOH . J 8 HOH B 8 220 13 HOH HOH . J 8 HOH B 9 221 20 HOH HOH . J 8 HOH B 10 222 21 HOH HOH . J 8 HOH B 11 223 24 HOH HOH . J 8 HOH B 12 224 25 HOH HOH . J 8 HOH B 13 225 26 HOH HOH . J 8 HOH B 14 226 27 HOH HOH . J 8 HOH B 15 227 29 HOH HOH . J 8 HOH B 16 228 32 HOH HOH . J 8 HOH B 17 229 35 HOH HOH . J 8 HOH B 18 230 41 HOH HOH . J 8 HOH B 19 231 46 HOH HOH . J 8 HOH B 20 232 47 HOH HOH . J 8 HOH B 21 233 51 HOH HOH . J 8 HOH B 22 234 56 HOH HOH . J 8 HOH B 23 235 57 HOH HOH . J 8 HOH B 24 236 58 HOH HOH . J 8 HOH B 25 237 59 HOH HOH . J 8 HOH B 26 238 62 HOH HOH . K 8 HOH C 1 4002 6 HOH HOH . K 8 HOH C 2 4003 7 HOH HOH . K 8 HOH C 3 4004 11 HOH HOH . K 8 HOH C 4 4005 15 HOH HOH . K 8 HOH C 5 4006 16 HOH HOH . K 8 HOH C 6 4007 19 HOH HOH . K 8 HOH C 7 4008 33 HOH HOH . K 8 HOH C 8 4009 40 HOH HOH . K 8 HOH C 9 4010 44 HOH HOH . K 8 HOH C 10 4011 45 HOH HOH . K 8 HOH C 11 4012 49 HOH HOH . K 8 HOH C 12 4013 63 HOH HOH . K 8 HOH C 13 4014 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F09 . . . D 4 158.626 133.068 -40.299 1 99.68 ? C1 F09 220 A 1 HETATM 2 C C2 F09 . . . D 4 157.428 132.445 -39.578 1 98.71 ? C2 F09 220 A 1 HETATM 3 C C3 F09 . . . D 4 156.821 133.386 -38.523 1 97.98 ? C3 F09 220 A 1 HETATM 4 C C4 F09 . . . D 4 157.684 133.504 -37.261 1 97.03 ? C4 F09 220 A 1 HETATM 5 C C5 F09 . . . D 4 157.595 132.273 -36.351 1 96.32 ? C5 F09 220 A 1 HETATM 6 C C6 F09 . . . D 4 156.482 132.397 -35.322 1 95.74 ? C6 F09 220 A 1 HETATM 7 C C7 F09 . . . D 4 156.634 131.341 -34.246 1 95.74 ? C7 F09 220 A 1 HETATM 8 C C8 F09 . . . D 4 155.745 131.638 -33.056 1 98.08 ? C8 F09 220 A 1 HETATM 9 C C9 F09 . . . D 4 155.999 130.67 -31.903 1 99.1 ? C9 F09 220 A 1 HETATM 10 O OXT F09 . . . D 4 155.721 129.477 -32.002 1 101.48 ? OXT F09 220 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #