data_2HWL # _model_server_result.job_id RiXhnVdWTzefeBEijA1fEA _model_server_result.datetime_utc '2024-12-27 01:24:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":360}' # _entry.id 2HWL # _exptl.entry_id 2HWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.35 _cell.angle_gamma 90 _cell.entry_id 2HWL _cell.length_a 66.397 _cell.length_b 81.523 _cell.length_c 70.256 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 C SG CYS 9 C CYS 1 1_555 D SG CYS 119 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 D SG CYS 28 D CYS 42 1_555 D SG CYS 44 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 D SG CYS 173 D CYS 168 1_555 D SG CYS 187 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 201 D CYS 191 1_555 D SG CYS 231 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 D ND2 ASN 53 D ASN 60 1_555 G C1 NAG . D NAG 360 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale2 E C GLU 5 P GLU 417 1_555 E N PTR 6 P PTR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 E C PTR 6 P PTR 418 1_555 E N ASP 7 P ASP 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 E C LEU 9 P LEU 421 1_555 E N PTR 10 P PTR 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 E C PTR 10 P PTR 422 1_555 E N PRO 11 P PRO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? metalc ? metalc1 B O ARG 233 B ARG 221 1_555 F NA NA . B NA 802 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 B O LYS 236 B LYS 224 1_555 F NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 F NA NA . B NA 802 1_555 J O HOH . B HOH 1085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc4 F NA NA . B NA 802 1_555 J O HOH . B HOH 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc5 F NA NA . B NA 802 1_555 J O HOH . B HOH 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc6 F NA NA . B NA 802 1_555 J O HOH . B HOH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc7 D O ARG 233 D ARG 221 1_555 H NA NA . D NA 801 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc8 D O LYS 236 D LYS 224 1_555 H NA NA . D NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc9 H NA NA . D NA 801 1_555 L O HOH . D HOH 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc10 H NA NA . D NA 801 1_555 L O HOH . D HOH 1038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc11 H NA NA . D NA 801 1_555 L O HOH . D HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc12 H NA NA . D NA 801 1_555 L O HOH . D HOH 1135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2HWL _atom_sites.fract_transf_matrix[1][1] 0.015061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005289 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NA B 1 802 802 NA NA . G 5 NAG D 1 360 360 NAG NAG . H 4 NA D 1 801 801 NA NA . I 6 HOH A 1 1114 1114 HOH HOH . I 6 HOH A 2 1130 1130 HOH HOH . I 6 HOH A 3 1132 1132 HOH HOH . J 6 HOH B 1 1003 1003 HOH HOH . J 6 HOH B 2 1009 1009 HOH HOH . J 6 HOH B 3 1011 1011 HOH HOH . J 6 HOH B 4 1012 1012 HOH HOH . J 6 HOH B 5 1013 1013 HOH HOH . J 6 HOH B 6 1015 1015 HOH HOH . J 6 HOH B 7 1016 1016 HOH HOH . J 6 HOH B 8 1017 1017 HOH HOH . J 6 HOH B 9 1019 1019 HOH HOH . J 6 HOH B 10 1026 1026 HOH HOH . J 6 HOH B 11 1027 1027 HOH HOH . J 6 HOH B 12 1029 1029 HOH HOH . J 6 HOH B 13 1030 1030 HOH HOH . J 6 HOH B 14 1031 1031 HOH HOH . J 6 HOH B 15 1032 1032 HOH HOH . J 6 HOH B 16 1041 1041 HOH HOH . J 6 HOH B 17 1042 1042 HOH HOH . J 6 HOH B 18 1043 1043 HOH HOH . J 6 HOH B 19 1044 1044 HOH HOH . J 6 HOH B 20 1045 1045 HOH HOH . J 6 HOH B 21 1048 1048 HOH HOH . J 6 HOH B 22 1049 1049 HOH HOH . J 6 HOH B 23 1050 1050 HOH HOH . J 6 HOH B 24 1051 1051 HOH HOH . J 6 HOH B 25 1052 1052 HOH HOH . J 6 HOH B 26 1053 1053 HOH HOH . J 6 HOH B 27 1054 1054 HOH HOH . J 6 HOH B 28 1060 1060 HOH HOH . J 6 HOH B 29 1063 1063 HOH HOH . J 6 HOH B 30 1064 1064 HOH HOH . J 6 HOH B 31 1068 1068 HOH HOH . J 6 HOH B 32 1070 1070 HOH HOH . J 6 HOH B 33 1072 1072 HOH HOH . J 6 HOH B 34 1073 1073 HOH HOH . J 6 HOH B 35 1074 1074 HOH HOH . J 6 HOH B 36 1075 1075 HOH HOH . J 6 HOH B 37 1077 1077 HOH HOH . J 6 HOH B 38 1078 1078 HOH HOH . J 6 HOH B 39 1079 1079 HOH HOH . J 6 HOH B 40 1080 1080 HOH HOH . J 6 HOH B 41 1081 1081 HOH HOH . J 6 HOH B 42 1085 1085 HOH HOH . J 6 HOH B 43 1087 1087 HOH HOH . J 6 HOH B 44 1089 1089 HOH HOH . J 6 HOH B 45 1091 1091 HOH HOH . J 6 HOH B 46 1092 1092 HOH HOH . J 6 HOH B 47 1100 1100 HOH HOH . J 6 HOH B 48 1101 1101 HOH HOH . J 6 HOH B 49 1107 1107 HOH HOH . J 6 HOH B 50 1108 1108 HOH HOH . J 6 HOH B 51 1110 1110 HOH HOH . J 6 HOH B 52 1115 1115 HOH HOH . J 6 HOH B 53 1116 1116 HOH HOH . J 6 HOH B 54 1117 1117 HOH HOH . J 6 HOH B 55 1119 1119 HOH HOH . J 6 HOH B 56 1121 1121 HOH HOH . J 6 HOH B 57 1124 1124 HOH HOH . J 6 HOH B 58 1125 1125 HOH HOH . J 6 HOH B 59 1129 1129 HOH HOH . J 6 HOH B 60 1131 1131 HOH HOH . J 6 HOH B 61 1134 1134 HOH HOH . K 6 HOH C 1 1028 1028 HOH HOH . K 6 HOH C 2 1057 1057 HOH HOH . K 6 HOH C 3 1094 1094 HOH HOH . K 6 HOH C 4 1103 1103 HOH HOH . K 6 HOH C 5 1104 1104 HOH HOH . K 6 HOH C 6 1112 1112 HOH HOH . K 6 HOH C 7 1113 1113 HOH HOH . K 6 HOH C 8 1128 1128 HOH HOH . L 6 HOH D 1 1002 1002 HOH HOH . L 6 HOH D 2 1004 1004 HOH HOH . L 6 HOH D 3 1005 1005 HOH HOH . L 6 HOH D 4 1006 1006 HOH HOH . L 6 HOH D 5 1007 1007 HOH HOH . L 6 HOH D 6 1008 1008 HOH HOH . L 6 HOH D 7 1010 1010 HOH HOH . L 6 HOH D 8 1014 1014 HOH HOH . L 6 HOH D 9 1018 1018 HOH HOH . L 6 HOH D 10 1020 1020 HOH HOH . L 6 HOH D 11 1021 1021 HOH HOH . L 6 HOH D 12 1022 1022 HOH HOH . L 6 HOH D 13 1024 1024 HOH HOH . L 6 HOH D 14 1025 1025 HOH HOH . L 6 HOH D 15 1033 1033 HOH HOH . L 6 HOH D 16 1034 1034 HOH HOH . L 6 HOH D 17 1035 1035 HOH HOH . L 6 HOH D 18 1036 1036 HOH HOH . L 6 HOH D 19 1037 1037 HOH HOH . L 6 HOH D 20 1038 1038 HOH HOH . L 6 HOH D 21 1039 1039 HOH HOH . L 6 HOH D 22 1040 1040 HOH HOH . L 6 HOH D 23 1047 1047 HOH HOH . L 6 HOH D 24 1055 1055 HOH HOH . L 6 HOH D 25 1056 1056 HOH HOH . L 6 HOH D 26 1058 1058 HOH HOH . L 6 HOH D 27 1059 1059 HOH HOH . L 6 HOH D 28 1061 1061 HOH HOH . L 6 HOH D 29 1062 1062 HOH HOH . L 6 HOH D 30 1065 1065 HOH HOH . L 6 HOH D 31 1066 1066 HOH HOH . L 6 HOH D 32 1067 1067 HOH HOH . L 6 HOH D 33 1069 1069 HOH HOH . L 6 HOH D 34 1076 1076 HOH HOH . L 6 HOH D 35 1082 1082 HOH HOH . L 6 HOH D 36 1083 1083 HOH HOH . L 6 HOH D 37 1084 1084 HOH HOH . L 6 HOH D 38 1086 1086 HOH HOH . L 6 HOH D 39 1090 1090 HOH HOH . L 6 HOH D 40 1093 1093 HOH HOH . L 6 HOH D 41 1095 1095 HOH HOH . L 6 HOH D 42 1096 1096 HOH HOH . L 6 HOH D 43 1097 1097 HOH HOH . L 6 HOH D 44 1098 1098 HOH HOH . L 6 HOH D 45 1099 1099 HOH HOH . L 6 HOH D 46 1102 1102 HOH HOH . L 6 HOH D 47 1105 1105 HOH HOH . L 6 HOH D 48 1106 1106 HOH HOH . L 6 HOH D 49 1109 1109 HOH HOH . L 6 HOH D 50 1118 1118 HOH HOH . L 6 HOH D 51 1120 1120 HOH HOH . L 6 HOH D 52 1126 1126 HOH HOH . L 6 HOH D 53 1127 1127 HOH HOH . L 6 HOH D 54 1133 1133 HOH HOH . L 6 HOH D 55 1135 1135 HOH HOH . M 6 HOH P 1 1023 1023 HOH HOH . M 6 HOH P 2 1046 1046 HOH HOH . M 6 HOH P 3 1088 1088 HOH HOH . M 6 HOH P 4 1111 1111 HOH HOH . M 6 HOH P 5 1122 1122 HOH HOH . M 6 HOH P 6 1123 1123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 5 -8.066 -2.907 10.155 1 84.75 ? C1 NAG 360 D 1 HETATM 2 C C2 NAG . . . G 5 -8.154 -2.803 8.625 1 88.58 ? C2 NAG 360 D 1 HETATM 3 C C3 NAG . . . G 5 -9.062 -3.92 7.955 1 89.81 ? C3 NAG 360 D 1 HETATM 4 C C4 NAG . . . G 5 -8.924 -5.338 8.621 1 89.77 ? C4 NAG 360 D 1 HETATM 5 C C5 NAG . . . G 5 -8.827 -5.14 10.18 1 89.22 ? C5 NAG 360 D 1 HETATM 6 C C6 NAG . . . G 5 -8.703 -6.328 11.12 1 89.43 ? C6 NAG 360 D 1 HETATM 7 C C7 NAG . . . G 5 -8.251 -0.746 7.239 1 94.12 ? C7 NAG 360 D 1 HETATM 8 C C8 NAG . . . G 5 -9.345 -0.569 6.185 1 94.47 ? C8 NAG 360 D 1 HETATM 9 N N2 NAG . . . G 5 -8.574 -1.409 8.382 1 91.81 ? N2 NAG 360 D 1 HETATM 10 O O3 NAG . . . G 5 -8.684 -4.051 6.582 1 90.42 ? O3 NAG 360 D 1 HETATM 11 O O4 NAG . . . G 5 -10.041 -6.134 8.255 1 90.81 ? O4 NAG 360 D 1 HETATM 12 O O5 NAG . . . G 5 -7.675 -4.282 10.421 1 87.41 ? O5 NAG 360 D 1 HETATM 13 O O6 NAG . . . G 5 -7.371 -6.837 10.957 1 89.87 ? O6 NAG 360 D 1 HETATM 14 O O7 NAG . . . G 5 -7.136 -0.299 7.039 1 95.77 ? O7 NAG 360 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #