data_2HWU
#
_model_server_result.job_id            EJeqa4hY7rlMPOrsPhdFrw 
_model_server_result.datetime_utc      '2024-11-09 02:28:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hwu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":204}' 
#
_entry.id    2HWU 
#
_exptl.entry_id    2HWU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              244.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            URIDINE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HWU 
_cell.length_a            88.88 
_cell.length_b            123.99 
_cell.length_c            134.16 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HWU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
_chem_comp.formula           'C9 H12 N2 O6' 
_chem_comp.formula_weight    244.201 
_chem_comp.id                URI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              URIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 URI sing 362 n n 
N1 C6 URI sing 363 n n 
N1 C1' URI sing 364 n n 
C2 N3 URI sing 365 n n 
C2 O2 URI doub 366 n n 
N3 C4 URI sing 367 n n 
N3 H3 URI sing 368 n n 
C4 C5 URI sing 369 n n 
C4 O4 URI doub 370 n n 
C5 C6 URI doub 371 n n 
C5 H5 URI sing 372 n n 
C6 H6 URI sing 373 n n 
C1' C2' URI sing 374 n n 
C1' O4' URI sing 375 n n 
C1' H1' URI sing 376 n n 
C2' C3' URI sing 377 n n 
C2' O2' URI sing 378 n n 
C2' H2' URI sing 379 n n 
C3' C4' URI sing 380 n n 
C3' O3' URI sing 381 n n 
C3' H3' URI sing 382 n n 
C4' O4' URI sing 383 n n 
C4' C5' URI sing 384 n n 
C4' H4' URI sing 385 n n 
O2' HO2' URI sing 386 n n 
O3' HO3' URI sing 387 n n 
C5' O5' URI sing 388 n n 
C5' "H5'1" URI sing 389 n n 
C5' "H5'2" URI sing 390 n n 
O5' HO5' URI sing 391 n n 
#
_atom_sites.entry_id                     2HWU 
_atom_sites.fract_transf_matrix[1][1]    0.011251 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008065 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PO4 A 1 1 1 PO4 PO4 . 
H 3 URI A 1 201 1 URI URN . 
I 3 URI B 1 202 2 URI URN . 
J 3 URI C 1 203 3 URI URN . 
K 3 URI D 1 204 4 URI URN . 
L 3 URI E 1 205 5 URI URN . 
M 3 URI F 1 206 6 URI URN . 
N 4 HOH A 1 17 17 HOH HOH . 
N 4 HOH A 2 18 18 HOH HOH . 
N 4 HOH A 3 25 25 HOH HOH . 
N 4 HOH A 4 26 26 HOH HOH . 
N 4 HOH A 5 37 37 HOH HOH . 
N 4 HOH A 6 42 42 HOH HOH . 
N 4 HOH A 7 44 44 HOH HOH . 
N 4 HOH A 8 48 48 HOH HOH . 
N 4 HOH A 9 54 54 HOH HOH . 
N 4 HOH A 10 59 59 HOH HOH . 
N 4 HOH A 11 60 60 HOH HOH . 
N 4 HOH A 12 63 63 HOH HOH . 
N 4 HOH A 13 64 64 HOH HOH . 
N 4 HOH A 14 70 70 HOH HOH . 
O 4 HOH B 1 6 6 HOH HOH . 
O 4 HOH B 2 11 11 HOH HOH . 
O 4 HOH B 3 19 19 HOH HOH . 
O 4 HOH B 4 33 33 HOH HOH . 
O 4 HOH B 5 34 34 HOH HOH . 
O 4 HOH B 6 38 38 HOH HOH . 
O 4 HOH B 7 39 39 HOH HOH . 
O 4 HOH B 8 43 43 HOH HOH . 
O 4 HOH B 9 45 45 HOH HOH . 
O 4 HOH B 10 50 50 HOH HOH . 
O 4 HOH B 11 61 61 HOH HOH . 
O 4 HOH B 12 65 65 HOH HOH . 
O 4 HOH B 13 66 66 HOH HOH . 
O 4 HOH B 14 68 68 HOH HOH . 
O 4 HOH B 15 86 86 HOH HOH . 
O 4 HOH B 16 100 100 HOH HOH . 
O 4 HOH B 17 110 110 HOH HOH . 
O 4 HOH B 18 141 141 HOH HOH . 
P 4 HOH C 1 4 4 HOH HOH . 
P 4 HOH C 2 5 5 HOH HOH . 
P 4 HOH C 3 7 7 HOH HOH . 
P 4 HOH C 4 10 10 HOH HOH . 
P 4 HOH C 5 22 22 HOH HOH . 
P 4 HOH C 6 23 23 HOH HOH . 
P 4 HOH C 7 35 35 HOH HOH . 
P 4 HOH C 8 40 40 HOH HOH . 
P 4 HOH C 9 53 53 HOH HOH . 
P 4 HOH C 10 62 62 HOH HOH . 
P 4 HOH C 11 74 74 HOH HOH . 
P 4 HOH C 12 84 84 HOH HOH . 
P 4 HOH C 13 96 96 HOH HOH . 
Q 4 HOH D 1 2 2 HOH HOH . 
Q 4 HOH D 2 15 15 HOH HOH . 
Q 4 HOH D 3 29 29 HOH HOH . 
Q 4 HOH D 4 55 55 HOH HOH . 
Q 4 HOH D 5 58 58 HOH HOH . 
Q 4 HOH D 6 87 87 HOH HOH . 
Q 4 HOH D 7 95 95 HOH HOH . 
Q 4 HOH D 8 97 97 HOH HOH . 
Q 4 HOH D 9 101 101 HOH HOH . 
Q 4 HOH D 10 135 135 HOH HOH . 
Q 4 HOH D 11 143 143 HOH HOH . 
R 4 HOH E 1 9 9 HOH HOH . 
R 4 HOH E 2 13 13 HOH HOH . 
R 4 HOH E 3 21 21 HOH HOH . 
R 4 HOH E 4 24 24 HOH HOH . 
R 4 HOH E 5 28 28 HOH HOH . 
R 4 HOH E 6 56 56 HOH HOH . 
R 4 HOH E 7 69 69 HOH HOH . 
R 4 HOH E 8 72 72 HOH HOH . 
R 4 HOH E 9 83 83 HOH HOH . 
R 4 HOH E 10 85 85 HOH HOH . 
R 4 HOH E 11 88 88 HOH HOH . 
R 4 HOH E 12 90 90 HOH HOH . 
R 4 HOH E 13 104 104 HOH HOH . 
R 4 HOH E 14 109 109 HOH HOH . 
S 4 HOH F 1 12 12 HOH HOH . 
S 4 HOH F 2 14 14 HOH HOH . 
S 4 HOH F 3 16 16 HOH HOH . 
S 4 HOH F 4 30 30 HOH HOH . 
S 4 HOH F 5 36 36 HOH HOH . 
S 4 HOH F 6 47 47 HOH HOH . 
S 4 HOH F 7 57 57 HOH HOH . 
S 4 HOH F 8 71 71 HOH HOH . 
S 4 HOH F 9 89 89 HOH HOH . 
S 4 HOH F 10 91 91 HOH HOH . 
S 4 HOH F 11 93 93 HOH HOH . 
S 4 HOH F 12 142 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 URI . . . K 3 -7.13 -14.94 88.307 1 12.43 ? N1 URI 204 D 1 
HETATM 2 C C2 URI . . . K 3 -7.434 -13.888 87.394 1 12.46 ? C2 URI 204 D 1 
HETATM 3 N N3 URI . . . K 3 -8.682 -13.778 86.881 1 12.54 ? N3 URI 204 D 1 
HETATM 4 C C4 URI . . . K 3 -9.66 -14.647 87.223 1 12.63 ? C4 URI 204 D 1 
HETATM 5 C C5 URI . . . K 3 -9.383 -15.677 88.117 1 12.59 ? C5 URI 204 D 1 
HETATM 6 C C6 URI . . . K 3 -8.103 -15.799 88.648 1 12.37 ? C6 URI 204 D 1 
HETATM 7 O O2 URI . . . K 3 -6.585 -13.045 87.031 1 12.59 ? O2 URI 204 D 1 
HETATM 8 O O4 URI . . . K 3 -10.808 -14.525 86.737 1 12.6 ? O4 URI 204 D 1 
HETATM 9 C C1' URI . . . K 3 -5.814 -15.164 88.942 1 12.58 ? C1' URI 204 D 1 
HETATM 10 C C2' URI . . . K 3 -4.6 -14.668 88.163 1 12.73 ? C2' URI 204 D 1 
HETATM 11 C C3' URI . . . K 3 -3.969 -13.591 89.031 1 12.71 ? C3' URI 204 D 1 
HETATM 12 C C4' URI . . . K 3 -4.661 -13.679 90.381 1 12.7 ? C4' URI 204 D 1 
HETATM 13 O O2' URI . . . K 3 -3.686 -15.749 87.949 1 12.87 ? O2' URI 204 D 1 
HETATM 14 O O3' URI . . . K 3 -2.568 -13.812 89.203 1 12.52 ? O3' URI 204 D 1 
HETATM 15 O O4' URI . . . K 3 -5.8 -14.528 90.223 1 12.68 ? O4' URI 204 D 1 
HETATM 16 C C5' URI . . . K 3 -5.089 -12.308 90.888 1 12.72 ? C5' URI 204 D 1 
HETATM 17 O O5' URI . . . K 3 -6.366 -12.416 91.527 1 12.81 ? O5' URI 204 D 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#