data_2HXL # _model_server_result.job_id Ukg285vkMqpQJ5bv1ibInQ _model_server_result.datetime_utc '2024-12-21 16:13:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":324}' # _entry.id 2HXL # _exptl.entry_id 2HXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.477 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(5-{[4-(AMINOMETHYL)PIPERIDIN-1-YL]METHYL}-1H-INDOL-2-YL)-1H-INDAZOLE-6-CARBONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.82 _cell.angle_gamma 90 _cell.entry_id 2HXL _cell.length_a 45.1 _cell.length_b 65.64 _cell.length_c 58.14 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H24 N6' _chem_comp.formula_weight 384.477 _chem_comp.id 422 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(5-{[4-(AMINOMETHYL)PIPERIDIN-1-YL]METHYL}-1H-INDOL-2-YL)-1H-INDAZOLE-6-CARBONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 422 sing 1 n y C1 C7 422 sing 2 n n C1 C2 422 doub 3 n y C2 C3 422 sing 4 n y C2 H2 422 sing 5 n n C3 C4 422 doub 6 n y C3 C11 422 sing 7 n y C4 C5 422 sing 8 n y C4 N13 422 sing 9 n y C5 C6 422 doub 10 n y C5 H5 422 sing 11 n n C6 H6 422 sing 12 n n C11 C12 422 doub 13 n y C11 H11 422 sing 14 n n C12 N13 422 sing 15 n y C12 C14 422 sing 16 n y N13 HN13 422 sing 17 n n C14 N18 422 doub 18 n y C14 C15 422 sing 19 n y C15 C16 422 doub 20 n y C15 C19 422 sing 21 n y C16 N17 422 sing 22 n y C16 C22 422 sing 23 n y N17 N18 422 sing 24 n y N17 HN17 422 sing 25 n n C19 C20 422 doub 26 n y C19 H19 422 sing 27 n n C20 C21 422 sing 28 n y C20 H20 422 sing 29 n n C21 C22 422 doub 30 n y C21 C23 422 sing 31 n n C22 H22 422 sing 32 n n C23 N1 422 trip 33 n n C7 N2 422 sing 34 n n C7 H71 422 sing 35 n n C7 H72 422 sing 36 n n N2 C8 422 sing 37 n n N2 C9 422 sing 38 n n C8 C13 422 sing 39 n n C8 H81 422 sing 40 n n C8 H82 422 sing 41 n n C9 C10 422 sing 42 n n C9 H91 422 sing 43 n n C9 H92 422 sing 44 n n C10 C17 422 sing 45 n n C10 H101 422 sing 46 n n C10 H102 422 sing 47 n n C13 C17 422 sing 48 n n C13 H131 422 sing 49 n n C13 H132 422 sing 50 n n C17 C18 422 sing 51 n n C17 H17 422 sing 52 n n C18 N3 422 sing 53 n n C18 H181 422 sing 54 n n C18 H182 422 sing 55 n n N3 HN31 422 sing 56 n n N3 HN32 422 sing 57 n n # _atom_sites.entry_id 2HXL _atom_sites.fract_transf_matrix[1][1] 0.022173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00187 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 422 A 1 324 201 422 422 . C 3 HOH A 1 325 1 HOH HOH . C 3 HOH A 2 326 2 HOH HOH . C 3 HOH A 3 327 3 HOH HOH . C 3 HOH A 4 328 4 HOH HOH . C 3 HOH A 5 329 5 HOH HOH . C 3 HOH A 6 330 6 HOH HOH . C 3 HOH A 7 331 7 HOH HOH . C 3 HOH A 8 332 8 HOH HOH . C 3 HOH A 9 333 9 HOH HOH . C 3 HOH A 10 334 10 HOH HOH . C 3 HOH A 11 335 11 HOH HOH . C 3 HOH A 12 336 12 HOH HOH . C 3 HOH A 13 337 13 HOH HOH . C 3 HOH A 14 338 14 HOH HOH . C 3 HOH A 15 339 15 HOH HOH . C 3 HOH A 16 340 16 HOH HOH . C 3 HOH A 17 341 17 HOH HOH . C 3 HOH A 18 342 18 HOH HOH . C 3 HOH A 19 343 19 HOH HOH . C 3 HOH A 20 344 20 HOH HOH . C 3 HOH A 21 345 21 HOH HOH . C 3 HOH A 22 346 22 HOH HOH . C 3 HOH A 23 347 23 HOH HOH . C 3 HOH A 24 348 24 HOH HOH . C 3 HOH A 25 349 25 HOH HOH . C 3 HOH A 26 350 26 HOH HOH . C 3 HOH A 27 351 27 HOH HOH . C 3 HOH A 28 352 28 HOH HOH . C 3 HOH A 29 353 29 HOH HOH . C 3 HOH A 30 354 30 HOH HOH . C 3 HOH A 31 355 31 HOH HOH . C 3 HOH A 32 356 32 HOH HOH . C 3 HOH A 33 357 33 HOH HOH . C 3 HOH A 34 358 34 HOH HOH . C 3 HOH A 35 359 35 HOH HOH . C 3 HOH A 36 360 36 HOH HOH . C 3 HOH A 37 361 37 HOH HOH . C 3 HOH A 38 362 38 HOH HOH . C 3 HOH A 39 363 39 HOH HOH . C 3 HOH A 40 364 40 HOH HOH . C 3 HOH A 41 365 41 HOH HOH . C 3 HOH A 42 366 42 HOH HOH . C 3 HOH A 43 367 43 HOH HOH . C 3 HOH A 44 368 44 HOH HOH . C 3 HOH A 45 369 45 HOH HOH . C 3 HOH A 46 370 46 HOH HOH . C 3 HOH A 47 371 47 HOH HOH . C 3 HOH A 48 372 48 HOH HOH . C 3 HOH A 49 373 49 HOH HOH . C 3 HOH A 50 374 50 HOH HOH . C 3 HOH A 51 375 51 HOH HOH . C 3 HOH A 52 376 52 HOH HOH . C 3 HOH A 53 377 53 HOH HOH . C 3 HOH A 54 378 54 HOH HOH . C 3 HOH A 55 379 55 HOH HOH . C 3 HOH A 56 380 56 HOH HOH . C 3 HOH A 57 381 57 HOH HOH . C 3 HOH A 58 382 58 HOH HOH . C 3 HOH A 59 383 59 HOH HOH . C 3 HOH A 60 384 60 HOH HOH . C 3 HOH A 61 385 61 HOH HOH . C 3 HOH A 62 386 62 HOH HOH . C 3 HOH A 63 387 63 HOH HOH . C 3 HOH A 64 388 64 HOH HOH . C 3 HOH A 65 389 65 HOH HOH . C 3 HOH A 66 390 66 HOH HOH . C 3 HOH A 67 391 67 HOH HOH . C 3 HOH A 68 392 68 HOH HOH . C 3 HOH A 69 393 69 HOH HOH . C 3 HOH A 70 394 70 HOH HOH . C 3 HOH A 71 395 71 HOH HOH . C 3 HOH A 72 396 72 HOH HOH . C 3 HOH A 73 397 73 HOH HOH . C 3 HOH A 74 398 74 HOH HOH . C 3 HOH A 75 399 75 HOH HOH . C 3 HOH A 76 400 76 HOH HOH . C 3 HOH A 77 401 77 HOH HOH . C 3 HOH A 78 402 78 HOH HOH . C 3 HOH A 79 403 79 HOH HOH . C 3 HOH A 80 404 80 HOH HOH . C 3 HOH A 81 405 81 HOH HOH . C 3 HOH A 82 406 82 HOH HOH . C 3 HOH A 83 407 83 HOH HOH . C 3 HOH A 84 408 84 HOH HOH . C 3 HOH A 85 409 85 HOH HOH . C 3 HOH A 86 410 86 HOH HOH . C 3 HOH A 87 411 87 HOH HOH . C 3 HOH A 88 412 88 HOH HOH . C 3 HOH A 89 413 89 HOH HOH . C 3 HOH A 90 414 90 HOH HOH . C 3 HOH A 91 415 91 HOH HOH . C 3 HOH A 92 416 92 HOH HOH . C 3 HOH A 93 417 93 HOH HOH . C 3 HOH A 94 418 94 HOH HOH . C 3 HOH A 95 419 95 HOH HOH . C 3 HOH A 96 420 96 HOH HOH . C 3 HOH A 97 421 97 HOH HOH . C 3 HOH A 98 422 98 HOH HOH . C 3 HOH A 99 423 99 HOH HOH . C 3 HOH A 100 424 100 HOH HOH . C 3 HOH A 101 425 101 HOH HOH . C 3 HOH A 102 426 102 HOH HOH . C 3 HOH A 103 427 103 HOH HOH . C 3 HOH A 104 428 104 HOH HOH . C 3 HOH A 105 429 105 HOH HOH . C 3 HOH A 106 430 106 HOH HOH . C 3 HOH A 107 431 107 HOH HOH . C 3 HOH A 108 432 108 HOH HOH . C 3 HOH A 109 433 109 HOH HOH . C 3 HOH A 110 434 110 HOH HOH . C 3 HOH A 111 435 111 HOH HOH . C 3 HOH A 112 436 112 HOH HOH . C 3 HOH A 113 437 113 HOH HOH . C 3 HOH A 114 438 114 HOH HOH . C 3 HOH A 115 439 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 422 . . . B 2 22.383 -2.635 8.81 1 33.15 ? C1 422 324 A 1 HETATM 2 C C2 422 . . . B 2 21.109 -3.057 9.429 1 31.04 ? C2 422 324 A 1 HETATM 3 C C3 422 . . . B 2 19.942 -2.205 9.266 1 29.6 ? C3 422 324 A 1 HETATM 4 C C4 422 . . . B 2 20.06 -0.941 8.504 1 29.81 ? C4 422 324 A 1 HETATM 5 C C5 422 . . . B 2 21.328 -0.522 7.888 1 29.82 ? C5 422 324 A 1 HETATM 6 C C6 422 . . . B 2 22.52 -1.385 8.04 1 32.63 ? C6 422 324 A 1 HETATM 7 C C11 422 . . . B 2 18.583 -2.373 9.744 1 28.96 ? C11 422 324 A 1 HETATM 8 C C12 422 . . . B 2 17.937 -1.178 9.258 1 25.67 ? C12 422 324 A 1 HETATM 9 N N13 422 . . . B 2 18.769 -0.361 8.581 1 28.19 ? N13 422 324 A 1 HETATM 10 C C14 422 . . . B 2 16.478 -0.774 9.47 1 26.05 ? C14 422 324 A 1 HETATM 11 C C15 422 . . . B 2 15.432 -1.403 10.256 1 24.28 ? C15 422 324 A 1 HETATM 12 C C16 422 . . . B 2 14.266 -0.537 10.157 1 23.96 ? C16 422 324 A 1 HETATM 13 N N17 422 . . . B 2 14.602 0.496 9.368 1 25.2 ? N17 422 324 A 1 HETATM 14 N N18 422 . . . B 2 15.911 0.4 8.984 1 25.23 ? N18 422 324 A 1 HETATM 15 C C19 422 . . . B 2 15.309 -2.619 11.116 1 23.2 ? C19 422 324 A 1 HETATM 16 C C20 422 . . . B 2 14.044 -2.912 11.844 1 24.37 ? C20 422 324 A 1 HETATM 17 C C21 422 . . . B 2 12.916 -1.955 11.709 1 24.75 ? C21 422 324 A 1 HETATM 18 C C22 422 . . . B 2 12.996 -0.751 10.854 1 23.37 ? C22 422 324 A 1 HETATM 19 C C23 422 . . . B 2 11.715 -2.203 12.479 1 22.09 ? C23 422 324 A 1 HETATM 20 C C7 422 . . . B 2 23.643 -3.495 8.956 1 36.3 ? C7 422 324 A 1 HETATM 21 N N2 422 . . . B 2 23.691 -4.748 8.156 1 41.13 ? N2 422 324 A 1 HETATM 22 C C8 422 . . . B 2 22.791 -4.867 6.989 1 42.06 ? C8 422 324 A 1 HETATM 23 C C9 422 . . . B 2 25.075 -5.165 7.776 1 42.04 ? C9 422 324 A 1 HETATM 24 C C10 422 . . . B 2 25.058 -6.609 7.279 1 43.59 ? C10 422 324 A 1 HETATM 25 C C13 422 . . . B 2 22.77 -6.318 6.522 1 43.25 ? C13 422 324 A 1 HETATM 26 C C17 422 . . . B 2 24.138 -6.835 6.079 1 44.23 ? C17 422 324 A 1 HETATM 27 C C18 422 . . . B 2 24.068 -8.327 5.737 1 44.53 ? C18 422 324 A 1 HETATM 28 N N3 422 . . . B 2 23.119 -8.495 4.622 1 46.88 ? N3 422 324 A 1 HETATM 29 N N1 422 . . . B 2 10.735 -2.422 13.066 1 27.65 ? N1 422 324 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 29 #