data_2HY3
#
_model_server_result.job_id            68fHK06e7SWc3dKeWkNJFg 
_model_server_result.datetime_utc      '2024-11-30 20:45:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":159}' 
#
_entry.id    2HY3 
#
_exptl.entry_id    2HY3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.939 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'VANADATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.58 
_cell.angle_gamma         90 
_cell.entry_id            2HY3 
_cell.length_a            58.173 
_cell.length_b            74.787 
_cell.length_c            82.071 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 44 A ASP 861 1_555 A N MSE 45 A MSE 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MSE 45 A MSE 862 1_555 A N ASN 46 A ASN 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C ARG 120 A ARG 937 1_555 A N MSE 121 A MSE 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 A C MSE 121 A MSE 938 1_555 A N ILE 122 A ILE 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C VAL 131 A VAL 948 1_555 A N MSE 132 A MSE 949 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C MSE 132 A MSE 949 1_555 A N ILE 133 A ILE 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 A C ASP 211 A ASP 1028 1_555 A N MSE 212 A MSE 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale8 A C MSE 212 A MSE 1029 1_555 A N GLY 213 A GLY 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale9 A C ARG 232 A ARG 1049 1_555 A N MSE 233 A MSE 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale10 A C MSE 233 A MSE 1050 1_555 A N PRO 234 A PRO 1051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale11 A C SER 258 A SER 1075 1_555 A N MSE 259 A MSE 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale12 A C MSE 259 A MSE 1076 1_555 A N LEU 260 A LEU 1077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale13 B C ASP 44 B ASP 861 1_555 B N MSE 45 B MSE 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale14 B C MSE 45 B MSE 862 1_555 B N ASN 46 B ASN 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale15 B C ARG 120 B ARG 937 1_555 B N MSE 121 B MSE 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale16 B C MSE 121 B MSE 938 1_555 B N ILE 122 B ILE 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale17 B C VAL 131 B VAL 948 1_555 B N MSE 132 B MSE 949 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale18 B C MSE 132 B MSE 949 1_555 B N ILE 133 B ILE 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale19 B C ASP 211 B ASP 1028 1_555 B N MSE 212 B MSE 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale20 B C MSE 212 B MSE 1029 1_555 B N GLY 213 B GLY 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale21 B C ARG 232 B ARG 1049 1_555 B N MSE 233 B MSE 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale22 B C MSE 233 B MSE 1050 1_555 B N PRO 234 B PRO 1051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale23 B C SER 258 B SER 1075 1_555 B N MSE 259 B MSE 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale24 B C MSE 259 B MSE 1076 1_555 B N LEU 260 B LEU 1077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
metalc ? metalc1 C V VO4 . A VO4 158 1_555 A SG CYS 243 A CYS 1060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? 
metalc ? metalc2 D V VO4 . B VO4 159 1_555 B SG CYS 243 B CYS 1060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
#
_chem_comp.formula           'O4 V -3' 
_chem_comp.formula_weight    114.939 
_chem_comp.id                VO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'VANADATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
V O1 VO4 doub 395 n n 
V O2 VO4 sing 396 n n 
V O3 VO4 sing 397 n n 
V O4 VO4 sing 398 n n 
#
_atom_sites.entry_id                     2HY3 
_atom_sites.fract_transf_matrix[1][1]    0.01719 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002901 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013371 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VO4 A 1 158 158 VO4 VO4 . 
D 2 VO4 B 1 159 159 VO4 VO4 . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 2 2 HOH HOH . 
E 3 HOH A 3 3 3 HOH HOH . 
E 3 HOH A 4 6 6 HOH HOH . 
E 3 HOH A 5 10 10 HOH HOH . 
E 3 HOH A 6 12 12 HOH HOH . 
E 3 HOH A 7 13 13 HOH HOH . 
E 3 HOH A 8 14 14 HOH HOH . 
E 3 HOH A 9 15 15 HOH HOH . 
E 3 HOH A 10 16 16 HOH HOH . 
E 3 HOH A 11 17 17 HOH HOH . 
E 3 HOH A 12 18 18 HOH HOH . 
E 3 HOH A 13 19 19 HOH HOH . 
E 3 HOH A 14 23 23 HOH HOH . 
E 3 HOH A 15 24 24 HOH HOH . 
E 3 HOH A 16 25 25 HOH HOH . 
E 3 HOH A 17 26 26 HOH HOH . 
E 3 HOH A 18 27 27 HOH HOH . 
E 3 HOH A 19 30 30 HOH HOH . 
E 3 HOH A 20 31 31 HOH HOH . 
E 3 HOH A 21 32 32 HOH HOH . 
E 3 HOH A 22 33 33 HOH HOH . 
E 3 HOH A 23 34 34 HOH HOH . 
E 3 HOH A 24 35 35 HOH HOH . 
E 3 HOH A 25 36 36 HOH HOH . 
E 3 HOH A 26 37 37 HOH HOH . 
E 3 HOH A 27 47 47 HOH HOH . 
E 3 HOH A 28 48 48 HOH HOH . 
E 3 HOH A 29 49 49 HOH HOH . 
E 3 HOH A 30 50 50 HOH HOH . 
E 3 HOH A 31 51 51 HOH HOH . 
F 3 HOH B 1 4 4 HOH HOH . 
F 3 HOH B 2 5 5 HOH HOH . 
F 3 HOH B 3 7 7 HOH HOH . 
F 3 HOH B 4 8 8 HOH HOH . 
F 3 HOH B 5 9 9 HOH HOH . 
F 3 HOH B 6 11 11 HOH HOH . 
F 3 HOH B 7 21 21 HOH HOH . 
F 3 HOH B 8 22 22 HOH HOH . 
F 3 HOH B 9 28 28 HOH HOH . 
F 3 HOH B 10 29 29 HOH HOH . 
F 3 HOH B 11 38 38 HOH HOH . 
F 3 HOH B 12 39 39 HOH HOH . 
F 3 HOH B 13 40 40 HOH HOH . 
F 3 HOH B 14 41 41 HOH HOH . 
F 3 HOH B 15 42 42 HOH HOH . 
F 3 HOH B 16 43 43 HOH HOH . 
F 3 HOH B 17 44 44 HOH HOH . 
F 3 HOH B 18 45 45 HOH HOH . 
F 3 HOH B 19 46 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 V V VO4 . . . D 2 18.826 3.649 33.281 1 61.04 ? V VO4 159 B 1 
HETATM 2 O O1 VO4 . . . D 2 19.012 5.506 32.875 1 56.13 ? O1 VO4 159 B 1 
HETATM 3 O O2 VO4 . . . D 2 20.5 2.815 33.744 1 59.27 ? O2 VO4 159 B 1 
HETATM 4 O O3 VO4 . . . D 2 18.223 2.814 31.643 1 58.53 ? O3 VO4 159 B 1 
HETATM 5 O O4 VO4 . . . D 2 17.73 3.119 34.779 1 55.68 ? O4 VO4 159 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#