data_2HYF # _model_server_result.job_id qAilQcAoZykffsAVvl8ypA _model_server_result.datetime_utc '2024-11-14 04:05:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":151}' # _entry.id 2HYF # _exptl.entry_id 2HYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HYF _cell.length_a 55.89 _cell.length_b 65.03 _cell.length_c 186.97 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,O,P 1 1 C,D,I,J,K,L,M,N,Q,R 2 1 D,K,L,M,N,R 3 2 A,B,C,E,F,G,H,I,J,O,P,Q 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 55.89 32.515 93.485 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 5 A SER 5 1_555 A N MSE 6 A MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 6 A MSE 6 1_555 A N GLU 7 A GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C TYR 14 A TYR 14 1_555 A N MSE 15 A MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 15 A MSE 15 1_555 A N LEU 16 A LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C LYS 41 A LYS 41 1_555 A N MSE 42 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 42 A MSE 42 1_555 A N VAL 43 A VAL 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C SER 5 B SER 5 1_555 B N MSE 6 B MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 B C MSE 6 B MSE 6 1_555 B N GLU 7 B GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C TYR 14 B TYR 14 1_555 B N MSE 15 B MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 15 B MSE 15 1_555 B N LEU 16 B LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 B C LYS 41 B LYS 41 1_555 B N MSE 42 B MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 42 B MSE 42 1_555 B N VAL 43 B VAL 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 C C SER 5 C SER 5 1_555 C N MSE 6 C MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 C C MSE 6 C MSE 6 1_555 C N GLU 7 C GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 C C TYR 14 C TYR 14 1_555 C N MSE 15 C MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 C C MSE 15 C MSE 15 1_555 C N LEU 16 C LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 C C LYS 41 C LYS 41 1_555 C N MSE 42 C MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 C C MSE 42 C MSE 42 1_555 C N VAL 43 C VAL 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale19 D C SER 5 D SER 5 1_555 D N MSE 6 D MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale20 D C MSE 6 D MSE 6 1_555 D N GLU 7 D GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 D C TYR 14 D TYR 14 1_555 D N MSE 15 D MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 D C MSE 15 D MSE 15 1_555 D N LEU 16 D LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 D C LYS 41 D LYS 41 1_555 D N MSE 42 D MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 D C MSE 42 D MSE 42 1_555 D N VAL 43 D VAL 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 329 n n S O2 SO4 doub 330 n n S O3 SO4 sing 331 n n S O4 SO4 sing 332 n n # _atom_sites.entry_id 2HYF _atom_sites.fract_transf_matrix[1][1] 0.017892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 150 150 SO4 SO4 . F 2 SO4 A 1 151 150 SO4 SO4 . G 2 SO4 B 1 150 150 SO4 SO4 . H 2 SO4 B 1 151 151 SO4 SO4 . I 2 SO4 C 1 150 150 SO4 SO4 . J 2 SO4 C 1 151 151 SO4 SO4 . K 2 SO4 D 1 150 150 SO4 SO4 . L 2 SO4 D 1 151 151 SO4 SO4 . M 2 SO4 D 1 152 151 SO4 SO4 . N 3 EPE D 1 300 300 EPE EPE . O 4 HOH A 1 152 32 HOH HOH . O 4 HOH A 2 153 45 HOH HOH . P 4 HOH B 1 152 1 HOH HOH . P 4 HOH B 2 153 8 HOH HOH . P 4 HOH B 3 154 27 HOH HOH . P 4 HOH B 4 155 31 HOH HOH . Q 4 HOH C 1 152 2 HOH HOH . Q 4 HOH C 2 153 3 HOH HOH . Q 4 HOH C 3 154 5 HOH HOH . Q 4 HOH C 4 155 6 HOH HOH . Q 4 HOH C 5 156 28 HOH HOH . Q 4 HOH C 6 157 29 HOH HOH . Q 4 HOH C 7 158 30 HOH HOH . Q 4 HOH C 8 159 42 HOH HOH . Q 4 HOH C 9 160 46 HOH HOH . R 4 HOH D 1 301 4 HOH HOH . R 4 HOH D 2 302 9 HOH HOH . R 4 HOH D 3 303 21 HOH HOH . R 4 HOH D 4 304 22 HOH HOH . R 4 HOH D 5 305 23 HOH HOH . R 4 HOH D 6 306 24 HOH HOH . R 4 HOH D 7 307 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 2 28.151 -4.034 38.646 1 62.15 ? S SO4 151 C 1 HETATM 2 O O1 SO4 . . . J 2 26.913 -4.732 38.247 1 63.73 ? O1 SO4 151 C 1 HETATM 3 O O2 SO4 . . . J 2 29.27 -4.994 38.68 1 60.92 ? O2 SO4 151 C 1 HETATM 4 O O3 SO4 . . . J 2 28.438 -2.967 37.668 1 59.87 ? O3 SO4 151 C 1 HETATM 5 O O4 SO4 . . . J 2 27.964 -3.447 39.991 1 63.09 ? O4 SO4 151 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #