data_2HYF # _model_server_result.job_id EgSWgp0FJqLEvOJyF47DlQ _model_server_result.datetime_utc '2024-11-14 03:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":300}' # _entry.id 2HYF # _exptl.entry_id 2HYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HYF _cell.length_a 55.89 _cell.length_b 65.03 _cell.length_c 186.97 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,O,P 1 1 C,D,I,J,K,L,M,N,Q,R 2 1 D,K,L,M,N,R 3 2 A,B,C,E,F,G,H,I,J,O,P,Q 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 55.89 32.515 93.485 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 5 A SER 5 1_555 A N MSE 6 A MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 6 A MSE 6 1_555 A N GLU 7 A GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C TYR 14 A TYR 14 1_555 A N MSE 15 A MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 15 A MSE 15 1_555 A N LEU 16 A LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C LYS 41 A LYS 41 1_555 A N MSE 42 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 42 A MSE 42 1_555 A N VAL 43 A VAL 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C SER 5 B SER 5 1_555 B N MSE 6 B MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 B C MSE 6 B MSE 6 1_555 B N GLU 7 B GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C TYR 14 B TYR 14 1_555 B N MSE 15 B MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 15 B MSE 15 1_555 B N LEU 16 B LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 B C LYS 41 B LYS 41 1_555 B N MSE 42 B MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 42 B MSE 42 1_555 B N VAL 43 B VAL 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 C C SER 5 C SER 5 1_555 C N MSE 6 C MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 C C MSE 6 C MSE 6 1_555 C N GLU 7 C GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 C C TYR 14 C TYR 14 1_555 C N MSE 15 C MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 C C MSE 15 C MSE 15 1_555 C N LEU 16 C LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 C C LYS 41 C LYS 41 1_555 C N MSE 42 C MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 C C MSE 42 C MSE 42 1_555 C N VAL 43 C VAL 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale19 D C SER 5 D SER 5 1_555 D N MSE 6 D MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale20 D C MSE 6 D MSE 6 1_555 D N GLU 7 D GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 D C TYR 14 D TYR 14 1_555 D N MSE 15 D MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 D C MSE 15 D MSE 15 1_555 D N LEU 16 D LEU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 D C LYS 41 D LYS 41 1_555 D N MSE 42 D MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 D C MSE 42 D MSE 42 1_555 D N VAL 43 D VAL 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 2HYF _atom_sites.fract_transf_matrix[1][1] 0.017892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 150 150 SO4 SO4 . F 2 SO4 A 1 151 150 SO4 SO4 . G 2 SO4 B 1 150 150 SO4 SO4 . H 2 SO4 B 1 151 151 SO4 SO4 . I 2 SO4 C 1 150 150 SO4 SO4 . J 2 SO4 C 1 151 151 SO4 SO4 . K 2 SO4 D 1 150 150 SO4 SO4 . L 2 SO4 D 1 151 151 SO4 SO4 . M 2 SO4 D 1 152 151 SO4 SO4 . N 3 EPE D 1 300 300 EPE EPE . O 4 HOH A 1 152 32 HOH HOH . O 4 HOH A 2 153 45 HOH HOH . P 4 HOH B 1 152 1 HOH HOH . P 4 HOH B 2 153 8 HOH HOH . P 4 HOH B 3 154 27 HOH HOH . P 4 HOH B 4 155 31 HOH HOH . Q 4 HOH C 1 152 2 HOH HOH . Q 4 HOH C 2 153 3 HOH HOH . Q 4 HOH C 3 154 5 HOH HOH . Q 4 HOH C 4 155 6 HOH HOH . Q 4 HOH C 5 156 28 HOH HOH . Q 4 HOH C 6 157 29 HOH HOH . Q 4 HOH C 7 158 30 HOH HOH . Q 4 HOH C 8 159 42 HOH HOH . Q 4 HOH C 9 160 46 HOH HOH . R 4 HOH D 1 301 4 HOH HOH . R 4 HOH D 2 302 9 HOH HOH . R 4 HOH D 3 303 21 HOH HOH . R 4 HOH D 4 304 22 HOH HOH . R 4 HOH D 5 305 23 HOH HOH . R 4 HOH D 6 306 24 HOH HOH . R 4 HOH D 7 307 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . N 3 19.562 -52.723 47.937 1 43.56 ? N1 EPE 300 D 1 HETATM 2 C C2 EPE . . . N 3 18.629 -52.054 46.965 1 40.3 ? C2 EPE 300 D 1 HETATM 3 C C3 EPE . . . N 3 18.877 -52.721 45.578 1 40.86 ? C3 EPE 300 D 1 HETATM 4 N N4 EPE . . . N 3 18.718 -54.242 45.671 1 42.9 ? N4 EPE 300 D 1 HETATM 5 C C5 EPE . . . N 3 19.712 -54.891 46.657 1 42.54 ? C5 EPE 300 D 1 HETATM 6 C C6 EPE . . . N 3 19.473 -54.28 48.062 1 41.72 ? C6 EPE 300 D 1 HETATM 7 C C7 EPE . . . N 3 18.938 -54.843 44.308 1 39.94 ? C7 EPE 300 D 1 HETATM 8 C C8 EPE . . . N 3 17.633 -55.537 43.872 1 43.51 ? C8 EPE 300 D 1 HETATM 9 O O8 EPE . . . N 3 16.511 -54.99 44.615 1 43.45 ? O8 EPE 300 D 1 HETATM 10 C C9 EPE . . . N 3 19.355 -52.168 49.34 1 43.92 ? C9 EPE 300 D 1 HETATM 11 C C10 EPE . . . N 3 20.568 -52.682 50.144 1 49.33 ? C10 EPE 300 D 1 HETATM 12 S S EPE . . . N 3 20.548 -51.832 51.729 1 57.69 ? S EPE 300 D 1 HETATM 13 O O1S EPE . . . N 3 21.701 -52.409 52.42 1 57.19 ? O1S EPE 300 D 1 HETATM 14 O O2S EPE . . . N 3 19.26 -52.145 52.391 1 54.25 ? O2S EPE 300 D 1 HETATM 15 O O3S EPE . . . N 3 20.634 -50.377 51.535 1 54.18 ? O3S EPE 300 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #