data_2HYY # _model_server_result.job_id 6P7Fk8cWok4NZFwXBmPqeQ _model_server_result.datetime_utc '2024-10-15 10:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 2HYY # _exptl.entry_id 2HYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HYY _cell.length_a 141.679 _cell.length_b 148.575 _cell.length_c 115.217 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 290 n y C1 C2 STI sing 291 n y C1 H11 STI sing 292 n n C6 C5 STI sing 293 n y C6 H61 STI sing 294 n n C5 C4 STI doub 295 n y C5 C7 STI sing 296 n y C4 N3 STI sing 297 n y C4 H41 STI sing 298 n n N3 C2 STI doub 299 n y C2 H21 STI sing 300 n n C7 C12 STI doub 301 n y C7 N8 STI sing 302 n y C12 C11 STI sing 303 n y C12 H121 STI sing 304 n n C11 N10 STI doub 305 n y C11 H111 STI sing 306 n n N10 C9 STI sing 307 n y C9 N8 STI doub 308 n y C9 N13 STI sing 309 n n N13 C14 STI sing 310 n n N13 H131 STI sing 311 n n C14 C19 STI doub 312 n y C14 C15 STI sing 313 n y C19 C18 STI sing 314 n y C19 C20 STI sing 315 n n C18 C17 STI doub 316 n y C18 H181 STI sing 317 n n C17 C16 STI sing 318 n y C17 H171 STI sing 319 n n C16 C15 STI doub 320 n y C16 N21 STI sing 321 n n C15 H151 STI sing 322 n n N21 C22 STI sing 323 n n N21 H211 STI sing 324 n n C22 C23 STI sing 325 n n C22 O29 STI doub 326 n n C23 C25 STI doub 327 n y C23 C29 STI sing 328 n y C25 C26 STI sing 329 n y C25 H251 STI sing 330 n n C26 C27 STI doub 331 n y C26 H261 STI sing 332 n n C27 C28 STI sing 333 n y C27 C46 STI sing 334 n n C28 C29 STI doub 335 n y C28 H281 STI sing 336 n n C29 H291 STI sing 337 n n C46 N48 STI sing 338 n n C46 H461 STI sing 339 n n C46 H462 STI sing 340 n n N48 C53 STI sing 341 n n N48 C49 STI sing 342 n n C53 C52 STI sing 343 n n C53 H531 STI sing 344 n n C53 H532 STI sing 345 n n C52 N51 STI sing 346 n n C52 H521 STI sing 347 n n C52 H522 STI sing 348 n n N51 C54 STI sing 349 n n N51 C50 STI sing 350 n n C54 H541 STI sing 351 n n C54 H542 STI sing 352 n n C54 H543 STI sing 353 n n C50 C49 STI sing 354 n n C50 H501 STI sing 355 n n C50 H502 STI sing 356 n n C49 H491 STI sing 357 n n C49 H492 STI sing 358 n n C20 H201 STI sing 359 n n C20 H202 STI sing 360 n n C20 H203 STI sing 361 n n # _atom_sites.entry_id 2HYY _atom_sites.fract_transf_matrix[1][1] 0.007058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 STI A 1 600 600 STI STI . F 2 STI B 1 600 600 STI STI . G 2 STI C 1 600 600 STI STI . H 2 STI D 1 600 600 STI STI . I 3 HOH A 1 1 1 HOH HOH . I 3 HOH A 2 2 2 HOH HOH . I 3 HOH A 3 15 15 HOH HOH . I 3 HOH A 4 17 17 HOH HOH . I 3 HOH A 5 20 20 HOH HOH . I 3 HOH A 6 21 21 HOH HOH . I 3 HOH A 7 23 23 HOH HOH . I 3 HOH A 8 37 37 HOH HOH . I 3 HOH A 9 39 39 HOH HOH . I 3 HOH A 10 46 46 HOH HOH . I 3 HOH A 11 50 50 HOH HOH . I 3 HOH A 12 52 52 HOH HOH . I 3 HOH A 13 54 54 HOH HOH . I 3 HOH A 14 55 55 HOH HOH . I 3 HOH A 15 65 65 HOH HOH . I 3 HOH A 16 66 66 HOH HOH . I 3 HOH A 17 68 68 HOH HOH . I 3 HOH A 18 71 71 HOH HOH . I 3 HOH A 19 73 73 HOH HOH . I 3 HOH A 20 75 75 HOH HOH . I 3 HOH A 21 81 81 HOH HOH . I 3 HOH A 22 82 82 HOH HOH . I 3 HOH A 23 84 84 HOH HOH . I 3 HOH A 24 87 87 HOH HOH . I 3 HOH A 25 88 88 HOH HOH . I 3 HOH A 26 89 89 HOH HOH . I 3 HOH A 27 93 93 HOH HOH . I 3 HOH A 28 94 94 HOH HOH . I 3 HOH A 29 96 96 HOH HOH . I 3 HOH A 30 104 104 HOH HOH . I 3 HOH A 31 106 106 HOH HOH . I 3 HOH A 32 108 108 HOH HOH . I 3 HOH A 33 109 109 HOH HOH . I 3 HOH A 34 110 110 HOH HOH . I 3 HOH A 35 127 127 HOH HOH . I 3 HOH A 36 130 130 HOH HOH . I 3 HOH A 37 133 133 HOH HOH . I 3 HOH A 38 141 141 HOH HOH . I 3 HOH A 39 144 144 HOH HOH . I 3 HOH A 40 146 146 HOH HOH . I 3 HOH A 41 149 149 HOH HOH . I 3 HOH A 42 150 150 HOH HOH . I 3 HOH A 43 157 157 HOH HOH . I 3 HOH A 44 169 169 HOH HOH . I 3 HOH A 45 175 175 HOH HOH . I 3 HOH A 46 176 176 HOH HOH . I 3 HOH A 47 180 180 HOH HOH . I 3 HOH A 48 181 181 HOH HOH . I 3 HOH A 49 187 187 HOH HOH . I 3 HOH A 50 188 188 HOH HOH . I 3 HOH A 51 197 197 HOH HOH . J 3 HOH B 1 4 4 HOH HOH . J 3 HOH B 2 6 6 HOH HOH . J 3 HOH B 3 10 10 HOH HOH . J 3 HOH B 4 14 14 HOH HOH . J 3 HOH B 5 19 19 HOH HOH . J 3 HOH B 6 24 24 HOH HOH . J 3 HOH B 7 25 25 HOH HOH . J 3 HOH B 8 26 26 HOH HOH . J 3 HOH B 9 27 27 HOH HOH . J 3 HOH B 10 29 29 HOH HOH . J 3 HOH B 11 33 33 HOH HOH . J 3 HOH B 12 36 36 HOH HOH . J 3 HOH B 13 44 44 HOH HOH . J 3 HOH B 14 49 49 HOH HOH . J 3 HOH B 15 56 56 HOH HOH . J 3 HOH B 16 60 60 HOH HOH . J 3 HOH B 17 61 61 HOH HOH . J 3 HOH B 18 69 69 HOH HOH . J 3 HOH B 19 74 74 HOH HOH . J 3 HOH B 20 79 79 HOH HOH . J 3 HOH B 21 86 86 HOH HOH . J 3 HOH B 22 90 90 HOH HOH . J 3 HOH B 23 98 98 HOH HOH . J 3 HOH B 24 112 112 HOH HOH . J 3 HOH B 25 113 113 HOH HOH . J 3 HOH B 26 116 116 HOH HOH . J 3 HOH B 27 118 118 HOH HOH . J 3 HOH B 28 120 120 HOH HOH . J 3 HOH B 29 122 122 HOH HOH . J 3 HOH B 30 125 125 HOH HOH . J 3 HOH B 31 135 135 HOH HOH . J 3 HOH B 32 137 137 HOH HOH . J 3 HOH B 33 139 139 HOH HOH . J 3 HOH B 34 143 143 HOH HOH . J 3 HOH B 35 154 154 HOH HOH . J 3 HOH B 36 156 156 HOH HOH . J 3 HOH B 37 158 158 HOH HOH . J 3 HOH B 38 177 177 HOH HOH . J 3 HOH B 39 183 183 HOH HOH . J 3 HOH B 40 189 189 HOH HOH . J 3 HOH B 41 190 190 HOH HOH . J 3 HOH B 42 191 191 HOH HOH . J 3 HOH B 43 194 194 HOH HOH . J 3 HOH B 44 198 198 HOH HOH . J 3 HOH B 45 200 200 HOH HOH . K 3 HOH C 1 9 9 HOH HOH . K 3 HOH C 2 11 11 HOH HOH . K 3 HOH C 3 12 12 HOH HOH . K 3 HOH C 4 13 13 HOH HOH . K 3 HOH C 5 16 16 HOH HOH . K 3 HOH C 6 18 18 HOH HOH . K 3 HOH C 7 28 28 HOH HOH . K 3 HOH C 8 30 30 HOH HOH . K 3 HOH C 9 31 31 HOH HOH . K 3 HOH C 10 34 34 HOH HOH . K 3 HOH C 11 38 38 HOH HOH . K 3 HOH C 12 42 42 HOH HOH . K 3 HOH C 13 45 45 HOH HOH . K 3 HOH C 14 47 47 HOH HOH . K 3 HOH C 15 57 57 HOH HOH . K 3 HOH C 16 62 62 HOH HOH . K 3 HOH C 17 64 64 HOH HOH . K 3 HOH C 18 67 67 HOH HOH . K 3 HOH C 19 72 72 HOH HOH . K 3 HOH C 20 76 76 HOH HOH . K 3 HOH C 21 78 78 HOH HOH . K 3 HOH C 22 80 80 HOH HOH . K 3 HOH C 23 92 92 HOH HOH . K 3 HOH C 24 95 95 HOH HOH . K 3 HOH C 25 97 97 HOH HOH . K 3 HOH C 26 99 99 HOH HOH . K 3 HOH C 27 101 101 HOH HOH . K 3 HOH C 28 105 105 HOH HOH . K 3 HOH C 29 107 107 HOH HOH . K 3 HOH C 30 111 111 HOH HOH . K 3 HOH C 31 114 114 HOH HOH . K 3 HOH C 32 119 119 HOH HOH . K 3 HOH C 33 121 121 HOH HOH . K 3 HOH C 34 123 123 HOH HOH . K 3 HOH C 35 124 124 HOH HOH . K 3 HOH C 36 126 126 HOH HOH . K 3 HOH C 37 128 128 HOH HOH . K 3 HOH C 38 129 129 HOH HOH . K 3 HOH C 39 134 134 HOH HOH . K 3 HOH C 40 136 136 HOH HOH . K 3 HOH C 41 140 140 HOH HOH . K 3 HOH C 42 147 147 HOH HOH . K 3 HOH C 43 153 153 HOH HOH . K 3 HOH C 44 163 163 HOH HOH . K 3 HOH C 45 164 164 HOH HOH . K 3 HOH C 46 166 166 HOH HOH . K 3 HOH C 47 167 167 HOH HOH . K 3 HOH C 48 170 170 HOH HOH . K 3 HOH C 49 178 178 HOH HOH . K 3 HOH C 50 182 182 HOH HOH . K 3 HOH C 51 184 184 HOH HOH . K 3 HOH C 52 185 185 HOH HOH . K 3 HOH C 53 186 186 HOH HOH . K 3 HOH C 54 192 192 HOH HOH . K 3 HOH C 55 195 195 HOH HOH . K 3 HOH C 56 196 196 HOH HOH . K 3 HOH C 57 199 199 HOH HOH . L 3 HOH D 1 3 3 HOH HOH . L 3 HOH D 2 5 5 HOH HOH . L 3 HOH D 3 7 7 HOH HOH . L 3 HOH D 4 8 8 HOH HOH . L 3 HOH D 5 22 22 HOH HOH . L 3 HOH D 6 32 32 HOH HOH . L 3 HOH D 7 35 35 HOH HOH . L 3 HOH D 8 40 40 HOH HOH . L 3 HOH D 9 41 41 HOH HOH . L 3 HOH D 10 43 43 HOH HOH . L 3 HOH D 11 48 48 HOH HOH . L 3 HOH D 12 51 51 HOH HOH . L 3 HOH D 13 53 53 HOH HOH . L 3 HOH D 14 58 58 HOH HOH . L 3 HOH D 15 59 59 HOH HOH . L 3 HOH D 16 63 63 HOH HOH . L 3 HOH D 17 70 70 HOH HOH . L 3 HOH D 18 77 77 HOH HOH . L 3 HOH D 19 83 83 HOH HOH . L 3 HOH D 20 85 85 HOH HOH . L 3 HOH D 21 91 91 HOH HOH . L 3 HOH D 22 100 100 HOH HOH . L 3 HOH D 23 102 102 HOH HOH . L 3 HOH D 24 103 103 HOH HOH . L 3 HOH D 25 115 115 HOH HOH . L 3 HOH D 26 117 117 HOH HOH . L 3 HOH D 27 131 131 HOH HOH . L 3 HOH D 28 132 132 HOH HOH . L 3 HOH D 29 138 138 HOH HOH . L 3 HOH D 30 142 142 HOH HOH . L 3 HOH D 31 145 145 HOH HOH . L 3 HOH D 32 148 148 HOH HOH . L 3 HOH D 33 151 151 HOH HOH . L 3 HOH D 34 152 152 HOH HOH . L 3 HOH D 35 155 155 HOH HOH . L 3 HOH D 36 159 159 HOH HOH . L 3 HOH D 37 160 160 HOH HOH . L 3 HOH D 38 161 161 HOH HOH . L 3 HOH D 39 162 162 HOH HOH . L 3 HOH D 40 165 165 HOH HOH . L 3 HOH D 41 168 168 HOH HOH . L 3 HOH D 42 171 171 HOH HOH . L 3 HOH D 43 172 172 HOH HOH . L 3 HOH D 44 173 173 HOH HOH . L 3 HOH D 45 174 174 HOH HOH . L 3 HOH D 46 179 179 HOH HOH . L 3 HOH D 47 193 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . G 2 63.548 48.103 18.618 1 20.39 ? C1 STI 600 C 1 HETATM 2 C C6 STI . . . G 2 63.029 48.833 17.54 1 20.45 ? C6 STI 600 C 1 HETATM 3 C C5 STI . . . G 2 63.32 50.231 17.432 1 24.64 ? C5 STI 600 C 1 HETATM 4 C C4 STI . . . G 2 64.156 50.835 18.369 1 18.73 ? C4 STI 600 C 1 HETATM 5 N N3 STI . . . G 2 64.675 50.084 19.427 1 24.53 ? N3 STI 600 C 1 HETATM 6 C C2 STI . . . G 2 64.367 48.767 19.51 1 20.87 ? C2 STI 600 C 1 HETATM 7 C C7 STI . . . G 2 62.824 51.103 16.297 1 22.86 ? C7 STI 600 C 1 HETATM 8 C C12 STI . . . G 2 62.228 50.578 15.221 1 21.4 ? C12 STI 600 C 1 HETATM 9 C C11 STI . . . G 2 61.87 51.497 14.199 1 26.24 ? C11 STI 600 C 1 HETATM 10 N N10 STI . . . G 2 62.129 52.806 14.358 1 27.95 ? N10 STI 600 C 1 HETATM 11 C C9 STI . . . G 2 62.74 53.258 15.47 1 23.59 ? C9 STI 600 C 1 HETATM 12 N N8 STI . . . G 2 63.142 52.427 16.443 1 20.27 ? N8 STI 600 C 1 HETATM 13 N N13 STI . . . G 2 63.014 54.584 15.722 1 21 ? N13 STI 600 C 1 HETATM 14 C C14 STI . . . G 2 62.873 55.497 14.695 1 25.04 ? C14 STI 600 C 1 HETATM 15 C C19 STI . . . G 2 63.837 55.724 13.68 1 25.92 ? C19 STI 600 C 1 HETATM 16 C C18 STI . . . G 2 63.525 56.73 12.757 1 24.57 ? C18 STI 600 C 1 HETATM 17 C C17 STI . . . G 2 62.321 57.478 12.8 1 22.27 ? C17 STI 600 C 1 HETATM 18 C C16 STI . . . G 2 61.374 57.263 13.776 1 25.05 ? C16 STI 600 C 1 HETATM 19 C C15 STI . . . G 2 61.684 56.277 14.713 1 26.04 ? C15 STI 600 C 1 HETATM 20 N N21 STI . . . G 2 60.18 58.095 13.721 1 26.37 ? N21 STI 600 C 1 HETATM 21 C C22 STI . . . G 2 59.306 58.323 14.728 1 28.39 ? C22 STI 600 C 1 HETATM 22 C C23 STI . . . G 2 58.386 59.495 14.736 1 27.2 ? C23 STI 600 C 1 HETATM 23 C C25 STI . . . G 2 57.57 59.755 15.852 1 29.27 ? C25 STI 600 C 1 HETATM 24 C C26 STI . . . G 2 56.631 60.819 15.898 1 28.11 ? C26 STI 600 C 1 HETATM 25 C C27 STI . . . G 2 56.506 61.663 14.799 1 30.32 ? C27 STI 600 C 1 HETATM 26 C C28 STI . . . G 2 57.267 61.396 13.672 1 30.15 ? C28 STI 600 C 1 HETATM 27 C C29 STI . . . G 2 58.195 60.322 13.618 1 30.41 ? C29 STI 600 C 1 HETATM 28 C C46 STI . . . G 2 55.517 62.798 14.826 1 30 ? C46 STI 600 C 1 HETATM 29 N N48 STI . . . G 2 54.666 62.822 13.65 1 32.91 ? N48 STI 600 C 1 HETATM 30 C C53 STI . . . G 2 53.928 61.56 13.527 1 30.85 ? C53 STI 600 C 1 HETATM 31 C C52 STI . . . G 2 53.053 61.596 12.214 1 33.28 ? C52 STI 600 C 1 HETATM 32 N N51 STI . . . G 2 52.257 62.838 12.23 1 31.95 ? N51 STI 600 C 1 HETATM 33 C C54 STI . . . G 2 51.629 62.812 10.925 1 28.46 ? C54 STI 600 C 1 HETATM 34 C C50 STI . . . G 2 53.092 63.991 12.358 1 28.95 ? C50 STI 600 C 1 HETATM 35 C C49 STI . . . G 2 53.732 63.952 13.76 1 32.11 ? C49 STI 600 C 1 HETATM 36 O O29 STI . . . G 2 59.204 57.566 15.648 1 29.22 ? O29 STI 600 C 1 HETATM 37 C C20 STI . . . G 2 65.176 54.981 13.526 1 23.03 ? C20 STI 600 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 37 #