data_2HZA # _model_server_result.job_id JnrpMXWei2oERai11ZpsUw _model_server_result.datetime_utc '2024-11-26 03:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 2HZA # _exptl.entry_id 2HZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.52 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '3-CYCLOHEXYLPROPYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HZA _cell.length_a 49.843 _cell.length_b 49.843 _cell.length_c 181.691 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLN 2 A GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C ASP 104 A ASP 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 105 A MSE 105 1_555 A N GLY 106 A GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C MSE 1 B MSE 1 1_555 B N GLN 2 B GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C ASP 104 B ASP 104 1_555 B N MSE 105 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C MSE 105 B MSE 105 1_555 B N GLY 106 B GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A NE2 HIS 76 A HIS 76 4_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A NE2 HIS 87 A HIS 87 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 A ND1 HIS 89 A HIS 89 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A SG CYS 95 A CYS 95 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 C NI NI . A NI 302 1_555 B NE2 HIS 76 B HIS 76 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc6 B NE2 HIS 87 B HIS 87 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 B ND1 HIS 89 B HIS 89 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc8 B SG CYS 95 B CYS 95 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C21 H38 O11' _chem_comp.formula_weight 466.52 _chem_comp.id 3CM _chem_comp.mon_nstd_flag . _chem_comp.name '3-CYCLOHEXYLPROPYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms CYMAL-3 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O5 3CM sing 1 n n C1 H1 3CM sing 2 n n C1 O1 3CM sing 3 n n C1 C2 3CM sing 4 n n C2 H2 3CM sing 5 n n C2 O2 3CM sing 6 n n C2 C3 3CM sing 7 n n C3 H3 3CM sing 8 n n C3 O3 3CM sing 9 n n C3 C4 3CM sing 10 n n C4 C5 3CM sing 11 n n C4 H4 3CM sing 12 n n C4 O4 3CM sing 13 n n C5 C6 3CM sing 14 n n C5 H5 3CM sing 15 n n C5 O5 3CM sing 16 n n C6 O6 3CM sing 17 n n C6 H61 3CM sing 18 n n C6 H62A 3CM sing 19 n n O2 HO2 3CM sing 20 n n O3 HO3 3CM sing 21 n n O6 HO6 3CM sing 22 n n O1 C40 3CM sing 23 n n O4 HO4 3CM sing 24 n n C10 C20 3CM sing 25 n n C10 H10 3CM sing 26 n n C10 O10 3CM sing 27 n n C10 O50 3CM sing 28 n n C20 C30 3CM sing 29 n n C20 H20 3CM sing 30 n n C20 O20 3CM sing 31 n n C30 C40 3CM sing 32 n n C30 H30 3CM sing 33 n n C30 O30 3CM sing 34 n n C40 H40 3CM sing 35 n n C40 C50 3CM sing 36 n n C50 O50 3CM sing 37 n n C50 H50 3CM sing 38 n n C50 C60 3CM sing 39 n n C60 H601 3CM sing 40 n n C60 H602 3CM sing 41 n n C60 O60 3CM sing 42 n n O10 C11 3CM sing 43 n n O20 HO20 3CM sing 44 n n O30 HO30 3CM sing 45 n n O60 HO60 3CM sing 46 n n C11 H111 3CM sing 47 n n C11 H112 3CM sing 48 n n C11 C21 3CM sing 49 n n C21 H211 3CM sing 50 n n C21 H212 3CM sing 51 n n C21 C31 3CM sing 52 n n C31 H311 3CM sing 53 n n C31 H312 3CM sing 54 n n C31 C12 3CM sing 55 n n C12 H12 3CM sing 56 n n C12 C22 3CM sing 57 n n C12 C62 3CM sing 58 n n C22 H6 3CM sing 59 n n C22 C32 3CM sing 60 n n C22 H22 3CM sing 61 n n C32 H7 3CM sing 62 n n C32 C42 3CM sing 63 n n C32 H32 3CM sing 64 n n C42 H421 3CM sing 65 n n C42 H422 3CM sing 66 n n C42 C52 3CM sing 67 n n C52 H8 3CM sing 68 n n C52 C62 3CM sing 69 n n C52 H52 3CM sing 70 n n C62 H9 3CM sing 71 n n C62 H62 3CM sing 72 n n # _atom_sites.entry_id 2HZA _atom_sites.fract_transf_matrix[1][1] 0.020063 _atom_sites.fract_transf_matrix[1][2] 0.011583 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 302 2 NI NI . D 3 3CM B 1 201 1 3CM 3CM . E 2 NI B 1 301 1 NI NI . F 4 HOH A 1 303 1 HOH HOH . F 4 HOH A 2 304 5 HOH HOH . F 4 HOH A 3 305 8 HOH HOH . F 4 HOH A 4 306 9 HOH HOH . F 4 HOH A 5 307 10 HOH HOH . F 4 HOH A 6 308 14 HOH HOH . F 4 HOH A 7 309 16 HOH HOH . F 4 HOH A 8 310 17 HOH HOH . F 4 HOH A 9 311 18 HOH HOH . F 4 HOH A 10 312 20 HOH HOH . G 4 HOH B 1 302 2 HOH HOH . G 4 HOH B 2 303 3 HOH HOH . G 4 HOH B 3 304 4 HOH HOH . G 4 HOH B 4 305 6 HOH HOH . G 4 HOH B 5 306 7 HOH HOH . G 4 HOH B 6 307 11 HOH HOH . G 4 HOH B 7 308 12 HOH HOH . G 4 HOH B 8 309 13 HOH HOH . G 4 HOH B 9 310 15 HOH HOH . G 4 HOH B 10 311 19 HOH HOH . G 4 HOH B 11 312 21 HOH HOH . G 4 HOH B 12 313 22 HOH HOH . G 4 HOH B 13 314 23 HOH HOH . G 4 HOH B 14 315 24 HOH HOH . G 4 HOH B 15 316 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3CM . . . D 3 9.755 36.603 21.082 1 88.4 ? C1 3CM 201 B 1 HETATM 2 C C2 3CM . . . D 3 10.348 35.388 20.302 1 89.42 ? C2 3CM 201 B 1 HETATM 3 C C3 3CM . . . D 3 10.905 34.383 21.305 1 90.07 ? C3 3CM 201 B 1 HETATM 4 C C4 3CM . . . D 3 11.974 35.056 22.187 1 90.81 ? C4 3CM 201 B 1 HETATM 5 C C5 3CM . . . D 3 11.342 36.281 22.912 1 90.42 ? C5 3CM 201 B 1 HETATM 6 C C6 3CM . . . D 3 12.358 37.013 23.761 1 89.04 ? C6 3CM 201 B 1 HETATM 7 O O2 3CM . . . D 3 9.296 34.806 19.466 1 88.26 ? O2 3CM 201 B 1 HETATM 8 O O3 3CM . . . D 3 11.461 33.272 20.564 1 89.68 ? O3 3CM 201 B 1 HETATM 9 O O5 3CM . . . D 3 10.788 37.19 21.946 1 89.93 ? O5 3CM 201 B 1 HETATM 10 O O6 3CM . . . D 3 13.238 37.792 22.952 1 91.27 ? O6 3CM 201 B 1 HETATM 11 O O1 3CM . . . D 3 8.69 36.087 21.881 1 88.43 ? O1 3CM 201 B 1 HETATM 12 O O4 3CM . . . D 3 12.471 34.152 23.154 1 86.69 ? O4 3CM 201 B 1 HETATM 13 C C10 3CM . . . D 3 4.837 36.954 23.178 1 85.09 ? C10 3CM 201 B 1 HETATM 14 C C20 3CM . . . D 3 4.965 36.48 21.713 1 87.56 ? C20 3CM 201 B 1 HETATM 15 C C30 3CM . . . D 3 6.313 35.764 21.603 1 87.99 ? C30 3CM 201 B 1 HETATM 16 C C40 3CM . . . D 3 7.405 36.759 21.988 1 87.62 ? C40 3CM 201 B 1 HETATM 17 C C50 3CM . . . D 3 7.216 37.245 23.405 1 85.87 ? C50 3CM 201 B 1 HETATM 18 C C60 3CM . . . D 3 8.25 38.292 23.85 1 81.59 ? C60 3CM 201 B 1 HETATM 19 O O10 3CM . . . D 3 3.613 37.641 23.337 1 87.4 ? O10 3CM 201 B 1 HETATM 20 O O20 3CM . . . D 3 3.914 35.605 21.372 1 83.06 ? O20 3CM 201 B 1 HETATM 21 O O30 3CM . . . D 3 6.492 35.316 20.263 1 87.02 ? O30 3CM 201 B 1 HETATM 22 O O50 3CM . . . D 3 5.92 37.851 23.534 1 86.6 ? O50 3CM 201 B 1 HETATM 23 O O60 3CM . . . D 3 8.387 38.229 25.292 1 82.74 ? O60 3CM 201 B 1 HETATM 24 C C11 3CM . . . D 3 3.013 37.465 24.637 1 80.2 ? C11 3CM 201 B 1 HETATM 25 C C21 3CM . . . D 3 1.603 37.991 24.562 1 75.75 ? C21 3CM 201 B 1 HETATM 26 C C31 3CM . . . D 3 0.769 36.977 25.344 1 76.49 ? C31 3CM 201 B 1 HETATM 27 C C12 3CM . . . D 3 -0.702 37.15 25.02 1 74.11 ? C12 3CM 201 B 1 HETATM 28 C C22 3CM . . . D 3 -1.497 37.226 26.313 1 71.78 ? C22 3CM 201 B 1 HETATM 29 C C32 3CM . . . D 3 -2.838 36.539 26.348 1 75.45 ? C32 3CM 201 B 1 HETATM 30 C C42 3CM . . . D 3 -3.567 36.388 25.001 1 70.16 ? C42 3CM 201 B 1 HETATM 31 C C52 3CM . . . D 3 -2.66 35.773 23.925 1 74.91 ? C52 3CM 201 B 1 HETATM 32 C C62 3CM . . . D 3 -1.136 36.045 24.067 1 72.97 ? C62 3CM 201 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #