data_2HZH # _model_server_result.job_id DYO36zeqslPDFRaMQMGFkg _model_server_result.datetime_utc '2024-11-22 10:45:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 2HZH # _exptl.entry_id 2HZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HZH _cell.length_a 168.93 _cell.length_b 168.93 _cell.length_c 69.35 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 85 1_555 A SG CYS 488 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 117 A CYS 117 1_555 A SG CYS 205 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 436 A ASN 436 1_555 D C1 MAN . A MAN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A NE2 HIS 64 A HIS 64 1_555 J CU CU . A CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc2 A ND1 HIS 66 A HIS 66 1_555 I CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A NE2 HIS 109 A HIS 109 1_555 I CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 A NE2 HIS 111 A HIS 111 1_555 H CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc5 A NE2 HIS 398 A HIS 398 1_555 J CU CU . A CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc6 A NE2 HIS 400 A HIS 400 1_555 H CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 A NE2 HIS 452 A HIS 452 1_555 H CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc8 A NE2 HIS 454 A HIS 454 1_555 I CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 A ND1 HIS 458 A HIS 458 1_555 G CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc10 H CU CU . A CU 602 1_555 K O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2HZH _atom_sites.fract_transf_matrix[1][1] 0.00592 _atom_sites.fract_transf_matrix[1][2] 0.003418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDG A 1 501 501 NDG NAG . C 2 NDG A 1 502 502 NDG NAG . D 3 MAN A 1 503 503 MAN MAN . E 4 NAG A 1 504 504 NAG NAG . F 4 NAG A 1 505 505 NAG NAG . G 5 CU A 1 601 601 CU CU . H 5 CU A 1 602 602 CU CU . I 5 CU A 1 603 603 CU CU . J 5 CU A 1 604 604 CU CU . K 6 HOH A 1 605 1 HOH HOH . K 6 HOH A 2 606 2 HOH HOH . K 6 HOH A 3 607 3 HOH HOH . K 6 HOH A 4 608 4 HOH HOH . K 6 HOH A 5 609 5 HOH HOH . K 6 HOH A 6 610 6 HOH HOH . K 6 HOH A 7 611 7 HOH HOH . K 6 HOH A 8 612 8 HOH HOH . K 6 HOH A 9 613 9 HOH HOH . K 6 HOH A 10 614 10 HOH HOH . K 6 HOH A 11 615 11 HOH HOH . K 6 HOH A 12 616 12 HOH HOH . K 6 HOH A 13 617 13 HOH HOH . K 6 HOH A 14 618 14 HOH HOH . K 6 HOH A 15 619 15 HOH HOH . K 6 HOH A 16 620 16 HOH HOH . K 6 HOH A 17 621 17 HOH HOH . K 6 HOH A 18 622 18 HOH HOH . K 6 HOH A 19 623 19 HOH HOH . K 6 HOH A 20 624 20 HOH HOH . K 6 HOH A 21 625 21 HOH HOH . K 6 HOH A 22 626 22 HOH HOH . K 6 HOH A 23 627 23 HOH HOH . K 6 HOH A 24 628 24 HOH HOH . K 6 HOH A 25 629 25 HOH HOH . K 6 HOH A 26 630 26 HOH HOH . K 6 HOH A 27 631 27 HOH HOH . K 6 HOH A 28 632 28 HOH HOH . K 6 HOH A 29 633 29 HOH HOH . K 6 HOH A 30 634 30 HOH HOH . K 6 HOH A 31 635 31 HOH HOH . K 6 HOH A 32 636 32 HOH HOH . K 6 HOH A 33 637 33 HOH HOH . K 6 HOH A 34 638 34 HOH HOH . K 6 HOH A 35 639 35 HOH HOH . K 6 HOH A 36 640 37 HOH HOH . K 6 HOH A 37 641 39 HOH HOH . K 6 HOH A 38 642 40 HOH HOH . K 6 HOH A 39 643 41 HOH HOH . K 6 HOH A 40 644 42 HOH HOH . K 6 HOH A 41 645 43 HOH HOH . K 6 HOH A 42 646 44 HOH HOH . K 6 HOH A 43 647 45 HOH HOH . K 6 HOH A 44 648 46 HOH HOH . K 6 HOH A 45 649 47 HOH HOH . K 6 HOH A 46 650 48 HOH HOH . K 6 HOH A 47 651 49 HOH HOH . K 6 HOH A 48 652 50 HOH HOH . K 6 HOH A 49 653 51 HOH HOH . K 6 HOH A 50 654 53 HOH HOH . K 6 HOH A 51 655 54 HOH HOH . K 6 HOH A 52 656 56 HOH HOH . K 6 HOH A 53 657 57 HOH HOH . K 6 HOH A 54 658 58 HOH HOH . K 6 HOH A 55 659 59 HOH HOH . K 6 HOH A 56 660 60 HOH HOH . K 6 HOH A 57 661 61 HOH HOH . K 6 HOH A 58 662 62 HOH HOH . K 6 HOH A 59 663 65 HOH HOH . K 6 HOH A 60 664 66 HOH HOH . K 6 HOH A 61 665 68 HOH HOH . K 6 HOH A 62 666 69 HOH HOH . K 6 HOH A 63 667 72 HOH HOH . K 6 HOH A 64 668 73 HOH HOH . K 6 HOH A 65 669 75 HOH HOH . K 6 HOH A 66 670 76 HOH HOH . K 6 HOH A 67 671 77 HOH HOH . K 6 HOH A 68 672 78 HOH HOH . K 6 HOH A 69 673 79 HOH HOH . K 6 HOH A 70 674 80 HOH HOH . K 6 HOH A 71 675 82 HOH HOH . K 6 HOH A 72 676 83 HOH HOH . K 6 HOH A 73 677 84 HOH HOH . K 6 HOH A 74 678 85 HOH HOH . K 6 HOH A 75 679 86 HOH HOH . K 6 HOH A 76 680 87 HOH HOH . K 6 HOH A 77 681 88 HOH HOH . K 6 HOH A 78 682 90 HOH HOH . K 6 HOH A 79 683 91 HOH HOH . K 6 HOH A 80 684 93 HOH HOH . K 6 HOH A 81 685 94 HOH HOH . K 6 HOH A 82 686 95 HOH HOH . K 6 HOH A 83 687 100 HOH HOH . K 6 HOH A 84 688 103 HOH HOH . K 6 HOH A 85 689 104 HOH HOH . K 6 HOH A 86 690 106 HOH HOH . K 6 HOH A 87 691 107 HOH HOH . K 6 HOH A 88 692 108 HOH HOH . K 6 HOH A 89 693 109 HOH HOH . K 6 HOH A 90 694 110 HOH HOH . K 6 HOH A 91 695 112 HOH HOH . K 6 HOH A 92 696 113 HOH HOH . K 6 HOH A 93 697 114 HOH HOH . K 6 HOH A 94 698 115 HOH HOH . K 6 HOH A 95 699 117 HOH HOH . K 6 HOH A 96 700 120 HOH HOH . K 6 HOH A 97 701 121 HOH HOH . K 6 HOH A 98 702 122 HOH HOH . K 6 HOH A 99 703 123 HOH HOH . K 6 HOH A 100 704 124 HOH HOH . K 6 HOH A 101 705 125 HOH HOH . K 6 HOH A 102 706 127 HOH HOH . K 6 HOH A 103 707 129 HOH HOH . K 6 HOH A 104 708 132 HOH HOH . K 6 HOH A 105 709 133 HOH HOH . K 6 HOH A 106 710 134 HOH HOH . K 6 HOH A 107 711 135 HOH HOH . K 6 HOH A 108 712 136 HOH HOH . K 6 HOH A 109 713 137 HOH HOH . K 6 HOH A 110 714 138 HOH HOH . K 6 HOH A 111 715 139 HOH HOH . K 6 HOH A 112 716 141 HOH HOH . K 6 HOH A 113 717 142 HOH HOH . K 6 HOH A 114 718 143 HOH HOH . K 6 HOH A 115 719 144 HOH HOH . K 6 HOH A 116 720 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 -26.743 -37.961 -7.946 1 61.1 ? C1 NAG 504 A 1 HETATM 2 C C2 NAG . . . E 4 -26.178 -38.805 -9.075 1 60.66 ? C2 NAG 504 A 1 HETATM 3 C C3 NAG . . . E 4 -24.72 -39.09 -8.723 1 61.16 ? C3 NAG 504 A 1 HETATM 4 C C4 NAG . . . E 4 -23.936 -37.782 -8.541 1 61.9 ? C4 NAG 504 A 1 HETATM 5 C C5 NAG . . . E 4 -24.739 -36.626 -7.91 1 62.06 ? C5 NAG 504 A 1 HETATM 6 C C6 NAG . . . E 4 -24.264 -35.321 -8.541 1 62.34 ? C6 NAG 504 A 1 HETATM 7 C C7 NAG . . . E 4 -27.374 -40.406 -10.488 1 58.27 ? C7 NAG 504 A 1 HETATM 8 C C8 NAG . . . E 4 -28.099 -41.716 -10.543 1 57.64 ? C8 NAG 504 A 1 HETATM 9 N N2 NAG . . . E 4 -26.971 -40.006 -9.279 1 59.41 ? N2 NAG 504 A 1 HETATM 10 O O3 NAG . . . E 4 -24.128 -39.843 -9.753 1 61.03 ? O3 NAG 504 A 1 HETATM 11 O O4 NAG . . . E 4 -22.764 -38.009 -7.774 1 62.18 ? O4 NAG 504 A 1 HETATM 12 O O5 NAG . . . E 4 -26.156 -36.682 -8.07 1 61.64 ? O5 NAG 504 A 1 HETATM 13 O O6 NAG . . . E 4 -24.457 -34.271 -7.624 1 62.22 ? O6 NAG 504 A 1 HETATM 14 O O7 NAG . . . E 4 -27.183 -39.775 -11.528 1 57.35 ? O7 NAG 504 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #