data_2I0D # _model_server_result.job_id HbhcyFQKEWJVh9H8bioNHg _model_server_result.datetime_utc '2025-03-06 03:39:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":200}' # _entry.id 2I0D # _exptl.entry_id 2I0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 637.743 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-3-(3-ACETYLPHENYL)-N-[(1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL]-2-OXO-1,3-OXAZOLIDINE-5-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I0D _cell.length_a 50.778 _cell.length_b 58.314 _cell.length_c 61.693 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H39 N3 O8 S' _chem_comp.formula_weight 637.743 _chem_comp.id MUT _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-3-(3-ACETYLPHENYL)-N-[(1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL]-2-OXO-1,3-OXAZOLIDINE-5-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 S8 MUT doub 243 n n S8 O10 MUT doub 244 n n S8 N11 MUT sing 245 n n S8 C5 MUT sing 246 n n C5 C4 MUT doub 247 n y C5 C6 MUT sing 248 n y C4 C3 MUT sing 249 n y C4 H4 MUT sing 250 n n C3 C2 MUT doub 251 n y C3 H3 MUT sing 252 n n C2 C7 MUT sing 253 n y C2 O19 MUT sing 254 n n O19 C18 MUT sing 255 n n C18 H181 MUT sing 256 n n C18 H182 MUT sing 257 n n C18 H183 MUT sing 258 n n C7 C6 MUT doub 259 n y C7 H7 MUT sing 260 n n C6 H6 MUT sing 261 n n N11 C16 MUT sing 262 n n N11 C12 MUT sing 263 n n C12 C13 MUT sing 264 n n C12 H121 MUT sing 265 n n C12 H122 MUT sing 266 n n C13 C14 MUT sing 267 n n C13 C15 MUT sing 268 n n C13 H13 MUT sing 269 n n C14 H141 MUT sing 270 n n C14 H142 MUT sing 271 n n C14 H143 MUT sing 272 n n C15 H151 MUT sing 273 n n C15 H152 MUT sing 274 n n C15 H153 MUT sing 275 n n C16 C17 MUT sing 276 n n C16 H161 MUT sing 277 n n C16 H162 MUT sing 278 n n C17 C19 MUT sing 279 n n C17 O18 MUT sing 280 n n C17 H17 MUT sing 281 n n O18 HO18 MUT sing 282 n n C19 N20 MUT sing 283 n n C19 C32 MUT sing 284 n n C19 H19 MUT sing 285 n n C32 C38 MUT sing 286 n n C32 H321 MUT sing 287 n n C32 H322 MUT sing 288 n n C38 C37 MUT doub 289 n y C38 C33 MUT sing 290 n y C33 C34 MUT doub 291 n y C33 H33 MUT sing 292 n n C34 C35 MUT sing 293 n y C34 H34 MUT sing 294 n n C35 C36 MUT doub 295 n y C35 H35 MUT sing 296 n n C36 C37 MUT sing 297 n y C36 H36 MUT sing 298 n n C37 H37 MUT sing 299 n n N20 C21 MUT sing 300 n n N20 HN20 MUT sing 301 n n C21 C29 MUT sing 302 n n C21 O22 MUT doub 303 n n C29 C25 MUT sing 304 n n C29 O28 MUT sing 305 n n C29 H29 MUT sing 306 n n O28 C26 MUT sing 307 n n C26 N24 MUT sing 308 n n C26 O27 MUT doub 309 n n C25 N24 MUT sing 310 n n C25 H251 MUT sing 311 n n C25 H252 MUT sing 312 n n N24 C43 MUT sing 313 n n C43 C42 MUT doub 314 n y C43 C44 MUT sing 315 n y C44 C45 MUT doub 316 n y C44 H44 MUT sing 317 n n C45 C40 MUT sing 318 n y C45 H45 MUT sing 319 n n C40 C41 MUT doub 320 n y C40 H40 MUT sing 321 n n C42 C41 MUT sing 322 n y C42 H42 MUT sing 323 n n C41 C46 MUT sing 324 n n C46 C47 MUT sing 325 n n C46 O45 MUT doub 326 n n C47 H471 MUT sing 327 n n C47 H472 MUT sing 328 n n C47 H473 MUT sing 329 n n # _atom_sites.entry_id 2I0D _atom_sites.fract_transf_matrix[1][1] 0.019694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 503 503 PO4 PO4 . D 2 PO4 A 1 504 504 PO4 PO4 . E 3 MUT A 1 200 200 MUT MUT . F 2 PO4 B 1 501 501 PO4 PO4 . G 2 PO4 B 1 502 502 PO4 PO4 . H 4 ACT B 1 505 505 ACT ACT . I 5 HOH A 1 505 2 HOH WAT . I 5 HOH A 2 506 3 HOH WAT . I 5 HOH A 3 507 4 HOH WAT . I 5 HOH A 4 508 5 HOH WAT . I 5 HOH A 5 509 6 HOH WAT . I 5 HOH A 6 510 10 HOH WAT . I 5 HOH A 7 511 12 HOH WAT . I 5 HOH A 8 512 14 HOH WAT . I 5 HOH A 9 513 16 HOH WAT . I 5 HOH A 10 514 17 HOH WAT . I 5 HOH A 11 515 20 HOH WAT . I 5 HOH A 12 516 24 HOH WAT . I 5 HOH A 13 517 26 HOH WAT . I 5 HOH A 14 518 27 HOH WAT . I 5 HOH A 15 519 28 HOH WAT . I 5 HOH A 16 520 30 HOH WAT . I 5 HOH A 17 521 33 HOH WAT . I 5 HOH A 18 522 34 HOH WAT . I 5 HOH A 19 523 36 HOH WAT . I 5 HOH A 20 524 38 HOH WAT . I 5 HOH A 21 525 39 HOH WAT . I 5 HOH A 22 526 41 HOH WAT . I 5 HOH A 23 527 42 HOH WAT . I 5 HOH A 24 528 45 HOH WAT . I 5 HOH A 25 529 48 HOH WAT . I 5 HOH A 26 530 55 HOH WAT . I 5 HOH A 27 531 56 HOH WAT . I 5 HOH A 28 532 58 HOH WAT . I 5 HOH A 29 533 61 HOH WAT . I 5 HOH A 30 534 62 HOH WAT . I 5 HOH A 31 535 66 HOH WAT . I 5 HOH A 32 536 67 HOH WAT . I 5 HOH A 33 537 69 HOH WAT . I 5 HOH A 34 538 79 HOH WAT . I 5 HOH A 35 539 80 HOH WAT . I 5 HOH A 36 540 81 HOH WAT . I 5 HOH A 37 541 82 HOH WAT . I 5 HOH A 38 542 83 HOH WAT . I 5 HOH A 39 543 84 HOH WAT . I 5 HOH A 40 544 85 HOH WAT . I 5 HOH A 41 545 86 HOH WAT . I 5 HOH A 42 546 87 HOH WAT . I 5 HOH A 43 547 88 HOH WAT . I 5 HOH A 44 548 89 HOH WAT . I 5 HOH A 45 549 90 HOH WAT . I 5 HOH A 46 550 91 HOH WAT . I 5 HOH A 47 551 92 HOH WAT . I 5 HOH A 48 552 93 HOH WAT . I 5 HOH A 49 553 94 HOH WAT . I 5 HOH A 50 554 95 HOH WAT . I 5 HOH A 51 555 106 HOH WAT . I 5 HOH A 52 556 107 HOH WAT . I 5 HOH A 53 557 109 HOH WAT . I 5 HOH A 54 558 110 HOH WAT . I 5 HOH A 55 559 111 HOH WAT . I 5 HOH A 56 560 112 HOH WAT . I 5 HOH A 57 561 113 HOH WAT . I 5 HOH A 58 562 114 HOH WAT . I 5 HOH A 59 563 115 HOH WAT . I 5 HOH A 60 564 116 HOH WAT . I 5 HOH A 61 565 117 HOH WAT . I 5 HOH A 62 566 118 HOH WAT . I 5 HOH A 63 567 119 HOH WAT . I 5 HOH A 64 568 120 HOH WAT . I 5 HOH A 65 569 124 HOH WAT . I 5 HOH A 66 570 125 HOH WAT . I 5 HOH A 67 571 127 HOH WAT . I 5 HOH A 68 572 128 HOH WAT . I 5 HOH A 69 573 129 HOH WAT . I 5 HOH A 70 574 130 HOH WAT . I 5 HOH A 71 575 131 HOH WAT . I 5 HOH A 72 576 132 HOH WAT . I 5 HOH A 73 577 133 HOH WAT . I 5 HOH A 74 578 134 HOH WAT . I 5 HOH A 75 579 135 HOH WAT . I 5 HOH A 76 580 136 HOH WAT . I 5 HOH A 77 581 137 HOH WAT . I 5 HOH A 78 582 138 HOH WAT . I 5 HOH A 79 583 139 HOH WAT . I 5 HOH A 80 584 140 HOH WAT . I 5 HOH A 81 585 142 HOH WAT . I 5 HOH A 82 586 143 HOH WAT . I 5 HOH A 83 587 144 HOH WAT . I 5 HOH A 84 588 145 HOH WAT . I 5 HOH A 85 589 150 HOH WAT . I 5 HOH A 86 590 153 HOH WAT . I 5 HOH A 87 591 154 HOH WAT . I 5 HOH A 88 592 155 HOH WAT . I 5 HOH A 89 593 156 HOH WAT . J 5 HOH B 1 506 1 HOH WAT . J 5 HOH B 2 507 7 HOH WAT . J 5 HOH B 3 508 8 HOH WAT . J 5 HOH B 4 509 9 HOH WAT . J 5 HOH B 5 510 11 HOH WAT . J 5 HOH B 6 511 13 HOH WAT . J 5 HOH B 7 512 15 HOH WAT . J 5 HOH B 8 513 18 HOH WAT . J 5 HOH B 9 514 19 HOH WAT . J 5 HOH B 10 515 21 HOH WAT . J 5 HOH B 11 516 22 HOH WAT . J 5 HOH B 12 517 23 HOH WAT . J 5 HOH B 13 518 25 HOH WAT . J 5 HOH B 14 519 29 HOH WAT . J 5 HOH B 15 520 31 HOH WAT . J 5 HOH B 16 521 32 HOH WAT . J 5 HOH B 17 522 35 HOH WAT . J 5 HOH B 18 523 37 HOH WAT . J 5 HOH B 19 524 40 HOH WAT . J 5 HOH B 20 525 43 HOH WAT . J 5 HOH B 21 526 44 HOH WAT . J 5 HOH B 22 527 46 HOH WAT . J 5 HOH B 23 528 47 HOH WAT . J 5 HOH B 24 529 49 HOH WAT . J 5 HOH B 25 530 50 HOH WAT . J 5 HOH B 26 531 51 HOH WAT . J 5 HOH B 27 532 52 HOH WAT . J 5 HOH B 28 533 53 HOH WAT . J 5 HOH B 29 534 54 HOH WAT . J 5 HOH B 30 535 57 HOH WAT . J 5 HOH B 31 536 59 HOH WAT . J 5 HOH B 32 537 60 HOH WAT . J 5 HOH B 33 538 63 HOH WAT . J 5 HOH B 34 539 64 HOH WAT . J 5 HOH B 35 540 65 HOH WAT . J 5 HOH B 36 541 68 HOH WAT . J 5 HOH B 37 542 70 HOH WAT . J 5 HOH B 38 543 71 HOH WAT . J 5 HOH B 39 544 72 HOH WAT . J 5 HOH B 40 545 73 HOH WAT . J 5 HOH B 41 546 74 HOH WAT . J 5 HOH B 42 547 75 HOH WAT . J 5 HOH B 43 548 76 HOH WAT . J 5 HOH B 44 549 77 HOH WAT . J 5 HOH B 45 550 78 HOH WAT . J 5 HOH B 46 551 96 HOH WAT . J 5 HOH B 47 552 97 HOH WAT . J 5 HOH B 48 553 98 HOH WAT . J 5 HOH B 49 554 99 HOH WAT . J 5 HOH B 50 555 100 HOH WAT . J 5 HOH B 51 556 101 HOH WAT . J 5 HOH B 52 557 102 HOH WAT . J 5 HOH B 53 558 103 HOH WAT . J 5 HOH B 54 559 104 HOH WAT . J 5 HOH B 55 560 105 HOH WAT . J 5 HOH B 56 561 108 HOH WAT . J 5 HOH B 57 562 121 HOH WAT . J 5 HOH B 58 563 122 HOH WAT . J 5 HOH B 59 564 123 HOH WAT . J 5 HOH B 60 565 141 HOH WAT . J 5 HOH B 61 566 146 HOH WAT . J 5 HOH B 62 567 147 HOH WAT . J 5 HOH B 63 568 148 HOH WAT . J 5 HOH B 64 569 149 HOH WAT . J 5 HOH B 65 570 151 HOH WAT . J 5 HOH B 66 571 152 HOH WAT . J 5 HOH B 67 572 157 HOH WAT . J 5 HOH B 68 573 158 HOH WAT . J 5 HOH B 69 574 159 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 MUT . . . E 3 18.471 33.379 13.733 1 29.8 ? O9 MUT 200 A 1 HETATM 2 S S8 MUT . . . E 3 17.942 32.507 14.763 1 30.57 ? S8 MUT 200 A 1 HETATM 3 O O10 MUT . . . E 3 17.176 31.447 14.162 1 28.27 ? O10 MUT 200 A 1 HETATM 4 C C5 MUT . . . E 3 17.035 33.396 15.781 1 28.99 ? C5 MUT 200 A 1 HETATM 5 C C4 MUT . . . E 3 17.294 34.762 15.963 1 28.13 ? C4 MUT 200 A 1 HETATM 6 C C3 MUT . . . E 3 16.562 35.543 16.859 1 27.84 ? C3 MUT 200 A 1 HETATM 7 C C2 MUT . . . E 3 15.567 34.944 17.651 1 29.4 ? C2 MUT 200 A 1 HETATM 8 O O19 MUT . . . E 3 14.856 35.651 18.586 1 28.45 ? O19 MUT 200 A 1 HETATM 9 C C18 MUT . . . E 3 15.038 37.055 18.795 1 28.17 ? C18 MUT 200 A 1 HETATM 10 C C7 MUT . . . E 3 15.32 33.579 17.507 1 28.84 ? C7 MUT 200 A 1 HETATM 11 C C6 MUT . . . E 3 16.055 32.813 16.588 1 27.43 ? C6 MUT 200 A 1 HETATM 12 N N11 MUT . . . E 3 19.218 31.838 15.499 1 31.27 ? N11 MUT 200 A 1 HETATM 13 C C12 MUT . . . E 3 19.988 32.799 16.332 1 33.19 ? C12 MUT 200 A 1 HETATM 14 C C13 MUT . . . E 3 21.474 32.433 16.321 1 30.91 ? C13 MUT 200 A 1 HETATM 15 C C14 MUT . . . E 3 22.063 32.393 14.912 1 31.86 ? C14 MUT 200 A 1 HETATM 16 C C15 MUT . . . E 3 22.299 33.386 17.177 1 30.15 ? C15 MUT 200 A 1 HETATM 17 C C16 MUT . . . E 3 18.936 30.552 16.162 1 29.6 ? C16 MUT 200 A 1 HETATM 18 C C17 MUT . . . E 3 19.83 29.452 15.571 1 28.53 ? C17 MUT 200 A 1 HETATM 19 O O18 MUT . . . E 3 19.76 28.294 16.423 1 31.3 ? O18 MUT 200 A 1 HETATM 20 C C19 MUT . . . E 3 19.395 29.167 14.12 1 28.51 ? C19 MUT 200 A 1 HETATM 21 C C32 MUT . . . E 3 18.056 28.415 14.007 1 28.57 ? C32 MUT 200 A 1 HETATM 22 C C38 MUT . . . E 3 17.768 28.079 12.548 1 30.47 ? C38 MUT 200 A 1 HETATM 23 C C33 MUT . . . E 3 17.954 26.785 12.051 1 29.13 ? C33 MUT 200 A 1 HETATM 24 C C34 MUT . . . E 3 17.722 26.483 10.718 1 31.13 ? C34 MUT 200 A 1 HETATM 25 C C35 MUT . . . E 3 17.276 27.474 9.847 1 29.54 ? C35 MUT 200 A 1 HETATM 26 C C36 MUT . . . E 3 17.094 28.761 10.334 1 30.71 ? C36 MUT 200 A 1 HETATM 27 C C37 MUT . . . E 3 17.335 29.066 11.675 1 28.95 ? C37 MUT 200 A 1 HETATM 28 N N20 MUT . . . E 3 20.34 28.3 13.395 1 28.99 ? N20 MUT 200 A 1 HETATM 29 C C21 MUT . . . E 3 21.039 28.755 12.351 1 31.56 ? C21 MUT 200 A 1 HETATM 30 O O22 MUT . . . E 3 21.042 29.931 12.026 1 29.06 ? O22 MUT 200 A 1 HETATM 31 C C29 MUT . . . E 3 21.848 27.784 11.528 1 30.52 ? C29 MUT 200 A 1 HETATM 32 O O28 MUT . . . E 3 21.836 26.469 12.084 1 30.2 ? O28 MUT 200 A 1 HETATM 33 C C26 MUT . . . E 3 21.458 25.568 11.016 1 30.94 ? C26 MUT 200 A 1 HETATM 34 O O27 MUT . . . E 3 21.527 24.366 11.213 1 31.12 ? O27 MUT 200 A 1 HETATM 35 C C25 MUT . . . E 3 21.206 27.688 10.121 1 28.37 ? C25 MUT 200 A 1 HETATM 36 N N24 MUT . . . E 3 21.132 26.245 9.91 1 30.26 ? N24 MUT 200 A 1 HETATM 37 C C43 MUT . . . E 3 20.779 25.665 8.659 1 28.33 ? C43 MUT 200 A 1 HETATM 38 C C44 MUT . . . E 3 21.218 24.393 8.284 1 29.02 ? C44 MUT 200 A 1 HETATM 39 C C45 MUT . . . E 3 20.849 23.824 7.061 1 29.9 ? C45 MUT 200 A 1 HETATM 40 C C40 MUT . . . E 3 20.04 24.523 6.178 1 28.72 ? C40 MUT 200 A 1 HETATM 41 C C42 MUT . . . E 3 19.968 26.358 7.75 1 29.07 ? C42 MUT 200 A 1 HETATM 42 C C41 MUT . . . E 3 19.597 25.799 6.528 1 28.5 ? C41 MUT 200 A 1 HETATM 43 C C46 MUT . . . E 3 18.697 26.594 5.576 1 29.52 ? C46 MUT 200 A 1 HETATM 44 O O45 MUT . . . E 3 18.309 27.706 5.908 1 29.92 ? O45 MUT 200 A 1 HETATM 45 C C47 MUT . . . E 3 18.295 25.99 4.265 1 29.56 ? C47 MUT 200 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #