data_2I0E # _model_server_result.job_id 7BQYrRt_r9kADXizzfxpgQ _model_server_result.datetime_utc '2024-12-02 16:40:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 2I0E # _exptl.entry_id 2I0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.537 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-METHYL-1H-INDOL-3-YL}-4-(2-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I0E _cell.length_a 93.098 _cell.length_b 131.417 _cell.length_c 83.801 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,C,E 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 93.098 131.417 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 179 A LYS 499 1_555 A N TPO 180 A TPO 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 180 A TPO 500 1_555 A N PHE 181 A PHE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LEU 320 A LEU 640 1_555 A N TPO 321 A TPO 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C TPO 321 A TPO 641 1_555 A N PRO 322 A PRO 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale5 A C PHE 339 A PHE 659 1_555 A N SEP 340 A SEP 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C SEP 340 A SEP 660 1_555 A N PHE 341 A PHE 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C LYS 179 B LYS 499 1_555 B N TPO 180 B TPO 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 B C TPO 180 B TPO 500 1_555 B N PHE 181 B PHE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C PHE 339 B PHE 659 1_555 B N SEP 340 B SEP 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 B C SEP 340 B SEP 660 1_555 B N PHE 341 B PHE 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C27 H28 N4 O2' _chem_comp.formula_weight 440.537 _chem_comp.id PDS _chem_comp.mon_nstd_flag . _chem_comp.name 3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-METHYL-1H-INDOL-3-YL}-4-(2-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C6 PDS doub 237 n n C6 C2 PDS sing 238 n n C6 N13 PDS sing 239 n n N13 C12 PDS sing 240 n n N13 HN13 PDS sing 241 n n C12 C5 PDS sing 242 n n C12 O20 PDS doub 243 n n C2 C1 PDS sing 244 n n C2 C5 PDS doub 245 n n C5 C11 PDS sing 246 n n C11 C18 PDS sing 247 n y C11 C19 PDS doub 248 n y C18 C24 PDS doub 249 n y C18 C23 PDS sing 250 n y C24 C29 PDS sing 251 n y C24 H24 PDS sing 252 n n C29 C31 PDS doub 253 n y C29 H29 PDS sing 254 n n C31 C28 PDS sing 255 n y C31 H31 PDS sing 256 n n C28 C23 PDS doub 257 n y C28 H28 PDS sing 258 n n C23 N25 PDS sing 259 n y N25 C19 PDS sing 260 n y N25 HN25 PDS sing 261 n n C19 C26 PDS sing 262 n n C26 H261 PDS sing 263 n n C26 H262 PDS sing 264 n n C26 H263 PDS sing 265 n n C1 C3 PDS sing 266 n y C1 C4 PDS doub 267 n y C3 C7 PDS doub 268 n y C3 C8 PDS sing 269 n y C8 C16 PDS doub 270 n y C8 H8 PDS sing 271 n n C16 C21 PDS sing 272 n y C16 H16 PDS sing 273 n n C7 C15 PDS sing 274 n y C7 N9 PDS sing 275 n y C15 C21 PDS doub 276 n y C15 H15 PDS sing 277 n n C21 H21 PDS sing 278 n n N9 C17 PDS sing 279 n n N9 C4 PDS sing 280 n y C4 C10 PDS sing 281 n n C10 H101 PDS sing 282 n n C10 H102 PDS sing 283 n n C10 H103 PDS sing 284 n n C17 C22 PDS sing 285 n n C17 H171 PDS sing 286 n n C17 H172 PDS sing 287 n n C22 C27 PDS sing 288 n n C22 H221 PDS sing 289 n n C22 H222 PDS sing 290 n n C27 N30 PDS sing 291 n n C27 H271 PDS sing 292 n n C27 H272 PDS sing 293 n n N30 C33 PDS sing 294 n n N30 C32 PDS sing 295 n n C32 H321 PDS sing 296 n n C32 H322 PDS sing 297 n n C32 H323 PDS sing 298 n n C33 H331 PDS sing 299 n n C33 H332 PDS sing 300 n n C33 H333 PDS sing 301 n n # _atom_sites.entry_id 2I0E _atom_sites.fract_transf_matrix[1][1] 0.010741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PDS A 1 901 901 PDS PDS . D 2 PDS B 1 902 902 PDS PDS . E 3 HOH A 1 1 1 HOH HOH . E 3 HOH A 2 2 2 HOH HOH . E 3 HOH A 3 3 3 HOH HOH . E 3 HOH A 4 5 5 HOH HOH . E 3 HOH A 5 13 13 HOH HOH . E 3 HOH A 6 16 16 HOH HOH . E 3 HOH A 7 18 18 HOH HOH . E 3 HOH A 8 19 19 HOH HOH . E 3 HOH A 9 22 22 HOH HOH . E 3 HOH A 10 24 24 HOH HOH . E 3 HOH A 11 29 29 HOH HOH . E 3 HOH A 12 30 30 HOH HOH . E 3 HOH A 13 32 32 HOH HOH . E 3 HOH A 14 33 33 HOH HOH . E 3 HOH A 15 35 35 HOH HOH . E 3 HOH A 16 36 36 HOH HOH . E 3 HOH A 17 39 39 HOH HOH . E 3 HOH A 18 40 40 HOH HOH . E 3 HOH A 19 43 43 HOH HOH . E 3 HOH A 20 47 47 HOH HOH . E 3 HOH A 21 48 48 HOH HOH . E 3 HOH A 22 50 50 HOH HOH . E 3 HOH A 23 52 52 HOH HOH . E 3 HOH A 24 53 53 HOH HOH . E 3 HOH A 25 54 54 HOH HOH . E 3 HOH A 26 55 55 HOH HOH . E 3 HOH A 27 56 56 HOH HOH . E 3 HOH A 28 57 57 HOH HOH . E 3 HOH A 29 58 58 HOH HOH . E 3 HOH A 30 64 64 HOH HOH . E 3 HOH A 31 65 65 HOH HOH . E 3 HOH A 32 66 66 HOH HOH . E 3 HOH A 33 67 67 HOH HOH . E 3 HOH A 34 69 69 HOH HOH . E 3 HOH A 35 70 70 HOH HOH . E 3 HOH A 36 71 71 HOH HOH . E 3 HOH A 37 73 73 HOH HOH . E 3 HOH A 38 74 74 HOH HOH . E 3 HOH A 39 75 75 HOH HOH . E 3 HOH A 40 76 76 HOH HOH . E 3 HOH A 41 77 77 HOH HOH . E 3 HOH A 42 80 80 HOH HOH . E 3 HOH A 43 82 82 HOH HOH . E 3 HOH A 44 83 83 HOH HOH . E 3 HOH A 45 85 85 HOH HOH . E 3 HOH A 46 86 86 HOH HOH . E 3 HOH A 47 90 90 HOH HOH . E 3 HOH A 48 93 93 HOH HOH . E 3 HOH A 49 95 95 HOH HOH . E 3 HOH A 50 96 96 HOH HOH . E 3 HOH A 51 97 97 HOH HOH . E 3 HOH A 52 98 98 HOH HOH . E 3 HOH A 53 101 101 HOH HOH . E 3 HOH A 54 104 104 HOH HOH . E 3 HOH A 55 105 105 HOH HOH . E 3 HOH A 56 106 106 HOH HOH . E 3 HOH A 57 108 108 HOH HOH . E 3 HOH A 58 109 109 HOH HOH . E 3 HOH A 59 110 110 HOH HOH . E 3 HOH A 60 112 112 HOH HOH . E 3 HOH A 61 113 113 HOH HOH . E 3 HOH A 62 114 114 HOH HOH . E 3 HOH A 63 115 115 HOH HOH . F 3 HOH B 1 4 4 HOH HOH . F 3 HOH B 2 6 6 HOH HOH . F 3 HOH B 3 7 7 HOH HOH . F 3 HOH B 4 8 8 HOH HOH . F 3 HOH B 5 9 9 HOH HOH . F 3 HOH B 6 10 10 HOH HOH . F 3 HOH B 7 11 11 HOH HOH . F 3 HOH B 8 12 12 HOH HOH . F 3 HOH B 9 14 14 HOH HOH . F 3 HOH B 10 15 15 HOH HOH . F 3 HOH B 11 17 17 HOH HOH . F 3 HOH B 12 20 20 HOH HOH . F 3 HOH B 13 21 21 HOH HOH . F 3 HOH B 14 23 23 HOH HOH . F 3 HOH B 15 25 25 HOH HOH . F 3 HOH B 16 26 26 HOH HOH . F 3 HOH B 17 27 27 HOH HOH . F 3 HOH B 18 28 28 HOH HOH . F 3 HOH B 19 31 31 HOH HOH . F 3 HOH B 20 34 34 HOH HOH . F 3 HOH B 21 37 37 HOH HOH . F 3 HOH B 22 38 38 HOH HOH . F 3 HOH B 23 41 41 HOH HOH . F 3 HOH B 24 42 42 HOH HOH . F 3 HOH B 25 44 44 HOH HOH . F 3 HOH B 26 45 45 HOH HOH . F 3 HOH B 27 46 46 HOH HOH . F 3 HOH B 28 49 49 HOH HOH . F 3 HOH B 29 51 51 HOH HOH . F 3 HOH B 30 59 59 HOH HOH . F 3 HOH B 31 60 60 HOH HOH . F 3 HOH B 32 61 61 HOH HOH . F 3 HOH B 33 62 62 HOH HOH . F 3 HOH B 34 63 63 HOH HOH . F 3 HOH B 35 68 68 HOH HOH . F 3 HOH B 36 72 72 HOH HOH . F 3 HOH B 37 78 78 HOH HOH . F 3 HOH B 38 79 79 HOH HOH . F 3 HOH B 39 81 81 HOH HOH . F 3 HOH B 40 84 84 HOH HOH . F 3 HOH B 41 87 87 HOH HOH . F 3 HOH B 42 88 88 HOH HOH . F 3 HOH B 43 89 89 HOH HOH . F 3 HOH B 44 91 91 HOH HOH . F 3 HOH B 45 92 92 HOH HOH . F 3 HOH B 46 94 94 HOH HOH . F 3 HOH B 47 99 99 HOH HOH . F 3 HOH B 48 100 100 HOH HOH . F 3 HOH B 49 102 102 HOH HOH . F 3 HOH B 50 103 103 HOH HOH . F 3 HOH B 51 107 107 HOH HOH . F 3 HOH B 52 111 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O14 PDS . . . D 2 7.305 38.68 4.184 1 51.6 ? O14 PDS 902 B 1 HETATM 2 C C6 PDS . . . D 2 6.477 38.31 3.348 1 49.45 ? C6 PDS 902 B 1 HETATM 3 N N13 PDS . . . D 2 6.294 37.016 2.734 1 49.26 ? N13 PDS 902 B 1 HETATM 4 C C12 PDS . . . D 2 5.193 36.974 1.798 1 49.87 ? C12 PDS 902 B 1 HETATM 5 O O20 PDS . . . D 2 4.8 36.038 1.141 1 50.27 ? O20 PDS 902 B 1 HETATM 6 C C2 PDS . . . D 2 5.42 39.084 2.752 1 48.69 ? C2 PDS 902 B 1 HETATM 7 C C5 PDS . . . D 2 4.701 38.301 1.841 1 49.48 ? C5 PDS 902 B 1 HETATM 8 C C11 PDS . . . D 2 3.52 38.78 0.988 1 50.04 ? C11 PDS 902 B 1 HETATM 9 C C18 PDS . . . D 2 3.424 40.057 0.326 1 49.73 ? C18 PDS 902 B 1 HETATM 10 C C24 PDS . . . D 2 4.241 41.234 0.186 1 49.58 ? C24 PDS 902 B 1 HETATM 11 C C29 PDS . . . D 2 3.779 42.362 -0.578 1 49.98 ? C29 PDS 902 B 1 HETATM 12 C C31 PDS . . . D 2 2.51 42.335 -1.226 1 49.57 ? C31 PDS 902 B 1 HETATM 13 C C28 PDS . . . D 2 1.67 41.195 -1.116 1 49.85 ? C28 PDS 902 B 1 HETATM 14 C C23 PDS . . . D 2 2.115 40.055 -0.349 1 49.62 ? C23 PDS 902 B 1 HETATM 15 N N25 PDS . . . D 2 1.508 38.858 -0.102 1 49.86 ? N25 PDS 902 B 1 HETATM 16 C C19 PDS . . . D 2 2.306 38.08 0.679 1 50.26 ? C19 PDS 902 B 1 HETATM 17 C C26 PDS . . . D 2 1.831 36.74 1.071 1 50.02 ? C26 PDS 902 B 1 HETATM 18 C C1 PDS . . . D 2 5.232 40.568 3.089 1 47.96 ? C1 PDS 902 B 1 HETATM 19 C C3 PDS . . . D 2 6.265 41.526 3.083 1 47.29 ? C3 PDS 902 B 1 HETATM 20 C C8 PDS . . . D 2 7.676 41.493 2.827 1 47.14 ? C8 PDS 902 B 1 HETATM 21 C C16 PDS . . . D 2 8.47 42.695 2.915 1 47.96 ? C16 PDS 902 B 1 HETATM 22 C C7 PDS . . . D 2 5.644 42.809 3.43 1 48.02 ? C7 PDS 902 B 1 HETATM 23 C C15 PDS . . . D 2 6.428 44.016 3.516 1 48.33 ? C15 PDS 902 B 1 HETATM 24 C C21 PDS . . . D 2 7.836 43.946 3.256 1 47.94 ? C21 PDS 902 B 1 HETATM 25 N N9 PDS . . . D 2 4.314 42.632 3.623 1 47.93 ? N9 PDS 902 B 1 HETATM 26 C C4 PDS . . . D 2 4.036 41.288 3.427 1 48.56 ? C4 PDS 902 B 1 HETATM 27 C C10 PDS . . . D 2 2.672 40.781 3.572 1 48.98 ? C10 PDS 902 B 1 HETATM 28 C C17 PDS . . . D 2 3.408 43.735 3.999 1 49.43 ? C17 PDS 902 B 1 HETATM 29 C C22 PDS . . . D 2 2.721 44.431 2.786 1 52.68 ? C22 PDS 902 B 1 HETATM 30 C C27 PDS . . . D 2 1.208 44.126 2.776 1 54.94 ? C27 PDS 902 B 1 HETATM 31 N N30 PDS . . . D 2 0.279 45.223 2.451 1 56.08 ? N30 PDS 902 B 1 HETATM 32 C C32 PDS . . . D 2 0.416 45.501 1.007 1 56.73 ? C32 PDS 902 B 1 HETATM 33 C C33 PDS . . . D 2 0.499 46.48 3.21 1 56.26 ? C33 PDS 902 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #