data_2I1O # _model_server_result.job_id I3eHPdk-jtl-Ub0ib4wrHg _model_server_result.datetime_utc '2024-11-07 19:11:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 2I1O # _exptl.entry_id 2I1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2I1O _cell.length_a 135.012 _cell.length_b 135.012 _cell.length_c 120.324 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 135.012 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 67.506 116.923822 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 67.506 116.923822 60.162 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 135.012 0 60.162 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 60.162 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 33 1_555 A SG CYS 106 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A SG CYS 336 A CYS 330 1_555 H ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc2 A SG CYS 336 A CYS 330 1_555 I ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 A SG CYS 339 A CYS 333 1_555 H ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 A SG CYS 354 A CYS 348 1_555 I ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc5 A SG CYS 356 A CYS 350 1_555 H ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc6 A SG CYS 356 A CYS 350 1_555 I ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 244 n n C1 H11 MPD sing 245 n n C1 H12 MPD sing 246 n n C1 H13 MPD sing 247 n n C2 O2 MPD sing 248 n n C2 CM MPD sing 249 n n C2 C3 MPD sing 250 n n O2 HO2 MPD sing 251 n n CM HM1 MPD sing 252 n n CM HM2 MPD sing 253 n n CM HM3 MPD sing 254 n n C3 C4 MPD sing 255 n n C3 H31 MPD sing 256 n n C3 H32 MPD sing 257 n n C4 O4 MPD sing 258 n n C4 C5 MPD sing 259 n n C4 H4 MPD sing 260 n n O4 HO4 MPD sing 261 n n C5 H51 MPD sing 262 n n C5 H52 MPD sing 263 n n C5 H53 MPD sing 264 n n # _atom_sites.entry_id 2I1O _atom_sites.fract_transf_matrix[1][1] 0.007407 _atom_sites.fract_transf_matrix[1][2] 0.004276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 501 PO4 PO4 . C 2 PO4 A 1 502 502 PO4 PO4 . D 2 PO4 A 1 503 503 PO4 PO4 . E 2 PO4 A 1 504 504 PO4 PO4 . F 2 PO4 A 1 505 505 PO4 PO4 . G 2 PO4 A 1 506 506 PO4 PO4 . H 3 ZN A 1 701 701 ZN ZN . I 3 ZN A 1 702 702 ZN ZN . J 4 TRS A 1 601 601 TRS TRS . K 5 MPD A 1 401 401 MPD MPD . L 5 MPD A 1 402 402 MPD MPD . M 6 ACY A 1 551 551 ACY ACY . N 6 ACY A 1 552 552 ACY ACY . O 7 HOH A 1 801 801 HOH TIP . O 7 HOH A 2 802 802 HOH TIP . O 7 HOH A 3 803 803 HOH TIP . O 7 HOH A 4 804 804 HOH TIP . O 7 HOH A 5 805 805 HOH TIP . O 7 HOH A 6 806 806 HOH TIP . O 7 HOH A 7 807 807 HOH TIP . O 7 HOH A 8 808 808 HOH TIP . O 7 HOH A 9 809 809 HOH TIP . O 7 HOH A 10 810 810 HOH TIP . O 7 HOH A 11 811 811 HOH TIP . O 7 HOH A 12 812 812 HOH TIP . O 7 HOH A 13 813 813 HOH TIP . O 7 HOH A 14 814 814 HOH TIP . O 7 HOH A 15 815 815 HOH TIP . O 7 HOH A 16 816 816 HOH TIP . O 7 HOH A 17 817 817 HOH TIP . O 7 HOH A 18 818 818 HOH TIP . O 7 HOH A 19 819 819 HOH TIP . O 7 HOH A 20 820 820 HOH TIP . O 7 HOH A 21 821 821 HOH TIP . O 7 HOH A 22 822 822 HOH TIP . O 7 HOH A 23 823 823 HOH TIP . O 7 HOH A 24 824 824 HOH TIP . O 7 HOH A 25 825 825 HOH TIP . O 7 HOH A 26 826 826 HOH TIP . O 7 HOH A 27 827 827 HOH TIP . O 7 HOH A 28 828 828 HOH TIP . O 7 HOH A 29 829 829 HOH TIP . O 7 HOH A 30 830 830 HOH TIP . O 7 HOH A 31 831 831 HOH TIP . O 7 HOH A 32 832 832 HOH TIP . O 7 HOH A 33 833 833 HOH TIP . O 7 HOH A 34 834 834 HOH TIP . O 7 HOH A 35 835 835 HOH TIP . O 7 HOH A 36 836 836 HOH TIP . O 7 HOH A 37 837 837 HOH TIP . O 7 HOH A 38 838 838 HOH TIP . O 7 HOH A 39 839 839 HOH TIP . O 7 HOH A 40 840 840 HOH TIP . O 7 HOH A 41 841 841 HOH TIP . O 7 HOH A 42 842 842 HOH TIP . O 7 HOH A 43 843 843 HOH TIP . O 7 HOH A 44 844 844 HOH TIP . O 7 HOH A 45 845 845 HOH TIP . O 7 HOH A 46 846 846 HOH TIP . O 7 HOH A 47 847 847 HOH TIP . O 7 HOH A 48 848 848 HOH TIP . O 7 HOH A 49 849 849 HOH TIP . O 7 HOH A 50 850 850 HOH TIP . O 7 HOH A 51 851 851 HOH TIP . O 7 HOH A 52 852 852 HOH TIP . O 7 HOH A 53 853 853 HOH TIP . O 7 HOH A 54 854 854 HOH TIP . O 7 HOH A 55 855 855 HOH TIP . O 7 HOH A 56 856 856 HOH TIP . O 7 HOH A 57 857 857 HOH TIP . O 7 HOH A 58 858 858 HOH TIP . O 7 HOH A 59 859 859 HOH TIP . O 7 HOH A 60 860 860 HOH TIP . O 7 HOH A 61 861 861 HOH TIP . O 7 HOH A 62 862 862 HOH TIP . O 7 HOH A 63 863 863 HOH TIP . O 7 HOH A 64 864 864 HOH TIP . O 7 HOH A 65 865 865 HOH TIP . O 7 HOH A 66 866 866 HOH TIP . O 7 HOH A 67 867 867 HOH TIP . O 7 HOH A 68 868 868 HOH TIP . O 7 HOH A 69 869 869 HOH TIP . O 7 HOH A 70 870 870 HOH TIP . O 7 HOH A 71 871 871 HOH TIP . O 7 HOH A 72 872 872 HOH TIP . O 7 HOH A 73 873 873 HOH TIP . O 7 HOH A 74 874 874 HOH TIP . O 7 HOH A 75 875 875 HOH TIP . O 7 HOH A 76 876 876 HOH TIP . O 7 HOH A 77 877 877 HOH TIP . O 7 HOH A 78 878 878 HOH TIP . O 7 HOH A 79 879 879 HOH TIP . O 7 HOH A 80 880 880 HOH TIP . O 7 HOH A 81 881 881 HOH TIP . O 7 HOH A 82 882 882 HOH TIP . O 7 HOH A 83 883 883 HOH TIP . O 7 HOH A 84 884 884 HOH TIP . O 7 HOH A 85 885 885 HOH TIP . O 7 HOH A 86 886 886 HOH TIP . O 7 HOH A 87 887 887 HOH TIP . O 7 HOH A 88 888 888 HOH TIP . O 7 HOH A 89 889 889 HOH TIP . O 7 HOH A 90 890 890 HOH TIP . O 7 HOH A 91 891 891 HOH TIP . O 7 HOH A 92 892 892 HOH TIP . O 7 HOH A 93 893 893 HOH TIP . O 7 HOH A 94 894 894 HOH TIP . O 7 HOH A 95 895 895 HOH TIP . O 7 HOH A 96 896 896 HOH TIP . O 7 HOH A 97 897 897 HOH TIP . O 7 HOH A 98 898 898 HOH TIP . O 7 HOH A 99 899 899 HOH TIP . O 7 HOH A 100 900 900 HOH TIP . O 7 HOH A 101 901 901 HOH TIP . O 7 HOH A 102 902 902 HOH TIP . O 7 HOH A 103 903 903 HOH TIP . O 7 HOH A 104 904 904 HOH TIP . O 7 HOH A 105 905 905 HOH TIP . O 7 HOH A 106 906 906 HOH TIP . O 7 HOH A 107 907 907 HOH TIP . O 7 HOH A 108 908 908 HOH TIP . O 7 HOH A 109 909 909 HOH TIP . O 7 HOH A 110 910 910 HOH TIP . O 7 HOH A 111 911 911 HOH TIP . O 7 HOH A 112 912 912 HOH TIP . O 7 HOH A 113 913 913 HOH TIP . O 7 HOH A 114 914 914 HOH TIP . O 7 HOH A 115 915 915 HOH TIP . O 7 HOH A 116 916 916 HOH TIP . O 7 HOH A 117 917 917 HOH TIP . O 7 HOH A 118 918 918 HOH TIP . O 7 HOH A 119 919 919 HOH TIP . O 7 HOH A 120 920 920 HOH TIP . O 7 HOH A 121 921 921 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . L 5 86.012 73.12 15.889 1 52.18 ? C1 MPD 402 A 1 HETATM 2 C C2 MPD . . . L 5 86.366 74.215 14.892 1 53.1 ? C2 MPD 402 A 1 HETATM 3 O O2 MPD . . . L 5 86.477 75.427 15.669 1 53.98 ? O2 MPD 402 A 1 HETATM 4 C CM MPD . . . L 5 87.672 73.935 14.202 1 52.06 ? CM MPD 402 A 1 HETATM 5 C C3 MPD . . . L 5 85.238 74.472 13.855 1 53.07 ? C3 MPD 402 A 1 HETATM 6 C C4 MPD . . . L 5 85.296 73.704 12.531 1 54.98 ? C4 MPD 402 A 1 HETATM 7 O O4 MPD . . . L 5 85.24 72.323 12.739 1 56.83 ? O4 MPD 402 A 1 HETATM 8 C C5 MPD . . . L 5 84.139 74.063 11.637 1 56.11 ? C5 MPD 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #