data_2I22 # _model_server_result.job_id cMvkHvOhqWQBhUz77nLDtQ _model_server_result.datetime_utc '2024-11-29 12:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i22 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 2I22 # _exptl.entry_id 2I22 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.162 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-ALTRO-HEPT-2-ULOSE 7-PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.13 _cell.angle_gamma 90 _cell.entry_id 2I22 _cell.length_a 73.045 _cell.length_b 76.54 _cell.length_c 78.316 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,F,I 1 1 B,C,E,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 77 A CYS 57 1_555 D SG CYS 77 D CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? disulf ? disulf2 B SG CYS 77 B CYS 57 1_555 C SG CYS 77 C CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? # _chem_comp.formula 'C7 H15 O10 P' _chem_comp.formula_weight 290.162 _chem_comp.id I22 _chem_comp.mon_nstd_flag . _chem_comp.name 'D-ALTRO-HEPT-2-ULOSE 7-PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7-O-PHOSPHONO-D-ALTRO-HEPT-2-ULOSE;SEDOHEPTULOSE 7-PHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 P1 I22 sing 152 n n O8 HO8 I22 sing 153 n n P1 O9 I22 doub 154 n n P1 O10 I22 sing 155 n n P1 O7 I22 sing 156 n n O10 HO10 I22 sing 157 n n O7 C7 I22 sing 158 n n C7 C6 I22 sing 159 n n C7 H71 I22 sing 160 n n C7 H72 I22 sing 161 n n C6 O6 I22 sing 162 n n C6 C5 I22 sing 163 n n C6 H6 I22 sing 164 n n O6 HO6 I22 sing 165 n n C5 O5 I22 sing 166 n n C5 C4 I22 sing 167 n n C5 H5 I22 sing 168 n n O5 HO5 I22 sing 169 n n C4 O4 I22 sing 170 n n C4 C3 I22 sing 171 n n C4 H4 I22 sing 172 n n O4 HO4 I22 sing 173 n n C3 C2 I22 sing 174 n n C3 O3 I22 sing 175 n n C3 H3 I22 sing 176 n n O3 HO3 I22 sing 177 n n C2 C1 I22 sing 178 n n C2 O2 I22 doub 179 n n C1 O1 I22 sing 180 n n C1 H11 I22 sing 181 n n C1 H12 I22 sing 182 n n O1 HO1 I22 sing 183 n n # _atom_sites.entry_id 2I22 _atom_sites.fract_transf_matrix[1][1] 0.01369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003959 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 I22 B 1 900 900 I22 I22 . F 3 HOH A 1 193 6 HOH HOH . F 3 HOH A 2 194 8 HOH HOH . F 3 HOH A 3 195 11 HOH HOH . F 3 HOH A 4 196 17 HOH HOH . F 3 HOH A 5 197 26 HOH HOH . F 3 HOH A 6 198 38 HOH HOH . F 3 HOH A 7 199 46 HOH HOH . F 3 HOH A 8 200 47 HOH HOH . F 3 HOH A 9 201 49 HOH HOH . F 3 HOH A 10 202 54 HOH HOH . F 3 HOH A 11 203 58 HOH HOH . F 3 HOH A 12 204 65 HOH HOH . F 3 HOH A 13 205 67 HOH HOH . F 3 HOH A 14 206 71 HOH HOH . F 3 HOH A 15 207 75 HOH HOH . F 3 HOH A 16 208 77 HOH HOH . F 3 HOH A 17 209 81 HOH HOH . F 3 HOH A 18 210 83 HOH HOH . F 3 HOH A 19 211 84 HOH HOH . F 3 HOH A 20 212 85 HOH HOH . F 3 HOH A 21 213 97 HOH HOH . F 3 HOH A 22 214 98 HOH HOH . F 3 HOH A 23 215 102 HOH HOH . F 3 HOH A 24 216 115 HOH HOH . F 3 HOH A 25 217 117 HOH HOH . F 3 HOH A 26 218 118 HOH HOH . F 3 HOH A 27 219 120 HOH HOH . F 3 HOH A 28 220 121 HOH HOH . F 3 HOH A 29 221 126 HOH HOH . F 3 HOH A 30 222 127 HOH HOH . F 3 HOH A 31 223 149 HOH HOH . F 3 HOH A 32 224 164 HOH HOH . F 3 HOH A 33 225 170 HOH HOH . F 3 HOH A 34 226 180 HOH HOH . F 3 HOH A 35 227 181 HOH HOH . F 3 HOH A 36 228 183 HOH HOH . F 3 HOH A 37 229 189 HOH HOH . F 3 HOH A 38 230 190 HOH HOH . F 3 HOH A 39 231 194 HOH HOH . F 3 HOH A 40 232 198 HOH HOH . F 3 HOH A 41 233 203 HOH HOH . F 3 HOH A 42 234 206 HOH HOH . F 3 HOH A 43 235 209 HOH HOH . F 3 HOH A 44 236 210 HOH HOH . F 3 HOH A 45 237 211 HOH HOH . F 3 HOH A 46 238 217 HOH HOH . F 3 HOH A 47 239 219 HOH HOH . F 3 HOH A 48 240 220 HOH HOH . F 3 HOH A 49 241 223 HOH HOH . F 3 HOH A 50 242 226 HOH HOH . G 3 HOH B 1 901 13 HOH HOH . G 3 HOH B 2 902 14 HOH HOH . G 3 HOH B 3 903 18 HOH HOH . G 3 HOH B 4 904 19 HOH HOH . G 3 HOH B 5 905 32 HOH HOH . G 3 HOH B 6 906 40 HOH HOH . G 3 HOH B 7 907 48 HOH HOH . G 3 HOH B 8 908 55 HOH HOH . G 3 HOH B 9 909 60 HOH HOH . G 3 HOH B 10 910 63 HOH HOH . G 3 HOH B 11 911 68 HOH HOH . G 3 HOH B 12 912 72 HOH HOH . G 3 HOH B 13 913 73 HOH HOH . G 3 HOH B 14 914 74 HOH HOH . G 3 HOH B 15 915 79 HOH HOH . G 3 HOH B 16 916 88 HOH HOH . G 3 HOH B 17 917 90 HOH HOH . G 3 HOH B 18 918 93 HOH HOH . G 3 HOH B 19 919 94 HOH HOH . G 3 HOH B 20 920 107 HOH HOH . G 3 HOH B 21 921 111 HOH HOH . G 3 HOH B 22 922 123 HOH HOH . G 3 HOH B 23 923 131 HOH HOH . G 3 HOH B 24 924 134 HOH HOH . G 3 HOH B 25 925 136 HOH HOH . G 3 HOH B 26 926 139 HOH HOH . G 3 HOH B 27 927 141 HOH HOH . G 3 HOH B 28 928 144 HOH HOH . G 3 HOH B 29 929 145 HOH HOH . G 3 HOH B 30 930 146 HOH HOH . G 3 HOH B 31 931 147 HOH HOH . G 3 HOH B 32 932 153 HOH HOH . G 3 HOH B 33 933 155 HOH HOH . G 3 HOH B 34 934 161 HOH HOH . G 3 HOH B 35 935 162 HOH HOH . G 3 HOH B 36 936 163 HOH HOH . G 3 HOH B 37 937 168 HOH HOH . G 3 HOH B 38 938 171 HOH HOH . G 3 HOH B 39 939 175 HOH HOH . G 3 HOH B 40 940 176 HOH HOH . G 3 HOH B 41 941 177 HOH HOH . G 3 HOH B 42 942 179 HOH HOH . G 3 HOH B 43 943 191 HOH HOH . G 3 HOH B 44 944 192 HOH HOH . G 3 HOH B 45 945 195 HOH HOH . G 3 HOH B 46 946 196 HOH HOH . G 3 HOH B 47 947 200 HOH HOH . G 3 HOH B 48 948 204 HOH HOH . G 3 HOH B 49 949 208 HOH HOH . G 3 HOH B 50 950 214 HOH HOH . G 3 HOH B 51 951 215 HOH HOH . G 3 HOH B 52 952 218 HOH HOH . H 3 HOH C 1 193 1 HOH HOH . H 3 HOH C 2 194 2 HOH HOH . H 3 HOH C 3 195 4 HOH HOH . H 3 HOH C 4 196 5 HOH HOH . H 3 HOH C 5 197 9 HOH HOH . H 3 HOH C 6 198 10 HOH HOH . H 3 HOH C 7 199 12 HOH HOH . H 3 HOH C 8 200 15 HOH HOH . H 3 HOH C 9 201 16 HOH HOH . H 3 HOH C 10 202 21 HOH HOH . H 3 HOH C 11 203 22 HOH HOH . H 3 HOH C 12 204 23 HOH HOH . H 3 HOH C 13 205 24 HOH HOH . H 3 HOH C 14 206 25 HOH HOH . H 3 HOH C 15 207 34 HOH HOH . H 3 HOH C 16 208 36 HOH HOH . H 3 HOH C 17 209 39 HOH HOH . H 3 HOH C 18 210 41 HOH HOH . H 3 HOH C 19 211 42 HOH HOH . H 3 HOH C 20 212 43 HOH HOH . H 3 HOH C 21 213 44 HOH HOH . H 3 HOH C 22 214 50 HOH HOH . H 3 HOH C 23 215 57 HOH HOH . H 3 HOH C 24 216 61 HOH HOH . H 3 HOH C 25 217 62 HOH HOH . H 3 HOH C 26 218 66 HOH HOH . H 3 HOH C 27 219 69 HOH HOH . H 3 HOH C 28 220 70 HOH HOH . H 3 HOH C 29 221 78 HOH HOH . H 3 HOH C 30 222 80 HOH HOH . H 3 HOH C 31 223 82 HOH HOH . H 3 HOH C 32 224 86 HOH HOH . H 3 HOH C 33 225 87 HOH HOH . H 3 HOH C 34 226 89 HOH HOH . H 3 HOH C 35 227 92 HOH HOH . H 3 HOH C 36 228 100 HOH HOH . H 3 HOH C 37 229 103 HOH HOH . H 3 HOH C 38 230 108 HOH HOH . H 3 HOH C 39 231 110 HOH HOH . H 3 HOH C 40 232 112 HOH HOH . H 3 HOH C 41 233 124 HOH HOH . H 3 HOH C 42 234 130 HOH HOH . H 3 HOH C 43 235 132 HOH HOH . H 3 HOH C 44 236 137 HOH HOH . H 3 HOH C 45 237 138 HOH HOH . H 3 HOH C 46 238 143 HOH HOH . H 3 HOH C 47 239 150 HOH HOH . H 3 HOH C 48 240 151 HOH HOH . H 3 HOH C 49 241 154 HOH HOH . H 3 HOH C 50 242 157 HOH HOH . H 3 HOH C 51 243 159 HOH HOH . H 3 HOH C 52 244 167 HOH HOH . H 3 HOH C 53 245 182 HOH HOH . H 3 HOH C 54 246 184 HOH HOH . H 3 HOH C 55 247 185 HOH HOH . H 3 HOH C 56 248 186 HOH HOH . H 3 HOH C 57 249 188 HOH HOH . H 3 HOH C 58 250 193 HOH HOH . H 3 HOH C 59 251 199 HOH HOH . H 3 HOH C 60 252 201 HOH HOH . H 3 HOH C 61 253 202 HOH HOH . H 3 HOH C 62 254 205 HOH HOH . H 3 HOH C 63 255 207 HOH HOH . H 3 HOH C 64 256 216 HOH HOH . H 3 HOH C 65 257 224 HOH HOH . H 3 HOH C 66 258 225 HOH HOH . I 3 HOH D 1 193 3 HOH HOH . I 3 HOH D 2 194 7 HOH HOH . I 3 HOH D 3 195 20 HOH HOH . I 3 HOH D 4 196 27 HOH HOH . I 3 HOH D 5 197 29 HOH HOH . I 3 HOH D 6 198 30 HOH HOH . I 3 HOH D 7 199 31 HOH HOH . I 3 HOH D 8 200 33 HOH HOH . I 3 HOH D 9 201 37 HOH HOH . I 3 HOH D 10 202 45 HOH HOH . I 3 HOH D 11 203 51 HOH HOH . I 3 HOH D 12 204 52 HOH HOH . I 3 HOH D 13 205 53 HOH HOH . I 3 HOH D 14 206 59 HOH HOH . I 3 HOH D 15 207 91 HOH HOH . I 3 HOH D 16 208 95 HOH HOH . I 3 HOH D 17 209 96 HOH HOH . I 3 HOH D 18 210 99 HOH HOH . I 3 HOH D 19 211 101 HOH HOH . I 3 HOH D 20 212 105 HOH HOH . I 3 HOH D 21 213 106 HOH HOH . I 3 HOH D 22 214 109 HOH HOH . I 3 HOH D 23 215 113 HOH HOH . I 3 HOH D 24 216 114 HOH HOH . I 3 HOH D 25 217 119 HOH HOH . I 3 HOH D 26 218 122 HOH HOH . I 3 HOH D 27 219 125 HOH HOH . I 3 HOH D 28 220 128 HOH HOH . I 3 HOH D 29 221 129 HOH HOH . I 3 HOH D 30 222 133 HOH HOH . I 3 HOH D 31 223 140 HOH HOH . I 3 HOH D 32 224 156 HOH HOH . I 3 HOH D 33 225 158 HOH HOH . I 3 HOH D 34 226 165 HOH HOH . I 3 HOH D 35 227 169 HOH HOH . I 3 HOH D 36 228 172 HOH HOH . I 3 HOH D 37 229 173 HOH HOH . I 3 HOH D 38 230 174 HOH HOH . I 3 HOH D 39 231 178 HOH HOH . I 3 HOH D 40 232 187 HOH HOH . I 3 HOH D 41 233 212 HOH HOH . I 3 HOH D 42 234 213 HOH HOH . I 3 HOH D 43 235 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 I22 . . . E 2 30.776 -15.824 25.127 1 27.35 ? O8 I22 900 B 1 HETATM 2 P P1 I22 . . . E 2 30.156 -14.582 24.324 1 28.44 ? P1 I22 900 B 1 HETATM 3 O O9 I22 . . . E 2 30.888 -14.383 22.961 1 25.28 ? O9 I22 900 B 1 HETATM 4 O O10 I22 . . . E 2 28.536 -14.764 24.134 1 26.43 ? O10 I22 900 B 1 HETATM 5 O O7 I22 . . . E 2 30.34 -13.082 25.445 1 31.73 ? O7 I22 900 B 1 HETATM 6 C C7 I22 . . . E 2 29.149 -12.718 26.363 1 22.34 ? C7 I22 900 B 1 HETATM 7 C C6 I22 . . . E 2 29.905 -11.753 27.365 1 29.67 ? C6 I22 900 B 1 HETATM 8 O O6 I22 . . . E 2 30.812 -11.013 26.427 1 28.19 ? O6 I22 900 B 1 HETATM 9 C C5 I22 . . . E 2 28.942 -10.942 28.224 1 28.93 ? C5 I22 900 B 1 HETATM 10 O O5 I22 . . . E 2 28.355 -10.118 27.064 1 36.68 ? O5 I22 900 B 1 HETATM 11 C C4 I22 . . . E 2 27.787 -11.982 28.544 1 28.54 ? C4 I22 900 B 1 HETATM 12 O O4 I22 . . . E 2 28.631 -12.922 29.278 1 32.66 ? O4 I22 900 B 1 HETATM 13 C C3 I22 . . . E 2 26.846 -11.263 29.486 1 32.66 ? C3 I22 900 B 1 HETATM 14 O O3 I22 . . . E 2 25.898 -12.363 29.849 1 25.47 ? O3 I22 900 B 1 HETATM 15 C C2 I22 . . . E 2 26.312 -9.993 28.783 1 30.2 ? C2 I22 900 B 1 HETATM 16 O O2 I22 . . . E 2 25.107 -9.914 28.571 1 23.31 ? O2 I22 900 B 1 HETATM 17 C C1 I22 . . . E 2 27.156 -8.763 28.549 1 25.63 ? C1 I22 900 B 1 HETATM 18 O O1 I22 . . . E 2 28.616 -8.925 29.092 1 30.51 ? O1 I22 900 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #